Wall clock time and date at job start Sun Mar 29 2020 22:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09011 * 109.47098 * 2 1 4 4 C 1.50697 * 109.47344 * 119.99824 * 2 1 3 5 5 H 1.08002 * 119.99730 * 120.00381 * 4 2 1 6 6 C 1.37875 * 120.00431 * 300.00291 * 4 2 1 7 7 N 1.31509 * 120.00110 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47265 * 89.99991 * 8 6 4 10 10 H 1.48498 * 109.46985 * 209.99876 * 8 6 4 11 11 H 1.48505 * 109.47000 * 329.99549 * 8 6 4 12 12 O 1.45199 * 109.47222 * 240.00483 * 2 1 3 13 13 C 1.34228 * 117.00436 * 89.99838 * 12 2 1 14 14 O 1.20826 * 120.00050 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00108 * 179.97438 * 13 12 2 16 16 H 1.08992 * 109.47284 * 300.00185 * 15 13 12 17 17 C 1.53002 * 109.46958 * 60.00103 * 15 13 12 18 18 C 1.52997 * 109.46978 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.47164 * 299.99874 * 18 17 15 20 20 H 1.08998 * 109.46505 * 299.99708 * 19 18 17 21 21 C 1.52992 * 109.47223 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47127 * 59.99836 * 19 18 17 23 23 C 1.52996 * 109.46990 * 179.97438 * 15 13 12 24 24 H 1.09002 * 109.46661 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47261 * 299.99559 * 1 2 3 26 26 H 1.08997 * 109.46927 * 59.99979 * 1 2 3 27 27 H 0.97003 * 120.00016 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47097 * 299.99808 * 17 15 13 29 29 H 1.09001 * 109.47142 * 59.99773 * 17 15 13 30 30 H 1.09001 * 109.47375 * 59.99908 * 18 17 15 31 31 H 1.09000 * 109.47140 * 179.97438 * 18 17 15 32 32 H 1.09001 * 109.47066 * 299.99881 * 21 19 18 33 33 H 1.08996 * 109.47747 * 59.99547 * 21 19 18 34 34 H 1.09002 * 109.47103 * 179.97438 * 21 19 18 35 35 H 1.09002 * 109.47153 * 180.02562 * 22 19 18 36 36 H 1.09001 * 109.46832 * 60.00321 * 22 19 18 37 37 H 1.09004 * 109.47368 * 60.00232 * 23 15 13 38 38 H 1.09001 * 109.47372 * 300.00388 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6247 1.2789 2.6542 9 1 -0.8028 0.8724 2.6999 10 1 0.9758 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 8 2.0140 -0.6844 -1.1856 13 6 2.2172 0.0641 -2.2811 14 8 1.9974 1.2518 -2.2506 15 6 2.7194 -0.5769 -3.5492 16 1 3.6884 -1.0398 -3.3632 17 6 1.7244 -1.6440 -4.0099 18 6 2.2346 -2.2952 -5.2969 19 6 2.3796 -1.2294 -6.3851 20 1 1.4105 -0.7665 -6.5715 21 6 2.8891 -1.8807 -7.6722 22 6 3.3744 -0.1622 -5.9244 23 6 2.8632 0.4892 -4.6372 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.9027 -0.5285 4.4375 28 1 1.6215 -2.4036 -3.2349 29 1 0.7553 -1.1811 -4.1959 30 1 3.2036 -2.7582 -5.1105 31 1 1.5260 -3.0558 -5.6249 32 1 3.8581 -2.3440 -7.4861 33 1 2.1801 -2.6407 -8.0003 34 1 2.9920 -1.1214 -8.4476 35 1 3.4774 0.5973 -6.6994 36 1 4.3434 -0.6253 -5.7379 37 1 3.5719 1.2497 -4.3092 38 1 1.8939 0.9518 -4.8230 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845468099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:11 Heat of formation + Delta-G solvation = -137.942629 kcal Electronic energy + Delta-G solvation = -17764.923908 eV Core-core repulsion = 14991.428258 eV Total energy + Delta-G solvation = -2773.495651 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67046 -39.41775 -37.63797 -35.32254 -33.83019 -32.58233 -31.68862 -28.04120 -27.36620 -24.48472 -23.56173 -22.63184 -21.17866 -20.61595 -19.17422 -18.44404 -17.66159 -17.02112 -16.58749 -15.65448 -15.20816 -15.13658 -15.08235 -14.57340 -14.36990 -14.19510 -13.93480 -13.54038 -13.32588 -13.14986 -13.04787 -12.88216 -12.38650 -12.25417 -12.02415 -11.94639 -11.79088 -11.67607 -11.58973 -11.30008 -11.25084 -10.97637 -10.92583 -10.85174 -8.46701 -6.55652 1.21281 1.26172 1.29274 1.38841 1.93447 2.17776 2.85892 3.56937 3.71480 3.73407 4.07304 4.15351 4.18966 4.24858 4.35345 4.39010 4.48160 4.51575 4.55776 4.66390 4.72241 4.85810 4.94289 5.03636 5.04943 5.14954 5.16255 5.19391 5.25301 5.31274 5.32285 5.45835 5.46815 5.62255 5.66570 6.13209 6.48089 6.87876 7.09843 8.69356 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.051525 B = 0.005229 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.300181 B = 5353.548428 C = 5522.647537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.191 3.809 3 H 0.028 0.972 4 C -0.540 4.540 5 H 0.047 0.953 6 C 0.032 3.968 7 N -0.929 5.929 8 Si 0.941 3.059 9 H -0.250 1.250 10 H -0.281 1.281 11 H -0.260 1.260 12 O -0.352 6.352 13 C 0.449 3.551 14 O -0.550 6.550 15 C -0.074 4.074 16 H 0.117 0.883 17 C -0.108 4.108 18 C -0.106 4.106 19 C -0.095 4.095 20 H 0.068 0.932 21 C -0.143 4.143 22 C -0.106 4.106 23 C -0.099 4.099 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.276 0.724 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -0.837 -21.117 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.136 3.864 3 H 0.045 0.955 4 C -0.578 4.578 5 H 0.065 0.935 6 C -0.168 4.168 7 N -0.567 5.567 8 Si 0.766 3.234 9 H -0.175 1.175 10 H -0.208 1.208 11 H -0.185 1.185 12 O -0.268 6.268 13 C 0.294 3.706 14 O -0.442 6.442 15 C -0.093 4.093 16 H 0.135 0.865 17 C -0.146 4.146 18 C -0.143 4.143 19 C -0.114 4.114 20 H 0.086 0.914 21 C -0.200 4.200 22 C -0.143 4.143 23 C -0.137 4.137 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.679 -0.519 -20.862 20.880 hybrid contribution -0.343 0.756 1.019 1.314 sum -1.022 0.236 -19.843 19.871 Atomic orbital electron populations 1.22392 0.96268 1.02630 1.00632 1.20620 0.92112 0.92953 0.80704 0.95471 1.20949 1.33393 1.14004 0.89454 0.93500 1.25553 0.96862 0.99814 0.94608 1.69954 1.46141 1.41863 0.98779 0.85975 0.79964 0.79561 0.77917 1.17472 1.20798 1.18513 1.86513 1.76084 1.43245 1.20964 1.24742 0.73565 0.85768 0.86535 1.90556 1.50109 1.18320 1.85165 1.21255 1.02034 0.98360 0.87656 0.86496 1.21520 0.97301 0.96606 0.99188 1.21586 1.02237 0.97755 0.92724 1.21194 0.99192 0.95655 0.95329 0.91396 1.21784 1.01416 1.00692 0.96123 1.21601 0.99163 0.98286 0.95253 1.21431 1.02114 0.96081 0.94086 0.91054 0.92594 0.92596 0.91475 0.91286 0.91919 0.90856 0.90241 0.92264 0.92188 0.92184 0.90288 0.90842 0.92168 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.32 9.03 71.98 0.65 -6.67 16 2 C 0.19 9.88 2.15 29.85 0.06 9.94 16 3 H 0.03 1.50 6.22 -2.38 -0.01 1.49 16 4 C -0.54 -32.23 9.48 25.60 0.24 -31.99 16 5 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 6 C 0.03 1.85 5.45 84.65 0.46 2.31 16 7 N -0.93 -57.24 13.96 21.45 0.30 -56.94 16 8 Si 0.94 44.72 24.37 68.60 1.67 46.39 16 9 H -0.25 -10.90 6.87 99.48 0.68 -10.22 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.26 -12.24 6.53 99.48 0.65 -11.59 16 12 O -0.35 -16.51 9.77 -51.40 -0.50 -17.01 16 13 C 0.45 18.06 7.23 71.24 0.51 18.57 16 14 O -0.55 -24.88 15.20 21.96 0.33 -24.55 16 15 C -0.07 -2.08 2.63 -11.54 -0.03 -2.11 16 16 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 17 C -0.11 -2.59 5.13 30.59 0.16 -2.43 16 18 C -0.11 -1.79 5.20 30.60 0.16 -1.64 16 19 C -0.10 -1.46 2.72 -10.79 -0.03 -1.49 16 20 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 21 C -0.14 -1.69 9.19 71.98 0.66 -1.03 16 22 C -0.11 -1.77 5.21 30.61 0.16 -1.61 16 23 C -0.10 -2.40 4.50 30.61 0.14 -2.26 16 24 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.06 2.50 3.27 -2.39 -0.01 2.50 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.07 1.80 8.11 -2.39 -0.02 1.79 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 38 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -68.33 299.58 5.88 -62.45 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.93 Total: 10.06 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 3.15 Total: -20.41 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.30 Total: -56.94 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.17 Total: -41.56 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.67 Total: 46.39 kcal Total: -68.33 5.88 -62.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845468099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.494 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds