Wall clock time and date at job start Sun Mar 29 2020 22:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09008 * 115.55369 * 154.27789 * 5 2 1 7 7 C 1.53006 * 117.49637 * 8.61195 * 5 2 1 8 8 C 1.53002 * 117.50091 * 299.98887 * 5 2 1 9 9 H 1.09000 * 117.49486 * 359.97438 * 8 5 2 10 10 C 1.50703 * 117.50126 * 214.97773 * 8 5 2 11 11 O 1.20827 * 119.99642 * 359.97438 * 10 8 5 12 12 O 1.34228 * 119.99817 * 179.97438 * 10 8 5 13 13 C 1.45199 * 116.99447 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.46699 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46834 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00390 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99879 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99788 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47063 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47198 * 119.99830 * 19 17 15 22 22 H 1.48502 * 109.46770 * 239.99519 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 32 32 H 1.08993 * 117.50087 * 359.97438 * 7 5 2 33 33 H 1.08995 * 117.49885 * 144.99842 * 7 5 2 34 34 H 1.08998 * 109.47560 * 300.00021 * 13 12 10 35 35 H 1.09003 * 109.47487 * 60.00395 * 13 12 10 36 36 H 1.08993 * 109.47497 * 299.99976 * 14 13 12 37 37 H 1.08999 * 109.46666 * 60.00648 * 14 13 12 38 38 H 0.97006 * 119.99918 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 3.0321 -0.4256 -1.5906 7 6 1.0104 -1.1020 -2.3149 8 6 1.6361 -2.1854 -1.4340 9 1 1.0072 -2.6348 -0.6654 10 6 2.6403 -3.1088 -2.0742 11 8 3.7171 -2.6838 -2.4201 12 8 2.3384 -4.4035 -2.2601 13 6 3.3534 -5.2340 -2.8831 14 6 2.8322 -6.6670 -3.0102 15 6 3.8855 -7.5289 -3.6574 16 1 4.8320 -7.0980 -3.9485 17 6 3.6406 -8.8678 -3.8779 18 7 2.4883 -9.3927 -3.5230 19 14 4.9465 -9.9364 -4.6794 20 1 6.1442 -9.1120 -4.9807 21 1 5.3218 -11.0364 -3.7552 22 1 4.4111 -10.5102 -5.9402 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 -1.7488 1.2493 30 1 3.1300 -0.7207 1.2495 31 1 1.6766 -0.2073 2.1393 32 1 -0.0303 -0.8390 -2.1260 33 1 1.3251 -1.0569 -3.3575 34 1 3.5859 -4.8424 -3.8734 35 1 4.2543 -5.2286 -2.2695 36 1 2.6001 -7.0584 -2.0199 37 1 1.9313 -6.6727 -3.6237 38 1 2.3161 -10.3347 -3.6778 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869649369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:34 Heat of formation + Delta-G solvation = -92.041777 kcal Electronic energy + Delta-G solvation = -16986.046109 eV Core-core repulsion = 14214.540869 eV Total energy + Delta-G solvation = -2771.505240 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37427 -38.72120 -36.04104 -34.00014 -33.32304 -30.28666 -27.64477 -27.47557 -25.78182 -24.07041 -23.03143 -20.96313 -20.09209 -18.55950 -17.52017 -16.43422 -15.93574 -15.89701 -15.45699 -14.56368 -14.36389 -14.04293 -13.50806 -13.32280 -12.72214 -12.53054 -12.47842 -12.36254 -11.89474 -11.80275 -11.39185 -11.27693 -11.18503 -11.01612 -10.78759 -10.75725 -10.68855 -10.39770 -10.15089 -10.12014 -9.62607 -9.58234 -9.27149 -8.44303 -6.10029 -4.14270 2.45893 3.11911 3.27808 3.35268 3.40613 3.72131 4.37755 4.46654 4.53133 4.65874 4.83593 4.94102 5.05145 5.26567 5.29260 5.32671 5.43122 5.47308 5.54405 5.60226 5.71480 5.74338 5.85505 5.88192 5.94263 6.04765 6.10634 6.12563 6.17095 6.22884 6.65083 7.03124 7.57371 7.63393 7.87774 8.21482 8.30881 8.91527 9.50095 11.01546 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.057527 B = 0.003766 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.610267 B = 7432.735180 C = 7541.028689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.040 4.040 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.110 4.110 6 H 0.118 0.882 7 C -0.150 4.150 8 C -0.161 4.161 9 H 0.132 0.868 10 C 0.484 3.516 11 O -0.520 6.520 12 O -0.353 6.353 13 C 0.075 3.925 14 C 0.024 3.976 15 C -0.526 4.526 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 19.258 7.273 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.128 4.128 6 H 0.136 0.864 7 C -0.187 4.187 8 C -0.180 4.180 9 H 0.150 0.850 10 C 0.328 3.672 11 O -0.410 6.410 12 O -0.269 6.269 13 C 0.002 3.998 14 C -0.013 4.013 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.527 19.160 7.155 20.947 hybrid contribution 0.804 -0.853 -0.505 1.276 sum -3.724 18.307 6.650 19.830 Atomic orbital electron populations 1.22050 0.94477 1.02128 1.01883 1.20107 0.95411 0.95157 0.93331 1.21831 1.01207 0.94750 1.01724 1.21879 1.01476 1.00430 0.96221 1.22559 1.00375 0.92765 0.97079 0.86401 1.23270 0.99501 0.99109 0.96816 1.21800 1.02067 0.89735 1.04420 0.84991 1.22484 0.86421 0.82517 0.75797 1.90609 1.24738 1.77230 1.48420 1.86514 1.47901 1.19850 1.72636 1.23645 0.88789 0.91624 0.95700 1.19175 0.97580 0.86039 0.98507 1.21026 1.00985 0.93888 1.40496 0.92211 1.24990 0.95723 0.97933 0.95548 1.69985 1.22671 1.13191 1.46990 0.86414 0.81581 0.80276 0.79044 1.19585 1.20817 1.20824 0.92233 0.92065 0.92487 0.92526 0.92443 0.92446 0.92310 0.92372 0.92569 0.86839 0.88217 0.92380 0.92354 0.95342 0.95341 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.07 37.16 0.26 -0.85 16 2 C -0.04 -0.35 0.88 -154.51 -0.14 -0.49 16 3 C -0.14 -1.06 8.46 37.16 0.31 -0.74 16 4 C -0.14 -1.29 8.31 37.16 0.31 -0.98 16 5 C -0.11 -1.22 4.66 -90.62 -0.42 -1.64 16 6 H 0.12 1.49 7.64 -51.92 -0.40 1.09 16 7 C -0.15 -1.62 9.27 -26.72 -0.25 -1.86 16 8 C -0.16 -2.14 5.15 -91.77 -0.47 -2.62 16 9 H 0.13 1.57 7.07 -51.93 -0.37 1.21 16 10 C 0.48 8.89 7.74 36.01 0.28 9.17 16 11 O -0.52 -10.70 16.01 -18.75 -0.30 -11.00 16 12 O -0.35 -7.41 10.22 -39.25 -0.40 -7.81 16 13 C 0.07 1.73 5.40 37.16 0.20 1.93 16 14 C 0.02 0.64 5.35 -27.88 -0.15 0.50 16 15 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.06 0.46 7.08 -51.93 -0.37 0.10 16 24 H 0.06 0.42 6.98 -51.93 -0.36 0.06 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.56 7.29 -51.93 -0.38 0.19 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.11 0.97 5.85 -51.93 -0.30 0.66 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 35 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -31.22 314.73 -7.08 -38.30 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -6.37 Total: -3.63 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -0.47 Total: -11.31 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.70 Total: -18.80 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.22 -7.08 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869649369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.739 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds