Wall clock time and date at job start Sun Mar 29 2020 22:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.54092 * 2 1 4 4 C 1.54891 * 110.48515 * 122.60927 * 2 1 3 5 5 C 1.54899 * 102.91276 * 80.82899 * 4 2 1 6 6 C 1.54268 * 104.19526 * 37.84857 * 5 4 2 7 7 C 1.53005 * 110.02870 * 95.67483 * 6 5 4 8 8 C 1.50697 * 110.03258 * 217.10473 * 6 5 4 9 9 O 1.21213 * 119.99598 * 6.60375 * 8 6 5 10 10 O 1.34316 * 120.00141 * 186.60745 * 8 6 5 11 11 C 1.34911 * 116.99812 * 180.02562 * 10 8 6 12 12 H 1.08001 * 120.00755 * 359.97438 * 11 10 8 13 13 C 1.38753 * 119.99898 * 180.02562 * 11 10 8 14 14 N 1.31447 * 119.99880 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00228 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47171 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47183 * 119.99583 * 15 13 11 18 18 H 1.48494 * 109.47332 * 239.99452 * 15 13 11 19 19 C 1.53870 * 106.59882 * 336.38951 * 6 5 4 20 20 C 1.53000 * 110.03088 * 119.28560 * 19 6 5 21 21 C 1.52997 * 110.03538 * 240.71343 * 19 6 5 22 22 H 1.08997 * 109.46945 * 298.84303 * 1 2 3 23 23 H 1.09003 * 109.47342 * 58.84361 * 1 2 3 24 24 H 1.08999 * 109.47485 * 178.84117 * 1 2 3 25 25 H 1.08992 * 110.75734 * 322.42184 * 4 2 1 26 26 H 1.08999 * 110.75757 * 199.23330 * 4 2 1 27 27 H 1.09001 * 110.48068 * 156.52933 * 5 4 2 28 28 H 1.08996 * 110.48605 * 279.04051 * 5 4 2 29 29 H 1.08995 * 109.47403 * 61.45596 * 7 6 5 30 30 H 1.09008 * 109.46655 * 181.45459 * 7 6 5 31 31 H 1.09002 * 109.47316 * 301.44871 * 7 6 5 32 32 H 0.97004 * 119.99577 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47341 * 60.00057 * 20 19 6 34 34 H 1.09002 * 109.47357 * 180.02562 * 20 19 6 35 35 H 1.09004 * 109.47133 * 299.99820 * 20 19 6 36 36 H 1.08997 * 109.46818 * 53.90856 * 21 19 6 37 37 H 1.08998 * 109.47806 * 173.91163 * 21 19 6 38 38 H 1.09009 * 109.47206 * 293.91338 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7819 1.2222 5 6 1.9678 -2.2576 0.7631 6 6 2.3487 -2.2167 -0.7313 7 6 3.8326 -2.5476 -0.9031 8 6 1.5073 -3.1982 -1.5056 9 8 0.5997 -3.7842 -0.9559 10 8 1.7630 -3.4237 -2.8047 11 6 0.9721 -4.3137 -3.4391 12 1 0.1765 -4.8084 -2.9018 13 6 1.1814 -4.5943 -4.7818 14 7 2.1500 -3.9926 -5.4357 15 14 0.0868 -5.8271 -5.6601 16 1 -0.9205 -6.3608 -4.7084 17 1 -0.6056 -5.1573 -6.7903 18 1 0.9165 -6.9436 -6.1798 19 6 2.0685 -0.7839 -1.2172 20 6 3.3614 -0.1387 -1.7201 21 6 1.0233 -0.8042 -2.3344 22 1 -0.3633 0.4958 0.9002 23 1 -0.3634 0.5317 -0.8794 24 1 -0.3634 -1.0274 -0.0208 25 1 1.4506 -0.6057 2.1001 26 1 3.1087 -0.5126 1.4243 27 1 2.6689 -2.8804 1.3186 28 1 0.9495 -2.6253 0.8893 29 1 4.0254 -3.5548 -0.5338 30 1 4.0976 -2.4908 -1.9589 31 1 4.4320 -1.8328 -0.3391 32 1 2.2961 -4.1885 -6.3745 33 1 3.7626 -0.7253 -2.5466 34 1 3.1528 0.8752 -2.0614 35 1 4.0902 -0.1063 -0.9102 36 1 0.1370 -1.3389 -1.9929 37 1 0.7521 0.2182 -2.5971 38 1 1.4363 -1.3068 -3.2092 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838440468.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:42 Heat of formation + Delta-G solvation = -120.170965 kcal Electronic energy + Delta-G solvation = -19017.957994 eV Core-core repulsion = 16245.232981 eV Total energy + Delta-G solvation = -2772.725013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.08992 -39.78457 -37.11826 -34.33541 -33.66509 -33.16376 -29.23460 -28.58223 -27.41134 -25.23692 -24.70553 -23.05107 -20.49060 -19.84288 -19.41237 -17.62015 -17.03670 -16.90322 -16.25934 -15.96102 -15.64332 -14.84323 -14.59292 -14.12236 -13.81322 -13.73936 -13.63835 -13.50926 -13.15280 -12.99310 -12.74984 -12.66559 -12.44981 -12.28455 -12.20499 -12.04760 -11.99145 -11.49940 -11.40916 -11.31847 -11.21090 -11.08514 -10.67296 -10.65119 -8.51625 -6.29247 1.29054 1.30725 1.47984 1.70917 2.11650 2.80669 2.98732 3.48765 3.56304 3.86879 4.22063 4.24817 4.32435 4.36420 4.46304 4.57675 4.62356 4.69659 4.74851 4.81185 4.92760 4.93307 4.98188 5.04717 5.06595 5.15557 5.17617 5.25707 5.27665 5.33582 5.35149 5.40781 5.54121 5.60240 5.66033 5.87055 6.74332 6.94551 7.86626 8.68799 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.007898 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.556156 B = 3544.327932 C = 3620.315508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.106 0.894 4 C -0.104 4.104 5 C -0.111 4.111 6 C -0.044 4.044 7 C -0.131 4.131 8 C 0.414 3.586 9 O -0.594 6.594 10 O -0.231 6.231 11 C -0.418 4.418 12 H 0.070 0.930 13 C -0.001 4.001 14 N -0.898 5.898 15 Si 1.008 2.992 16 H -0.269 1.269 17 H -0.260 1.260 18 H -0.259 1.259 19 C -0.046 4.046 20 C -0.134 4.134 21 C -0.142 4.142 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.024 0.976 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.276 0.724 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 9.766 9.389 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.124 0.876 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.046 4.046 7 C -0.188 4.188 8 C 0.262 3.738 9 O -0.492 6.492 10 O -0.138 6.138 11 C -0.494 4.494 12 H 0.088 0.912 13 C -0.201 4.201 14 N -0.536 5.536 15 Si 0.828 3.172 16 H -0.194 1.194 17 H -0.184 1.184 18 H -0.184 1.184 19 C -0.047 4.047 20 C -0.191 4.191 21 C -0.199 4.199 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.838 9.620 9.291 13.672 hybrid contribution -0.887 -1.243 -0.847 1.746 sum 1.952 8.377 8.444 12.053 Atomic orbital electron populations 1.21870 0.95891 1.00363 1.02116 1.22079 0.95119 0.99736 0.92961 0.87573 1.22542 1.02695 0.91673 0.97238 1.22437 1.01706 0.99525 0.91187 1.21291 0.95354 0.92839 0.95069 1.21957 0.92569 1.01731 1.02574 1.24316 0.84332 0.83034 0.82078 1.90475 1.34907 1.52821 1.71032 1.83961 1.53653 1.54112 1.22112 1.21306 1.13579 1.20623 0.93877 0.91188 1.26354 0.98542 0.99695 0.95517 1.70077 1.30699 1.42084 1.10691 0.84704 0.77488 0.77155 0.77884 1.19374 1.18431 1.18376 1.21218 0.96541 0.91452 0.95455 1.21977 0.95580 1.00131 1.01404 1.22079 0.98079 1.01212 0.98564 0.90691 0.92702 0.95677 0.89749 0.88655 0.90439 0.92717 0.93794 0.93006 0.87471 0.91439 0.94021 0.91193 0.89535 0.95488 0.90823 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 7.88 71.98 0.57 -3.38 16 2 C -0.08 -2.00 3.03 -9.65 -0.03 -2.03 16 3 H 0.11 2.01 7.84 -2.39 -0.02 1.99 16 4 C -0.10 -2.32 6.38 31.89 0.20 -2.12 16 5 C -0.11 -3.56 5.40 31.67 0.17 -3.39 16 6 C -0.04 -1.68 0.88 -52.20 -0.05 -1.73 16 7 C -0.13 -4.41 7.05 71.98 0.51 -3.90 16 8 C 0.41 21.69 4.56 71.24 0.32 22.02 16 9 O -0.59 -34.52 14.63 20.77 0.30 -34.21 16 10 O -0.23 -13.78 7.58 14.91 0.11 -13.67 16 11 C -0.42 -26.16 9.64 67.94 0.66 -25.50 16 12 H 0.07 4.56 6.86 -2.91 -0.02 4.54 16 13 C 0.00 -0.05 5.49 84.87 0.47 0.42 16 14 N -0.90 -53.69 13.67 21.63 0.30 -53.39 16 15 Si 1.01 45.04 29.55 68.60 2.03 47.07 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 C -0.05 -1.51 0.86 -51.39 -0.04 -1.55 16 20 C -0.13 -3.61 7.18 71.98 0.52 -3.09 16 21 C -0.14 -5.72 6.03 71.98 0.43 -5.29 16 22 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.48 6.84 -2.39 -0.02 1.46 16 24 H 0.02 0.85 6.85 -2.39 -0.02 0.84 16 25 H 0.08 1.61 8.05 -2.39 -0.02 1.60 16 26 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 2.23 7.84 -2.39 -0.02 2.21 16 28 H 0.05 2.10 6.39 -2.39 -0.02 2.09 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.98 6.70 -2.38 -0.02 1.96 16 31 H 0.11 2.57 6.65 -2.39 -0.02 2.56 16 32 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.04 1.34 6.78 -2.39 -0.02 1.33 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.78 6.70 -2.38 -0.02 1.76 16 36 H 0.03 1.21 5.82 -2.39 -0.01 1.20 16 37 H 0.07 2.47 7.57 -2.39 -0.02 2.45 16 38 H 0.04 1.88 6.49 -2.38 -0.02 1.86 16 Total: -1.00 -74.48 289.37 7.50 -66.97 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.04 Total: 16.78 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 3.73 Total: -29.55 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.30 Total: -53.39 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: 0.42 Total: -47.88 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.48 7.50 -66.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838440468.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.197 kcal (2) G-P(sol) polarization free energy of solvation -74.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds