Wall clock time and date at job start Sun Mar 29 2020 22:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 O 1.45201 * 109.47339 * 64.99923 * 3 2 1 14 14 C 1.34230 * 116.99659 * 270.00399 * 13 3 2 15 15 O 1.20831 * 120.00023 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00020 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.46986 * 59.99358 * 16 14 13 18 18 C 1.53002 * 109.46722 * 299.99987 * 16 14 13 19 19 C 1.52998 * 109.47537 * 179.97438 * 16 14 13 20 20 C 1.53779 * 113.61584 * 277.49956 * 19 16 14 21 21 C 1.53773 * 87.07878 * 220.01813 * 20 19 16 22 22 C 1.53772 * 87.08659 * 25.43156 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47571 * 59.99759 * 18 16 14 30 30 H 1.09000 * 109.46979 * 179.97438 * 18 16 14 31 31 H 1.09000 * 109.46877 * 299.99438 * 18 16 14 32 32 H 1.09005 * 112.84569 * 48.80349 * 19 16 14 33 33 H 1.09010 * 113.61002 * 334.56571 * 20 19 16 34 34 H 1.09001 * 113.61526 * 105.46422 * 20 19 16 35 35 H 1.09005 * 113.61281 * 270.88026 * 21 20 19 36 36 H 1.09004 * 113.69085 * 139.99251 * 21 20 19 37 37 H 1.08996 * 113.61839 * 220.02420 * 22 21 20 38 38 H 1.09001 * 113.69503 * 89.12576 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 8 1.6559 2.0918 1.2407 14 6 0.4727 2.7255 1.2559 15 8 -0.2189 2.7377 0.2651 16 6 0.0073 3.4227 2.5082 17 1 0.7244 4.1971 2.7807 18 6 -0.1029 2.4064 3.6466 19 6 -1.3609 4.0603 2.2587 20 6 -1.2848 5.4296 1.5631 21 6 -2.4155 5.8815 2.5023 22 6 -1.9277 4.8008 3.4815 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 0.8720 1.9526 3.8243 30 1 -0.4391 2.9108 4.5526 31 1 -0.8200 1.6321 3.3741 32 1 -2.0701 3.3732 1.7969 33 1 -0.3430 5.9525 1.7303 34 1 -1.5743 5.4025 0.5126 35 1 -3.4134 5.6936 2.1062 36 1 -2.2934 6.8977 2.8774 37 1 -2.7363 4.2659 3.9796 38 1 -1.1619 5.1504 4.1738 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838864811.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:39 Heat of formation + Delta-G solvation = -108.810066 kcal Electronic energy + Delta-G solvation = -18040.209173 eV Core-core repulsion = 15267.976805 eV Total energy + Delta-G solvation = -2772.232368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58977 -39.69246 -37.46558 -35.52000 -33.98122 -33.22869 -29.32123 -27.11245 -26.12794 -25.54644 -24.37745 -22.14554 -20.98973 -20.27407 -18.83058 -18.37783 -17.37054 -16.96965 -16.50804 -16.01063 -15.75118 -14.80854 -14.77286 -14.48172 -13.75581 -13.46738 -13.45866 -13.35411 -13.28064 -13.09208 -12.95851 -12.80655 -12.59168 -12.43186 -12.15197 -12.13343 -11.77221 -11.48710 -11.34786 -11.26137 -11.02364 -10.92045 -10.81275 -10.51775 -8.28024 -6.45054 1.40457 1.42538 1.46814 1.53911 2.10011 2.43352 3.01375 3.62259 3.70608 3.78758 4.00380 4.03676 4.30773 4.34663 4.37925 4.38344 4.46092 4.59156 4.81173 4.84583 4.88397 4.90443 4.95137 5.03801 5.08425 5.13112 5.17014 5.21015 5.30144 5.38409 5.42718 5.51974 5.64143 5.67160 5.99649 6.17837 6.60949 7.06980 7.28392 8.78792 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.036107 B = 0.005889 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.280356 B = 4753.787551 C = 4937.833302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.365 6.365 14 C 0.445 3.555 15 O -0.544 6.544 16 C -0.070 4.070 17 H 0.116 0.884 18 C -0.136 4.136 19 C -0.100 4.100 20 C -0.148 4.148 21 C -0.132 4.132 22 C -0.116 4.116 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.270 0.730 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 6.773 12.076 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.282 6.282 14 C 0.290 3.710 15 O -0.435 6.435 16 C -0.089 4.089 17 H 0.134 0.866 18 C -0.193 4.193 19 C -0.119 4.119 20 C -0.185 4.185 21 C -0.169 4.169 22 C -0.153 4.153 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.394 6.655 11.585 15.778 hybrid contribution 0.857 -0.280 -1.046 1.381 sum -7.537 6.375 10.539 14.440 Atomic orbital electron populations 1.21698 0.96309 1.00481 1.00041 1.21844 0.94434 0.98158 1.02196 1.20313 0.94451 0.89270 0.78872 0.97990 1.21344 0.90626 1.39915 1.06875 0.91733 1.25815 1.04278 0.93864 0.94317 1.70022 1.37450 1.38002 1.09870 0.85213 0.77676 0.79135 0.77582 1.19130 1.20288 1.19041 1.86465 1.36415 1.63144 1.42182 1.24570 0.79232 0.76017 0.91175 1.90568 1.55970 1.59357 1.37624 1.21258 0.98745 0.98751 0.90165 0.86630 1.21718 1.02658 0.97849 0.97046 1.22477 0.94036 0.95797 0.99563 1.23024 1.00219 0.96510 0.98759 1.22759 0.97764 0.99679 0.96679 1.22921 1.00958 0.96291 0.95178 0.92041 0.94827 0.94322 0.93623 0.89724 0.92064 0.92157 0.87849 0.92937 0.90378 0.90054 0.93627 0.90043 0.89835 0.89900 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.57 71.98 0.62 -5.16 16 2 C -0.13 -6.63 5.49 30.60 0.17 -6.46 16 3 C 0.22 12.54 2.25 29.85 0.07 12.61 16 4 H 0.00 0.15 7.16 -2.39 -0.02 0.13 16 5 C -0.55 -31.85 8.90 25.60 0.23 -31.62 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.92 -53.29 11.29 21.45 0.24 -53.05 16 9 Si 0.98 43.41 29.54 68.60 2.03 45.44 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 13 O -0.37 -17.94 9.71 -51.41 -0.50 -18.43 16 14 C 0.45 18.90 5.70 71.24 0.41 19.31 16 15 O -0.54 -26.15 12.99 21.95 0.29 -25.87 16 16 C -0.07 -2.05 2.58 -11.54 -0.03 -2.08 16 17 H 0.12 3.02 7.94 -2.39 -0.02 3.00 16 18 C -0.14 -3.25 8.93 71.98 0.64 -2.61 16 19 C -0.10 -2.57 2.54 -10.27 -0.03 -2.59 16 20 C -0.15 -3.72 7.60 31.12 0.24 -3.48 16 21 C -0.13 -2.36 8.08 31.11 0.25 -2.11 16 22 C -0.12 -1.97 6.68 31.12 0.21 -1.76 16 23 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.03 1.61 7.80 -2.39 -0.02 1.59 16 25 H 0.04 1.66 6.06 -2.38 -0.01 1.65 16 26 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 4.77 5.95 -2.39 -0.01 4.75 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.91 16 29 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 30 H 0.10 1.69 7.45 -2.39 -0.02 1.68 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 2.31 7.86 -2.38 -0.02 2.29 16 33 H 0.08 1.97 7.96 -2.38 -0.02 1.95 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -66.77 304.95 6.28 -60.49 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 1.01 Total: 16.00 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 3.22 Total: -24.57 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.24 Total: -53.05 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.21 Total: -44.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -66.77 6.28 -60.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838864811.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.322 kcal (2) G-P(sol) polarization free energy of solvation -66.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds