Wall clock time and date at job start Sun Mar 29 2020 22:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09011 * 109.47098 * 2 1 4 4 C 1.50697 * 109.47344 * 119.99824 * 2 1 3 5 5 H 1.08002 * 119.99730 * 120.00381 * 4 2 1 6 6 C 1.37875 * 120.00431 * 300.00291 * 4 2 1 7 7 N 1.31509 * 120.00110 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47265 * 89.99991 * 8 6 4 10 10 H 1.48498 * 109.46985 * 209.99876 * 8 6 4 11 11 H 1.48505 * 109.47000 * 329.99549 * 8 6 4 12 12 O 1.45199 * 109.47222 * 240.00483 * 2 1 3 13 13 C 1.34228 * 117.00436 * 89.99838 * 12 2 1 14 14 O 1.20826 * 120.00050 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00108 * 179.97438 * 13 12 2 16 16 H 1.08992 * 109.47284 * 300.00185 * 15 13 12 17 17 C 1.53002 * 109.46958 * 60.00103 * 15 13 12 18 18 C 1.52997 * 109.46978 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.47164 * 299.99874 * 18 17 15 20 20 H 1.08998 * 109.46505 * 299.99708 * 19 18 17 21 21 C 1.52992 * 109.47223 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47127 * 59.99836 * 19 18 17 23 23 C 1.52996 * 109.46990 * 179.97438 * 15 13 12 24 24 H 1.09002 * 109.46661 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47261 * 299.99559 * 1 2 3 26 26 H 1.08997 * 109.46927 * 59.99979 * 1 2 3 27 27 H 0.97003 * 120.00016 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47097 * 299.99808 * 17 15 13 29 29 H 1.09001 * 109.47142 * 59.99773 * 17 15 13 30 30 H 1.09001 * 109.47375 * 59.99908 * 18 17 15 31 31 H 1.09000 * 109.47140 * 179.97438 * 18 17 15 32 32 H 1.09001 * 109.47066 * 299.99881 * 21 19 18 33 33 H 1.08996 * 109.47747 * 59.99547 * 21 19 18 34 34 H 1.09002 * 109.47103 * 179.97438 * 21 19 18 35 35 H 1.09002 * 109.47153 * 180.02562 * 22 19 18 36 36 H 1.09001 * 109.46832 * 60.00321 * 22 19 18 37 37 H 1.09004 * 109.47368 * 60.00232 * 23 15 13 38 38 H 1.09001 * 109.47372 * 300.00388 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8028 0.8724 2.6999 10 1 0.9758 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 8 2.0140 -0.6844 -1.1856 13 6 2.2172 0.0641 -2.2811 14 8 1.9974 1.2518 -2.2506 15 6 2.7194 -0.5769 -3.5492 16 1 3.6884 -1.0398 -3.3632 17 6 1.7244 -1.6440 -4.0099 18 6 2.2346 -2.2952 -5.2969 19 6 2.3796 -1.2294 -6.3851 20 1 1.4105 -0.7665 -6.5715 21 6 2.8891 -1.8807 -7.6722 22 6 3.3744 -0.1622 -5.9244 23 6 2.8632 0.4892 -4.6372 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9027 -0.5285 4.4375 28 1 1.6215 -2.4036 -3.2349 29 1 0.7553 -1.1811 -4.1959 30 1 3.2036 -2.7582 -5.1105 31 1 1.5260 -3.0558 -5.6249 32 1 3.8581 -2.3440 -7.4861 33 1 2.1801 -2.6407 -8.0003 34 1 2.9920 -1.1214 -8.4476 35 1 3.4774 0.5973 -6.6994 36 1 4.3434 -0.6253 -5.7379 37 1 3.5719 1.2497 -4.3092 38 1 1.8939 0.9518 -4.8230 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845468099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:11 Heat of formation + Delta-G solvation = -119.839452 kcal Electronic energy + Delta-G solvation = -17764.138896 eV Core-core repulsion = 14991.428258 eV Total energy + Delta-G solvation = -2772.710638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11179 -38.29400 -35.87679 -33.27192 -32.73688 -30.83315 -30.53486 -27.11051 -25.26022 -23.06986 -22.63393 -21.11415 -19.97052 -19.37636 -17.27930 -16.52217 -15.97586 -15.45598 -14.99962 -14.38987 -14.32510 -14.06526 -13.41610 -13.25153 -12.79042 -12.65869 -12.34970 -12.26914 -12.23083 -11.79663 -11.55906 -11.46924 -11.14516 -10.98395 -10.89156 -10.72061 -10.38813 -10.22053 -10.05664 -9.86704 -9.73385 -9.46305 -9.10967 -8.68290 -6.22276 -4.24409 2.88000 3.18805 3.31067 3.33587 3.52661 4.27078 4.58726 4.61647 4.72718 5.02186 5.05242 5.09370 5.34341 5.35245 5.43794 5.46340 5.50042 5.56835 5.68485 5.80010 5.83761 6.00499 6.04631 6.11177 6.15667 6.17282 6.20098 6.28658 6.34412 6.42068 6.43852 6.62448 7.04864 7.39245 7.54787 8.25389 8.64002 8.85240 9.35203 10.89913 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.051525 B = 0.005229 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.300181 B = 5353.548428 C = 5522.647537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.189 3.811 3 H 0.045 0.955 4 C -0.524 4.524 5 H 0.087 0.913 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.880 3.120 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.263 1.263 12 O -0.340 6.340 13 C 0.455 3.545 14 O -0.524 6.524 15 C -0.080 4.080 16 H 0.104 0.896 17 C -0.111 4.111 18 C -0.111 4.111 19 C -0.096 4.096 20 H 0.070 0.930 21 C -0.147 4.147 22 C -0.112 4.112 23 C -0.103 4.103 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.269 0.731 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 -1.185 -19.132 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.135 3.865 3 H 0.062 0.938 4 C -0.562 4.562 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.709 3.291 9 H -0.200 1.200 10 H -0.217 1.217 11 H -0.188 1.188 12 O -0.256 6.256 13 C 0.298 3.702 14 O -0.414 6.414 15 C -0.099 4.099 16 H 0.122 0.878 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.115 4.115 20 H 0.088 0.912 21 C -0.204 4.204 22 C -0.150 4.150 23 C -0.141 4.141 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.084 -0.852 -18.855 18.874 hybrid contribution -0.671 0.910 0.421 1.206 sum -0.586 0.058 -18.434 18.444 Atomic orbital electron populations 1.22509 0.98552 1.01787 0.99741 1.20904 0.90436 0.94433 0.80692 0.93758 1.20793 1.33320 1.14780 0.87300 0.89526 1.24730 0.95661 0.96717 0.95255 1.69839 1.44808 1.39969 0.97987 0.86964 0.80765 0.83669 0.77736 1.20004 1.21683 1.18757 1.86509 1.75592 1.42788 1.20683 1.23560 0.74601 0.85920 0.86135 1.90580 1.48932 1.17097 1.84838 1.21038 1.01265 0.97436 0.90208 0.87816 1.21510 0.97864 0.97554 0.97947 1.21595 1.01625 0.97440 0.94221 1.21199 0.99377 0.96090 0.94825 0.91179 1.21825 1.01127 1.00425 0.97016 1.21614 0.98762 0.97801 0.96787 1.21425 1.02683 0.96717 0.93259 0.91811 0.92607 0.94505 0.92087 0.90110 0.91607 0.91588 0.91624 0.92689 0.92811 0.92876 0.91718 0.91749 0.91099 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.03 37.16 0.34 -3.57 16 2 C 0.19 4.86 2.15 -27.88 -0.06 4.80 16 3 H 0.04 1.21 6.22 -51.92 -0.32 0.88 16 4 C -0.52 -15.20 9.48 -34.44 -0.33 -15.53 16 5 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 6 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 7 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.88 21.91 24.37 -169.99 -4.14 17.77 16 9 H -0.27 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 12 O -0.34 -7.85 9.77 -39.25 -0.38 -8.24 16 13 C 0.45 9.13 7.23 36.01 0.26 9.39 16 14 O -0.52 -11.82 15.20 -18.75 -0.29 -12.10 16 15 C -0.08 -1.16 2.63 -91.77 -0.24 -1.40 16 16 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 17 C -0.11 -1.40 5.13 -26.73 -0.14 -1.53 16 18 C -0.11 -1.09 5.20 -26.73 -0.14 -1.23 16 19 C -0.10 -0.88 2.72 -90.62 -0.25 -1.12 16 20 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 21 C -0.15 -1.11 9.19 37.15 0.34 -0.77 16 22 C -0.11 -1.09 5.21 -26.71 -0.14 -1.23 16 23 C -0.10 -1.31 4.50 -26.71 -0.12 -1.43 16 24 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.06 1.31 3.27 -51.93 -0.17 1.14 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 299.58 15.07 4.51 4.51 Total: -1.00 -31.31 299.58 -6.52 -37.84 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.43 Total: -2.20 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.57 Total: -11.43 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.67 Total: -20.34 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.14 Total: 17.77 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.31 -6.52 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.002 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds