Wall clock time and date at job start Sun Mar 29 2020 22:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34230 * 116.99659 * 270.00399 * 13 3 2 15 15 O 1.20831 * 120.00023 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00020 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.46986 * 59.99358 * 16 14 13 18 18 C 1.53002 * 109.46722 * 299.99987 * 16 14 13 19 19 C 1.52998 * 109.47537 * 179.97438 * 16 14 13 20 20 C 1.53779 * 113.61584 * 277.49956 * 19 16 14 21 21 C 1.53773 * 87.07878 * 220.01813 * 20 19 16 22 22 C 1.53772 * 87.08659 * 25.43156 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47571 * 59.99759 * 18 16 14 30 30 H 1.09000 * 109.46979 * 179.97438 * 18 16 14 31 31 H 1.09000 * 109.46877 * 299.99438 * 18 16 14 32 32 H 1.09005 * 112.84569 * 48.80349 * 19 16 14 33 33 H 1.09010 * 113.61002 * 334.56571 * 20 19 16 34 34 H 1.09001 * 113.61526 * 105.46422 * 20 19 16 35 35 H 1.09005 * 113.61281 * 270.88026 * 21 20 19 36 36 H 1.09004 * 113.69085 * 139.99251 * 21 20 19 37 37 H 1.08996 * 113.61839 * 220.02420 * 22 21 20 38 38 H 1.09001 * 113.69503 * 89.12576 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 8 1.6559 2.0918 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2189 2.7377 0.2651 16 6 0.0073 3.4227 2.5082 17 1 0.7244 4.1971 2.7807 18 6 -0.1029 2.4064 3.6466 19 6 -1.3609 4.0603 2.2587 20 6 -1.2848 5.4296 1.5631 21 6 -2.4155 5.8815 2.5023 22 6 -1.9277 4.8008 3.4815 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 0.8720 1.9526 3.8243 30 1 -0.4391 2.9108 4.5526 31 1 -0.8200 1.6321 3.3741 32 1 -2.0701 3.3732 1.7969 33 1 -0.3430 5.9525 1.7303 34 1 -1.5743 5.4025 0.5126 35 1 -3.4134 5.6936 2.1062 36 1 -2.2934 6.8977 2.8774 37 1 -2.7363 4.2659 3.9796 38 1 -1.1619 5.1504 4.1738 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838864811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:39 Heat of formation + Delta-G solvation = -93.342552 kcal Electronic energy + Delta-G solvation = -18039.538451 eV Core-core repulsion = 15267.976805 eV Total energy + Delta-G solvation = -2771.561646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.01642 -38.45002 -35.62407 -33.54599 -32.65491 -31.26919 -27.25940 -26.09961 -25.17296 -23.77518 -22.74296 -20.41980 -19.41023 -19.09370 -16.94057 -16.55021 -15.73839 -15.21993 -14.94817 -14.84940 -14.28669 -13.17684 -13.02804 -12.82702 -12.55383 -12.44017 -12.17253 -11.78968 -11.58678 -11.43383 -11.22091 -11.13268 -11.01162 -10.92721 -10.61014 -10.44095 -10.28746 -10.20204 -10.04777 -9.75572 -9.39688 -9.25286 -8.76290 -8.42409 -6.16222 -4.23034 3.13795 3.25484 3.31017 3.34799 3.74751 4.34750 4.66306 4.69804 4.80609 4.94163 5.15479 5.27746 5.36250 5.51301 5.68255 5.75681 5.78693 5.87444 5.92164 6.00789 6.11158 6.16369 6.25782 6.29976 6.36094 6.38335 6.51155 6.59942 6.91160 7.01302 7.20751 7.32785 7.65051 7.77954 8.01131 8.20466 8.71033 8.96573 9.42337 10.90558 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.036107 B = 0.005889 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.280356 B = 4753.787551 C = 4937.833302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.357 6.357 14 C 0.455 3.545 15 O -0.516 6.516 16 C -0.078 4.078 17 H 0.099 0.901 18 C -0.140 4.140 19 C -0.092 4.092 20 C -0.135 4.135 21 C -0.142 4.142 22 C -0.134 4.134 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.032 0.968 26 H 0.040 0.960 27 H 0.107 0.893 28 H 0.266 0.734 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 6.223 9.956 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.063 0.937 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.273 6.273 14 C 0.298 3.702 15 O -0.406 6.406 16 C -0.097 4.097 17 H 0.117 0.883 18 C -0.197 4.197 19 C -0.110 4.110 20 C -0.172 4.172 21 C -0.180 4.180 22 C -0.171 4.171 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.416 6.099 9.448 14.046 hybrid contribution 0.927 -0.143 -0.342 0.998 sum -7.489 5.955 9.106 13.209 Atomic orbital electron populations 1.21854 0.98416 0.98865 1.00770 1.22003 0.92605 0.99453 1.03227 1.20629 0.94890 0.88746 0.78923 0.93655 1.21058 0.89815 1.38799 1.06156 0.91424 1.24885 0.99162 0.94829 0.95085 1.69896 1.35318 1.37942 1.09474 0.86301 0.84029 0.78653 0.77317 1.20372 1.20992 1.19662 1.86466 1.34493 1.62496 1.43847 1.23272 0.80671 0.76842 0.89448 1.90582 1.55589 1.58483 1.35954 1.21041 0.97629 0.98424 0.92637 0.88273 1.21695 1.03179 0.98284 0.96584 1.22421 0.95416 0.96094 0.97084 1.22930 0.98698 0.96073 0.99533 1.22795 0.98809 0.98518 0.97858 1.22948 1.00399 0.97469 0.96324 0.94947 0.92881 0.94883 0.94084 0.87460 0.92443 0.91130 0.91739 0.92407 0.88430 0.90316 0.91102 0.90388 0.91701 0.91570 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.57 37.16 0.32 -2.84 16 2 C -0.13 -3.40 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.93 2.25 -27.88 -0.06 5.87 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.70 8.90 -34.44 -0.31 -15.00 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.31 11.29 55.43 0.63 -24.68 16 9 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 O -0.36 -8.53 9.71 -39.26 -0.38 -8.91 16 14 C 0.45 9.46 5.70 36.01 0.21 9.66 16 15 O -0.52 -11.90 12.99 -18.75 -0.24 -12.14 16 16 C -0.08 -1.18 2.58 -91.77 -0.24 -1.42 16 17 H 0.10 1.39 7.94 -51.93 -0.41 0.98 16 18 C -0.14 -1.84 8.93 37.16 0.33 -1.51 16 19 C -0.09 -1.23 2.54 -89.81 -0.23 -1.46 16 20 C -0.13 -1.74 7.60 -25.92 -0.20 -1.94 16 21 C -0.14 -1.46 8.08 -25.93 -0.21 -1.67 16 22 C -0.13 -1.37 6.68 -25.92 -0.17 -1.55 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 25 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 30 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.45 7.86 -51.93 -0.41 1.04 16 33 H 0.08 0.99 7.96 -51.92 -0.41 0.58 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 304.95 15.07 4.60 4.60 Total: -1.00 -29.79 304.95 -7.59 -37.38 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.37 Total: 1.38 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.80 Total: -13.77 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.63 Total: -24.68 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.62 Total: -21.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.79 -7.59 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838864811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.961 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds