Wall clock time and date at job start Sun Mar 29 2020 22:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.54092 * 2 1 4 4 C 1.54891 * 110.48515 * 122.60927 * 2 1 3 5 5 C 1.54899 * 102.91276 * 80.82899 * 4 2 1 6 6 C 1.54268 * 104.19526 * 37.84857 * 5 4 2 7 7 C 1.53005 * 110.02870 * 95.67483 * 6 5 4 8 8 C 1.50697 * 110.03258 * 217.10473 * 6 5 4 9 9 O 1.21213 * 119.99598 * 6.60375 * 8 6 5 10 10 O 1.34316 * 120.00141 * 186.60745 * 8 6 5 11 11 C 1.34911 * 116.99812 * 180.02562 * 10 8 6 12 12 H 1.08001 * 120.00755 * 359.97438 * 11 10 8 13 13 C 1.38753 * 119.99898 * 180.02562 * 11 10 8 14 14 N 1.31447 * 119.99880 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00228 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47171 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47183 * 119.99583 * 15 13 11 18 18 H 1.48494 * 109.47332 * 239.99452 * 15 13 11 19 19 C 1.53870 * 106.59882 * 336.38951 * 6 5 4 20 20 C 1.53000 * 110.03088 * 119.28560 * 19 6 5 21 21 C 1.52997 * 110.03538 * 240.71343 * 19 6 5 22 22 H 1.08997 * 109.46945 * 298.84303 * 1 2 3 23 23 H 1.09003 * 109.47342 * 58.84361 * 1 2 3 24 24 H 1.08999 * 109.47485 * 178.84117 * 1 2 3 25 25 H 1.08992 * 110.75734 * 322.42184 * 4 2 1 26 26 H 1.08999 * 110.75757 * 199.23330 * 4 2 1 27 27 H 1.09001 * 110.48068 * 156.52933 * 5 4 2 28 28 H 1.08996 * 110.48605 * 279.04051 * 5 4 2 29 29 H 1.08995 * 109.47403 * 61.45596 * 7 6 5 30 30 H 1.09008 * 109.46655 * 181.45459 * 7 6 5 31 31 H 1.09002 * 109.47316 * 301.44871 * 7 6 5 32 32 H 0.97004 * 119.99577 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47341 * 60.00057 * 20 19 6 34 34 H 1.09002 * 109.47357 * 180.02562 * 20 19 6 35 35 H 1.09004 * 109.47133 * 299.99820 * 20 19 6 36 36 H 1.08997 * 109.46818 * 53.90856 * 21 19 6 37 37 H 1.08998 * 109.47806 * 173.91163 * 21 19 6 38 38 H 1.09009 * 109.47206 * 293.91338 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7819 1.2222 5 6 1.9678 -2.2576 0.7631 6 6 2.3487 -2.2167 -0.7313 7 6 3.8326 -2.5476 -0.9031 8 6 1.5073 -3.1982 -1.5056 9 8 0.5997 -3.7842 -0.9559 10 8 1.7630 -3.4237 -2.8047 11 6 0.9721 -4.3137 -3.4391 12 1 0.1765 -4.8084 -2.9018 13 6 1.1814 -4.5943 -4.7818 14 7 2.1500 -3.9926 -5.4357 15 14 0.0868 -5.8271 -5.6601 16 1 -0.9205 -6.3608 -4.7084 17 1 -0.6056 -5.1573 -6.7903 18 1 0.9165 -6.9436 -6.1798 19 6 2.0685 -0.7839 -1.2172 20 6 3.3614 -0.1387 -1.7201 21 6 1.0233 -0.8042 -2.3344 22 1 -0.3633 0.4958 0.9002 23 1 -0.3634 0.5317 -0.8794 24 1 -0.3634 -1.0274 -0.0208 25 1 1.4506 -0.6057 2.1001 26 1 3.1087 -0.5126 1.4243 27 1 2.6689 -2.8804 1.3186 28 1 0.9495 -2.6253 0.8893 29 1 4.0254 -3.5548 -0.5338 30 1 4.0976 -2.4908 -1.9589 31 1 4.4320 -1.8328 -0.3391 32 1 2.2961 -4.1885 -6.3745 33 1 3.7626 -0.7253 -2.5466 34 1 3.1528 0.8752 -2.0614 35 1 4.0902 -0.1063 -0.9102 36 1 0.1370 -1.3389 -1.9929 37 1 0.7521 0.2182 -2.5971 38 1 1.4363 -1.3068 -3.2092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838440468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:42 Heat of formation + Delta-G solvation = -101.656616 kcal Electronic energy + Delta-G solvation = -19017.155152 eV Core-core repulsion = 16245.232981 eV Total energy + Delta-G solvation = -2771.922171 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49185 -37.97784 -35.02042 -32.52710 -31.99659 -31.77271 -27.86382 -27.22096 -25.29738 -23.76192 -23.43714 -21.34099 -19.14639 -17.81273 -17.53050 -15.83338 -15.52337 -15.20967 -14.44171 -14.27733 -14.05290 -13.27732 -13.11522 -12.66393 -12.44769 -12.33577 -12.14831 -11.76715 -11.62225 -11.34498 -11.29514 -11.12169 -11.07826 -10.63904 -10.37585 -10.36633 -10.27132 -10.17638 -10.08428 -9.89837 -9.72698 -9.60651 -8.74063 -8.49590 -6.34343 -4.00680 3.13803 3.22434 3.29467 3.64427 4.00465 4.58133 4.77173 4.86886 5.18024 5.21224 5.48143 5.56022 5.63731 5.66453 5.74570 5.80188 5.87419 5.99090 6.03550 6.09906 6.14562 6.23181 6.27646 6.33939 6.42246 6.45094 6.51048 6.58272 6.64664 6.72801 6.79422 6.86996 7.01311 7.20635 7.48126 8.03986 8.82320 9.15824 9.98440 10.83817 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.007898 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.556156 B = 3544.327932 C = 3620.315508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.110 4.110 6 C -0.041 4.041 7 C -0.137 4.137 8 C 0.418 3.582 9 O -0.560 6.560 10 O -0.210 6.210 11 C -0.379 4.379 12 H 0.092 0.908 13 C 0.042 3.958 14 N -0.866 5.866 15 Si 0.936 3.064 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.045 4.045 20 C -0.139 4.139 21 C -0.152 4.152 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.267 0.733 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.950 7.950 8.200 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.042 4.042 7 C -0.194 4.194 8 C 0.265 3.735 9 O -0.457 6.457 10 O -0.117 6.117 11 C -0.456 4.456 12 H 0.110 0.890 13 C -0.161 4.161 14 N -0.504 5.504 15 Si 0.761 3.239 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.045 4.045 20 C -0.196 4.196 21 C -0.209 4.209 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.809 7.790 8.094 11.378 hybrid contribution -0.535 -0.685 -0.509 1.007 sum 1.274 7.104 7.586 10.470 Atomic orbital electron populations 1.21883 0.95125 1.02488 1.00779 1.22038 0.95740 0.98354 0.94348 0.91113 1.22525 1.00383 0.95334 0.97268 1.22412 1.03286 0.96206 0.92804 1.20974 0.95496 0.93247 0.94484 1.21957 0.93356 1.00734 1.03320 1.22914 0.84486 0.83186 0.82926 1.90516 1.33197 1.51352 1.70649 1.83919 1.53420 1.53909 1.20413 1.21218 1.12691 1.18972 0.92707 0.89034 1.25248 0.97209 0.98079 0.95581 1.69997 1.29463 1.40983 1.09915 0.85709 0.79431 0.79518 0.79193 1.19089 1.20295 1.20309 1.21109 0.96093 0.92199 0.95119 1.22006 0.96448 0.99895 1.01226 1.22211 0.98602 1.00872 0.99222 0.93475 0.92493 0.91879 0.91749 0.91799 0.91778 0.89580 0.93031 0.90688 0.92100 0.92359 0.91376 0.93225 0.92698 0.92345 0.93449 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 7.88 37.16 0.29 -1.80 16 2 C -0.09 -1.22 3.03 -88.85 -0.27 -1.49 16 3 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 4 C -0.12 -1.57 6.38 -24.73 -0.16 -1.73 16 5 C -0.11 -1.83 5.40 -25.07 -0.14 -1.96 16 6 C -0.04 -0.77 0.88 -154.54 -0.14 -0.91 16 7 C -0.14 -2.36 7.05 37.16 0.26 -2.10 16 8 C 0.42 10.35 4.56 36.00 0.16 10.52 16 9 O -0.56 -15.21 14.63 -19.05 -0.28 -15.49 16 10 O -0.21 -5.87 7.58 -20.69 -0.16 -6.02 16 11 C -0.38 -11.19 9.64 30.92 0.30 -10.89 16 12 H 0.09 2.77 6.86 -52.49 -0.36 2.41 16 13 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 14 N -0.87 -25.15 13.67 55.48 0.76 -24.40 16 15 Si 0.94 21.55 29.55 -169.99 -5.02 16.52 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 C -0.04 -0.76 0.86 -153.29 -0.13 -0.89 16 20 C -0.14 -2.06 7.18 37.16 0.27 -1.80 16 21 C -0.15 -2.96 6.03 37.16 0.22 -2.73 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.80 6.84 -51.93 -0.36 0.44 16 24 H 0.06 1.07 6.85 -51.93 -0.36 0.71 16 25 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.98 7.84 -51.93 -0.41 0.58 16 28 H 0.09 1.62 6.39 -51.93 -0.33 1.29 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.41 6.70 -51.92 -0.35 1.07 16 31 H 0.06 0.85 6.65 -51.93 -0.35 0.50 16 32 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.07 1.13 6.78 -51.93 -0.35 0.77 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 36 H 0.06 1.24 5.82 -51.93 -0.30 0.94 16 37 H 0.05 0.79 7.57 -51.93 -0.39 0.40 16 38 H 0.08 1.94 6.49 -51.92 -0.34 1.60 16 LS Contribution 289.37 15.07 4.36 4.36 Total: -1.00 -31.43 289.37 -5.64 -37.08 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.89 Total: 2.64 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 0.58 Total: -14.69 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.76 Total: -24.40 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.44 Total: -21.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.43 -5.64 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838440468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.581 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds