Wall clock time and date at job start Sun Mar 29 2020 22:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 O 1.45202 * 109.47243 * 240.00758 * 2 1 3 13 13 C 1.34218 * 117.00377 * 89.99417 * 12 2 1 14 14 O 1.20826 * 119.99938 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00192 * 179.97438 * 13 12 2 16 16 H 1.09001 * 115.54846 * 34.28143 * 15 13 12 17 17 C 1.53001 * 117.50063 * 248.61562 * 15 13 12 18 18 C 1.52999 * 117.50055 * 179.97438 * 15 13 12 19 19 H 1.09000 * 117.50319 * 0.02562 * 18 15 13 20 20 C 1.53002 * 117.50060 * 214.97832 * 18 15 13 21 21 C 1.52999 * 109.46640 * 60.00203 * 20 18 15 22 22 C 1.52999 * 109.47390 * 180.02562 * 20 18 15 23 23 C 1.52995 * 109.47233 * 300.00414 * 20 18 15 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 27 27 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 28 28 H 1.08992 * 117.49898 * 359.97438 * 17 15 13 29 29 H 1.09002 * 117.50043 * 145.02451 * 17 15 13 30 30 H 1.08992 * 109.47422 * 60.00367 * 21 20 18 31 31 H 1.09011 * 109.47213 * 180.02562 * 21 20 18 32 32 H 1.09003 * 109.47581 * 299.99853 * 21 20 18 33 33 H 1.08992 * 109.46918 * 59.99975 * 22 20 18 34 34 H 1.08998 * 109.47224 * 180.02562 * 22 20 18 35 35 H 1.09007 * 109.46726 * 300.00065 * 22 20 18 36 36 H 1.09001 * 109.47486 * 59.99665 * 23 20 18 37 37 H 1.09000 * 109.47493 * 179.97438 * 23 20 18 38 38 H 1.09001 * 109.47217 * 299.99422 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 8 2.0141 -0.6843 -1.1857 13 6 2.2171 0.0642 -2.2811 14 8 1.9981 1.2520 -2.2503 15 6 2.7193 -0.5767 -3.5492 16 1 2.3683 -1.5920 -3.7338 17 6 4.1373 -0.2259 -4.0045 18 6 2.9301 0.3299 -4.7635 19 1 2.7060 1.3900 -4.6451 20 6 2.6321 -0.2580 -6.1443 21 6 1.1650 -0.6871 -6.2099 22 6 2.9037 0.7980 -7.2176 23 6 3.5301 -1.4729 -6.3860 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7094 1.1615 3.4845 28 1 4.7067 0.4688 -3.3872 29 1 4.7188 -1.0102 -4.4892 30 1 0.5252 0.1784 -6.0378 31 1 0.9527 -1.1063 -7.1935 32 1 0.9719 -1.4396 -5.4453 33 1 3.9489 1.1033 -7.1706 34 1 2.6909 0.3793 -8.2012 35 1 2.2641 1.6638 -7.0455 36 1 3.3371 -2.2253 -5.6214 37 1 3.3175 -1.8920 -7.3695 38 1 4.5753 -1.1672 -6.3393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205947.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:12 Heat of formation + Delta-G solvation = -86.456498 kcal Electronic energy + Delta-G solvation = -17542.441065 eV Core-core repulsion = 14771.178021 eV Total energy + Delta-G solvation = -2771.263044 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03204 -38.43052 -35.65803 -33.78058 -33.20848 -29.58954 -27.51407 -27.35674 -25.34527 -24.73455 -22.86465 -21.13316 -19.38304 -18.38242 -17.17226 -16.53873 -15.74678 -15.42541 -14.69695 -14.60399 -14.22120 -13.87378 -13.29861 -12.72857 -12.62025 -12.45891 -12.17304 -11.86597 -11.75286 -11.58409 -11.30275 -11.20093 -11.04752 -11.03582 -10.84957 -10.63215 -10.34710 -10.27588 -10.16238 -9.92603 -9.56081 -9.48353 -8.88051 -8.47592 -6.16901 -4.23661 2.86756 3.25597 3.30638 3.34674 3.59470 3.98259 4.33698 4.65184 4.69339 4.85361 5.02752 5.11751 5.16077 5.25060 5.45203 5.55474 5.56549 5.63203 5.71913 5.80079 5.84186 5.87624 5.97683 6.07791 6.14458 6.19753 6.29622 6.39356 6.66842 6.91075 6.94066 7.20869 7.62090 7.75103 7.96715 8.16656 8.68588 8.93006 9.41823 10.90637 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.047972 B = 0.004845 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.530697 B = 5777.578163 C = 5968.151307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.353 6.353 13 C 0.481 3.519 14 O -0.523 6.523 15 C -0.158 4.158 16 H 0.128 0.872 17 C -0.152 4.152 18 C -0.112 4.112 19 H 0.117 0.883 20 C -0.039 4.039 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.147 4.147 24 H 0.036 0.964 25 H 0.099 0.901 26 H 0.015 0.985 27 H 0.266 0.734 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 -3.331 -16.521 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.269 6.269 13 C 0.324 3.676 14 O -0.414 6.414 15 C -0.177 4.177 16 H 0.146 0.854 17 C -0.189 4.189 18 C -0.131 4.131 19 H 0.135 0.865 20 C -0.039 4.039 21 C -0.199 4.199 22 C -0.195 4.195 23 C -0.205 4.205 24 H 0.056 0.944 25 H 0.117 0.883 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.582 -2.873 -16.301 16.935 hybrid contribution 0.120 -0.296 1.025 1.074 sum 3.702 -3.168 -15.276 16.034 Atomic orbital electron populations 1.22155 0.97579 1.00085 1.01378 1.20636 0.91399 0.93895 0.77859 0.93661 1.21036 1.32412 1.13467 0.88916 0.91318 1.24892 0.94926 0.95124 0.99064 1.69910 1.36106 1.22613 1.24130 0.86268 0.78532 0.79912 0.81392 1.20405 1.20941 1.19579 1.86468 1.75603 1.43628 1.21195 1.22318 0.74573 0.85396 0.85311 1.90579 1.49113 1.16977 1.84727 1.21802 1.02315 1.01428 0.92191 0.85444 1.23238 0.89732 1.03597 1.02332 1.22528 1.01201 0.99272 0.90056 0.86479 1.20091 0.95873 0.95318 0.92657 1.21871 0.94953 1.01660 1.01453 1.21828 1.01779 0.98324 0.97548 1.22041 0.99539 0.97328 1.01544 0.94442 0.88255 0.96541 0.92426 0.88284 0.87131 0.92370 0.92718 0.92343 0.92478 0.92649 0.92452 0.92280 0.92632 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.33 37.16 0.35 -3.68 16 2 C 0.21 5.95 2.56 -27.88 -0.07 5.88 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.94 8.90 -34.44 -0.31 -15.25 16 5 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 O -0.35 -8.78 9.86 -39.23 -0.39 -9.16 16 13 C 0.48 10.50 7.71 36.00 0.28 10.78 16 14 O -0.52 -12.79 15.48 -18.75 -0.29 -13.08 16 15 C -0.16 -2.50 5.15 -91.77 -0.47 -2.98 16 16 H 0.13 1.80 7.07 -51.93 -0.37 1.44 16 17 C -0.15 -1.99 9.27 -26.71 -0.25 -2.23 16 18 C -0.11 -1.49 4.66 -90.60 -0.42 -1.91 16 19 H 0.12 1.75 7.64 -51.93 -0.40 1.36 16 20 C -0.04 -0.41 0.88 -154.51 -0.14 -0.54 16 21 C -0.14 -1.49 8.31 37.16 0.31 -1.18 16 22 C -0.14 -1.24 8.46 37.16 0.31 -0.93 16 23 C -0.15 -1.31 7.07 37.16 0.26 -1.05 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.11 1.15 5.85 -51.93 -0.30 0.85 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.06 0.54 7.07 -51.93 -0.37 0.17 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -30.88 309.64 -6.86 -37.74 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.21 Total: 0.02 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -0.24 Total: -11.46 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.63 Total: -25.04 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.68 Total: -22.24 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.88 -6.86 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205947.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.716 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds