Wall clock time and date at job start Sun Mar 29 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48493 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46858 * 299.99729 * 3 2 1 6 6 H 1.48500 * 109.47324 * 59.99624 * 3 2 1 7 7 C 1.37873 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47320 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47278 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47248 * 179.97438 * 11 10 9 13 13 O 1.20822 * 119.99804 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00053 * 180.02562 * 12 11 10 15 15 C 1.45198 * 116.99983 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46884 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46886 * 180.02562 * 17 16 15 19 19 C 1.53002 * 117.49654 * 243.73967 * 18 17 16 20 20 C 1.53012 * 117.49602 * 175.08431 * 18 17 16 21 21 H 0.97002 * 120.00668 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47146 * 59.99896 * 9 7 2 23 23 H 1.09001 * 109.47153 * 300.00518 * 9 7 2 24 24 H 1.08998 * 109.47230 * 59.99783 * 10 9 7 25 25 H 1.09004 * 109.46598 * 300.00057 * 10 9 7 26 26 H 1.09008 * 109.46866 * 59.99380 * 11 10 9 27 27 H 1.09001 * 109.47046 * 300.00263 * 11 10 9 28 28 H 1.09002 * 109.47379 * 59.99613 * 15 14 12 29 29 H 1.09001 * 109.46782 * 299.99696 * 15 14 12 30 30 H 1.09001 * 109.47194 * 299.99482 * 16 15 14 31 31 H 1.08992 * 109.47399 * 59.99654 * 16 15 14 32 32 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 33 33 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 34 34 H 1.08997 * 115.55341 * 29.41508 * 18 17 16 35 35 H 1.09000 * 117.49888 * 0.02562 * 19 18 17 36 36 H 1.08997 * 117.49823 * 145.01961 * 19 18 17 37 37 H 1.08998 * 117.49442 * 214.98050 * 20 18 17 38 38 H 1.08998 * 117.49828 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4806 -4.9871 0.0012 12 6 2.4599 -6.1324 0.0018 13 8 3.6478 -5.9116 0.0032 14 8 2.0126 -7.3980 0.0009 15 6 3.0126 -8.4507 0.0022 16 6 2.3181 -9.8139 0.0015 17 6 3.3719 -10.9232 0.0035 18 6 2.6773 -12.2864 0.0021 19 6 2.8894 -13.1884 1.2197 20 6 3.5617 -13.5298 -0.1125 21 1 -0.4851 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8902 24 1 2.8715 -3.6038 0.8922 25 1 2.8728 -3.6045 -0.8878 26 1 0.8548 -5.0449 -0.8895 27 1 0.8529 -5.0447 0.8905 28 1 3.6342 -8.3604 0.8930 29 1 3.6367 -8.3600 -0.8869 30 1 1.6943 -9.9044 0.8908 31 1 1.6963 -9.9045 -0.8891 32 1 3.9960 -10.8330 -0.8856 33 1 3.9934 -10.8324 0.8943 34 1 1.7015 -12.3165 -0.4827 35 1 3.5233 -12.8105 2.0217 36 1 2.0532 -13.8121 1.5357 37 1 3.1676 -14.3778 -0.6724 38 1 4.6383 -13.3765 -0.1865 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869550225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:12 Heat of formation + Delta-G solvation = -117.532807 kcal Electronic energy + Delta-G solvation = -16086.672704 eV Core-core repulsion = 13314.062089 eV Total energy + Delta-G solvation = -2772.610614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.51954 -38.74460 -37.76914 -36.16947 -34.30614 -33.98091 -30.14089 -27.98735 -25.92149 -23.30152 -23.04096 -22.52400 -21.52275 -21.14724 -18.73752 -18.39962 -17.88028 -17.14568 -16.54815 -16.44351 -16.13644 -15.35267 -15.19172 -14.52469 -14.09130 -14.00039 -13.86138 -13.32847 -13.15083 -12.70471 -12.67675 -12.52192 -12.45421 -12.41431 -12.25798 -11.99663 -11.67405 -11.62100 -11.46474 -11.39671 -11.19383 -11.03316 -10.76147 -10.54662 -8.20225 -6.30164 1.18361 1.40235 1.40659 1.54049 1.66780 2.41995 2.91713 3.13094 3.55419 3.87032 3.89140 3.99509 4.08728 4.10389 4.18358 4.19421 4.27464 4.47690 4.58715 4.65521 4.78153 4.81771 4.82739 4.90489 5.04413 5.07320 5.12715 5.16212 5.20623 5.28228 5.37878 5.47039 5.53871 5.73049 5.86219 6.26280 6.75091 6.85650 7.38556 8.91524 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.094734 B = 0.002739 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.493931 B =10220.543114 C =10402.347248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.106 4.106 12 C 0.469 3.531 13 O -0.542 6.542 14 O -0.359 6.359 15 C 0.057 3.943 16 C -0.106 4.106 17 C -0.083 4.083 18 C -0.159 4.159 19 C -0.185 4.185 20 C -0.182 4.182 21 H 0.265 0.735 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -25.179 0.274 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.124 4.124 11 C -0.143 4.143 12 C 0.314 3.686 13 O -0.432 6.432 14 O -0.276 6.276 15 C -0.016 4.016 16 C -0.144 4.144 17 C -0.121 4.121 18 C -0.177 4.177 19 C -0.222 4.222 20 C -0.219 4.219 21 H 0.073 0.927 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.115 -25.055 0.276 25.392 hybrid contribution 0.446 0.998 0.019 1.094 sum 4.561 -24.056 0.295 24.487 Atomic orbital electron populations 1.70072 1.07507 1.27755 1.51601 1.25918 0.95834 1.03133 0.94752 0.85431 0.78905 0.78971 0.77936 1.19131 1.20157 1.20171 1.21699 0.93416 0.92633 1.50631 0.92827 1.19025 0.94204 0.92150 0.95904 1.21277 0.97907 0.92242 1.01022 1.21515 0.97037 0.88622 1.07123 1.24196 0.89315 0.84219 0.70898 1.90630 1.19805 1.85746 1.46987 1.86506 1.41672 1.15647 1.83782 1.23298 0.90266 0.85604 1.02466 1.21502 0.98886 0.89739 1.04231 1.21046 0.96873 0.91359 1.02780 1.22312 1.00980 0.91043 1.03366 1.23142 1.03648 1.03609 0.91787 1.23066 0.99198 0.98957 1.00670 0.92658 0.97771 0.97786 0.93382 0.93381 0.86250 0.86259 0.91554 0.91432 0.90395 0.90186 0.90920 0.91318 0.87295 0.88698 0.88294 0.88102 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.70 4.44 30.59 0.14 -3.57 16 11 C -0.11 -3.47 5.81 29.85 0.17 -3.29 16 12 C 0.47 15.38 7.96 71.24 0.57 15.95 16 13 O -0.54 -21.07 15.73 21.98 0.35 -20.72 16 14 O -0.36 -9.90 10.22 -51.42 -0.53 -10.43 16 15 C 0.06 1.26 5.47 71.98 0.39 1.66 16 16 C -0.11 -1.68 5.55 30.59 0.17 -1.51 16 17 C -0.08 -1.10 5.49 30.59 0.17 -0.93 16 18 C -0.16 -1.94 5.73 -10.79 -0.06 -2.00 16 19 C -0.18 -2.11 10.18 30.62 0.31 -1.80 16 20 C -0.18 -2.00 10.26 30.62 0.31 -1.69 16 21 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 22 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 23 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 24 H 0.05 2.11 8.10 -2.39 -0.02 2.09 16 25 H 0.05 2.11 8.10 -2.38 -0.02 2.09 16 26 H 0.12 3.50 8.14 -2.38 -0.02 3.48 16 27 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 29 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.89 7.88 -2.39 -0.02 0.87 16 34 H 0.11 1.27 8.08 -2.39 -0.02 1.25 16 35 H 0.09 1.06 8.03 -2.39 -0.02 1.05 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.73 324.45 6.15 -60.58 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.00 Total: 6.16 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 3.02 Total: -26.65 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.28 Total: -55.83 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.18 Total: -31.15 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.73 6.15 -60.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869550225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.952 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds