Wall clock time and date at job start Sun Mar 29 2020 22:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.06075 * 2 1 4 4 C 1.54270 * 110.03094 * 238.58344 * 2 1 3 5 5 C 1.54894 * 104.19540 * 217.10873 * 4 2 1 6 6 C 1.54894 * 102.91406 * 37.85043 * 5 4 2 7 7 C 1.53881 * 110.03294 * 121.42194 * 2 1 3 8 8 C 1.52997 * 110.02915 * 238.61725 * 7 2 1 9 9 C 1.50702 * 110.02753 * 359.97438 * 7 2 1 10 10 O 1.20828 * 119.99952 * 113.19274 * 9 7 2 11 11 O 1.34233 * 120.00180 * 293.19233 * 9 7 2 12 12 C 1.45199 * 116.99871 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47052 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47281 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99691 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99973 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99868 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47203 * 59.99710 * 18 16 14 20 20 H 1.48500 * 109.46942 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46861 * 299.99740 * 18 16 14 22 22 H 1.08999 * 109.47660 * 185.54318 * 1 2 3 23 23 H 1.09001 * 109.46852 * 305.54960 * 1 2 3 24 24 H 1.09001 * 109.47166 * 65.53975 * 1 2 3 25 25 H 1.09003 * 110.48589 * 98.43176 * 4 2 1 26 26 H 1.08995 * 110.59814 * 335.83943 * 4 2 1 27 27 H 1.09004 * 110.75356 * 156.25581 * 5 4 2 28 28 H 1.09000 * 110.75756 * 279.44217 * 5 4 2 29 29 H 1.08998 * 110.48701 * 80.82863 * 6 5 4 30 30 H 1.08999 * 110.48060 * 203.47310 * 6 5 4 31 31 H 1.09001 * 109.47366 * 59.99575 * 8 7 2 32 32 H 1.09001 * 109.46964 * 179.97438 * 8 7 2 33 33 H 1.08994 * 109.47485 * 299.99469 * 8 7 2 34 34 H 1.08995 * 109.47179 * 300.00208 * 12 11 9 35 35 H 1.09005 * 109.47136 * 60.00263 * 12 11 9 36 36 H 1.08995 * 109.47428 * 300.00214 * 13 12 11 37 37 H 1.09005 * 109.46805 * 60.00219 * 13 12 11 38 38 H 0.97005 * 120.00114 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5009 -0.7191 6 6 2.8922 -1.9406 0.7050 7 6 2.0571 -0.7537 1.2337 8 6 2.9398 0.1705 2.0747 9 6 0.9037 -1.2588 2.0617 10 8 0.7061 -2.4466 2.1614 11 8 0.0958 -0.3891 2.6884 12 6 -0.9944 -0.9468 3.4687 13 6 -1.7995 0.1885 4.1042 14 6 -2.9314 -0.3902 4.9135 15 1 -3.0630 -1.4607 4.9694 16 6 -3.7988 0.4470 5.5827 17 7 -3.6382 1.7505 5.5150 18 14 -5.2014 -0.2704 6.5864 19 1 -4.6503 -1.1434 7.6538 20 1 -5.9836 0.8315 7.2021 21 1 -6.0857 -1.0696 5.7007 22 1 -0.3634 -1.0228 0.0993 23 1 -0.3633 0.5975 0.8361 24 1 -0.3633 0.4255 -0.9354 25 1 2.3297 -0.0536 -2.0255 26 1 1.3151 -1.4659 -1.5988 27 1 3.5323 -2.3680 -1.3423 28 1 4.1717 -0.8301 -0.6782 29 1 2.2835 -2.8438 0.6609 30 1 3.7705 -2.1015 1.3301 31 1 2.3564 1.0309 2.4027 32 1 3.3076 -0.3720 2.9457 33 1 3.7840 0.5112 1.4754 34 1 -1.6435 -1.5334 2.8187 35 1 -0.5898 -1.5876 4.2522 36 1 -1.1502 0.7747 4.7543 37 1 -2.2041 0.8296 3.3210 38 1 -4.2487 2.3395 5.9855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835265958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:07 Heat of formation + Delta-G solvation = -122.204908 kcal Electronic energy + Delta-G solvation = -17857.546474 eV Core-core repulsion = 15084.733263 eV Total energy + Delta-G solvation = -2772.813212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72053 -38.09362 -35.95281 -33.34349 -31.59442 -31.33335 -30.07429 -26.38661 -25.21719 -24.16280 -22.37460 -20.79860 -20.69624 -18.83295 -16.87723 -16.29790 -16.06887 -15.95445 -15.32836 -14.56465 -14.14100 -13.75786 -13.42417 -12.90707 -12.78385 -12.54682 -12.42616 -12.29613 -11.96031 -11.53051 -11.20211 -11.11986 -11.03656 -10.79509 -10.73291 -10.72773 -10.63417 -10.54283 -10.42580 -9.99819 -9.56676 -9.52738 -9.28198 -8.43198 -6.09525 -4.13795 2.67039 3.23572 3.30481 3.34509 3.39181 4.35941 4.39117 4.45471 4.69854 5.13573 5.16089 5.21555 5.26960 5.34532 5.40540 5.48818 5.53572 5.68672 5.75992 5.81567 5.88611 5.97651 6.02555 6.07848 6.12027 6.14503 6.18529 6.30446 6.33715 6.48504 6.67359 7.08092 7.57490 7.64010 7.88195 8.22793 8.33839 8.91504 9.50513 11.01880 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.047654 B = 0.004866 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.432296 B = 5752.283953 C = 5845.884000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 H 0.085 0.915 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.058 4.058 8 C -0.138 4.138 9 C 0.471 3.529 10 O -0.522 6.522 11 O -0.352 6.352 12 C 0.073 3.927 13 C 0.026 3.974 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.356 -2.589 -11.829 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.059 4.059 8 C -0.195 4.195 9 C 0.315 3.685 10 O -0.411 6.411 11 O -0.268 6.268 12 C 0.001 3.999 13 C -0.011 4.011 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.070 0.930 23 H 0.100 0.900 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.170 -2.751 -11.694 17.826 hybrid contribution -0.930 -0.480 0.697 1.257 sum 12.239 -3.231 -10.998 16.769 Atomic orbital electron populations 1.22181 0.94167 1.02418 1.03204 1.21780 0.96525 0.99315 0.92142 0.89654 1.22484 0.97393 0.99071 0.96953 1.22477 0.97697 0.99940 0.95879 1.22500 0.99096 0.97419 0.95970 1.21327 0.92269 0.97491 0.94804 1.21879 0.99079 0.99370 0.99156 1.23293 0.82841 0.85022 0.77364 1.90591 1.71953 1.18023 1.60571 1.86562 1.40286 1.40650 1.59326 1.23598 0.84641 0.99258 0.92447 1.19142 0.93667 0.92530 0.95733 1.20955 1.11876 0.93246 1.30447 0.92386 1.24969 0.97842 0.94790 0.96459 1.69961 1.37806 1.02348 1.42744 0.86546 0.81894 0.78612 0.80329 1.20076 1.21110 1.20083 0.92968 0.90017 0.92276 0.91355 0.91321 0.91346 0.91387 0.89570 0.91009 0.90825 0.92242 0.91432 0.92536 0.92572 0.95433 0.95418 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 7.80 37.15 0.29 -1.99 16 2 C -0.08 -0.95 3.16 -89.50 -0.28 -1.23 16 3 H 0.09 0.92 7.67 -51.93 -0.40 0.52 16 4 C -0.12 -1.21 6.36 -25.07 -0.16 -1.37 16 5 C -0.12 -1.13 6.90 -24.73 -0.17 -1.30 16 6 C -0.11 -1.33 5.75 -24.97 -0.14 -1.48 16 7 C -0.06 -0.78 0.88 -154.44 -0.14 -0.91 16 8 C -0.14 -1.62 8.01 37.16 0.30 -1.32 16 9 C 0.47 8.50 4.66 36.01 0.17 8.67 16 10 O -0.52 -10.69 15.15 -18.75 -0.28 -10.98 16 11 O -0.35 -7.07 7.96 -39.27 -0.31 -7.38 16 12 C 0.07 1.66 5.40 37.16 0.20 1.86 16 13 C 0.03 0.69 5.35 -27.88 -0.15 0.55 16 14 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.05 0.82 7.12 -51.93 -0.37 0.45 16 23 H 0.08 1.32 6.44 -51.93 -0.33 0.99 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.72 7.86 -51.93 -0.41 0.31 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.19 6.83 -51.93 -0.35 0.84 16 30 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 31 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 305.42 15.07 4.60 4.60 Total: -1.00 -30.60 305.42 -7.24 -37.84 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.46 Total: -2.75 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.50 Total: -12.14 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.60 Total: -18.36 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.60 -7.24 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.366 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds