Wall clock time and date at job start Sun Mar 29 2020 22:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99539 * 2 1 4 4 H 1.48502 * 109.46873 * 92.34608 * 3 2 1 5 5 H 1.48496 * 109.47027 * 212.34165 * 3 2 1 6 6 H 1.48494 * 109.47493 * 332.34783 * 3 2 1 7 7 C 1.38810 * 120.00327 * 179.72333 * 2 1 3 8 8 H 1.07996 * 119.99731 * 24.33883 * 7 2 1 9 9 N 1.37526 * 120.00223 * 204.33234 * 7 2 1 10 10 C 1.46263 * 119.41081 * 203.10421 * 9 7 2 11 11 C 1.52975 * 109.97129 * 305.90509 * 10 9 7 12 12 C 1.52956 * 109.56138 * 221.64894 * 11 10 9 13 13 C 1.52998 * 109.61866 * 124.94746 * 12 11 10 14 14 C 1.53031 * 109.51759 * 224.46011 * 13 12 11 15 15 C 1.52987 * 109.51404 * 99.72577 * 14 13 12 16 16 N 1.46769 * 109.27943 * 284.64015 * 15 14 13 17 17 C 1.35502 * 118.84867 * 107.26039 * 16 15 14 18 18 O 1.21242 * 120.42398 * 1.30179 * 17 16 15 19 19 C 1.50530 * 119.47350 * 181.55167 * 17 16 15 20 20 C 1.46216 * 119.04897 * 22.58722 * 9 7 2 21 21 H 0.97001 * 119.99861 * 174.50937 * 1 2 3 22 22 H 1.09348 * 109.21103 * 65.42028 * 10 9 7 23 23 H 1.08722 * 110.41524 * 184.84620 * 10 9 7 24 24 H 1.08690 * 109.90911 * 342.02397 * 11 10 9 25 25 H 1.09076 * 109.36319 * 101.86837 * 11 10 9 26 26 H 1.09014 * 109.32843 * 244.59962 * 12 11 10 27 27 H 1.08824 * 109.65216 * 4.52991 * 12 11 10 28 28 H 1.08768 * 109.69912 * 344.67648 * 13 12 11 29 29 H 1.08951 * 109.54894 * 104.50631 * 13 12 11 30 30 H 1.08846 * 109.54372 * 219.84585 * 14 13 12 31 31 H 1.08857 * 109.36185 * 339.76776 * 14 13 12 32 32 H 1.08948 * 109.58165 * 45.18438 * 15 14 13 33 33 H 1.09205 * 109.26363 * 164.84967 * 15 14 13 34 34 H 0.97250 * 120.62650 * 286.79586 * 16 15 14 35 35 H 1.09562 * 108.68781 * 273.82203 * 19 17 16 36 36 H 1.08947 * 109.86411 * 32.52732 * 19 17 16 37 37 H 1.09465 * 109.10021 * 276.94173 * 20 9 7 38 38 H 1.09405 * 109.15901 * 35.48494 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5472 2.0178 1.3989 5 1 3.5220 1.4552 -0.7490 6 1 1.4236 2.6665 -0.6497 7 6 2.0103 -1.2021 0.0058 8 1 1.5423 -2.0976 -0.3753 9 7 3.2940 -1.2526 0.4968 10 6 4.1879 -2.3252 0.0612 11 6 3.5296 -3.6847 0.3036 12 6 4.5661 -4.6642 0.8566 13 6 4.0629 -5.2542 2.1755 14 6 5.1986 -5.2558 3.2012 15 6 5.0402 -4.0588 4.1407 16 7 5.4482 -2.8354 3.4400 17 6 4.4939 -1.9556 3.0510 18 8 3.3262 -2.1665 3.3001 19 6 4.8934 -0.7135 2.3004 20 6 3.7360 -0.2225 1.4356 21 1 -0.4850 -0.8362 -0.0804 22 1 4.3895 -2.2137 -1.0077 23 1 5.1308 -2.2754 0.6002 24 1 2.7141 -3.5795 1.0144 25 1 3.1367 -4.0693 -0.6384 26 1 4.7196 -5.4703 0.1390 27 1 5.5077 -4.1449 1.0238 28 1 3.2346 -4.6580 2.5515 29 1 3.7228 -6.2762 2.0114 30 1 5.1664 -6.1779 3.7786 31 1 6.1532 -5.1863 2.6828 32 1 4.0007 -3.9774 4.4564 33 1 5.6728 -4.2040 5.0190 34 1 6.3874 -2.6554 3.2635 35 1 5.1563 0.0652 3.0249 36 1 5.7650 -0.9199 1.6803 37 1 4.0549 0.6612 0.8738 38 1 2.8987 0.0578 2.0815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879253824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:23 Heat of formation + Delta-G solvation = -19.108697 kcal Electronic energy + Delta-G solvation = -18993.552692 eV Core-core repulsion = 16257.502818 eV Total energy + Delta-G solvation = -2736.049873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.57384 -36.42558 -36.16858 -33.68599 -32.00259 -30.94325 -29.99896 -26.55553 -24.77802 -23.36558 -21.15542 -20.75928 -20.26270 -19.68651 -17.21500 -16.60367 -16.02243 -15.70095 -14.79379 -14.18342 -14.15172 -13.90012 -13.48584 -13.32782 -12.98345 -12.79704 -11.94056 -11.87108 -11.77517 -11.59410 -11.13321 -10.99965 -10.84454 -10.61644 -10.43692 -10.27343 -9.91893 -9.72291 -9.55597 -9.26717 -8.97158 -8.68405 -8.21502 -6.85937 -6.10513 -3.09869 3.17267 3.49766 3.54810 3.60758 3.78351 4.71881 4.83659 5.03998 5.09691 5.12560 5.27034 5.44813 5.51944 5.58181 5.62730 5.70552 5.82855 5.84944 5.95721 5.97104 6.13310 6.15033 6.32337 6.39973 6.45863 6.56867 6.64964 6.70918 6.74880 6.85134 6.95484 7.29191 7.82408 8.21749 8.61709 8.74306 9.24124 9.81414 10.31638 11.31275 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.009181 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.517743 B = 3048.926842 C = 3409.960961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.070 2.930 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.303 1.303 7 C -0.333 4.333 8 H 0.067 0.933 9 N -0.600 5.600 10 C 0.154 3.846 11 C -0.135 4.135 12 C -0.112 4.112 13 C -0.123 4.123 14 C -0.135 4.135 15 C 0.111 3.889 16 N -0.744 5.744 17 C 0.521 3.479 18 O -0.506 6.506 19 C -0.153 4.153 20 C 0.146 3.854 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.396 0.604 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.020 0.980 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.308 -7.396 6.530 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.220 4.220 3 Si 0.904 3.096 4 H -0.223 1.223 5 H -0.220 1.220 6 H -0.231 1.231 7 C -0.461 4.461 8 H 0.085 0.915 9 N -0.324 5.324 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.150 4.150 13 C -0.161 4.161 14 C -0.173 4.173 15 C -0.013 4.013 16 N -0.399 5.399 17 C 0.308 3.692 18 O -0.378 6.378 19 C -0.194 4.194 20 C 0.020 3.980 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.230 0.770 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.037 0.963 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.234 -5.910 6.775 16.835 hybrid contribution 0.797 -1.716 -0.257 1.909 sum 15.031 -7.626 6.518 18.071 Atomic orbital electron populations 1.70887 1.06048 1.29968 1.49507 1.25991 0.96538 1.00918 0.98535 0.83747 0.73930 0.76046 0.75878 1.22343 1.22043 1.23147 1.20208 0.89127 0.95652 1.41163 0.91520 1.44118 1.11683 1.28487 1.48139 1.20837 0.91801 0.88083 0.96546 1.22211 0.98770 0.95664 1.00785 1.21790 0.98842 0.98319 0.96052 1.21842 0.98394 1.00562 0.95291 1.22089 0.99327 0.97780 0.98135 1.21516 1.02424 0.83802 0.93602 1.46272 1.09511 1.22066 1.62098 1.20660 0.85751 0.84393 0.78390 1.90728 1.17722 1.75717 1.53620 1.22031 1.01462 0.96300 0.99657 1.20966 0.94747 0.91365 0.90880 0.92853 0.96475 0.93865 0.90157 0.93700 0.93507 0.92404 0.90523 0.93097 0.91832 0.91855 0.89179 0.92163 0.77020 0.89076 0.90170 0.96344 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.95 13.70 55.49 0.76 -29.19 16 2 C -0.02 -0.59 5.18 -17.43 -0.09 -0.68 16 3 Si 1.07 27.55 24.29 -169.99 -4.13 23.43 16 4 H -0.30 -7.15 6.63 56.52 0.37 -6.78 16 5 H -0.29 -7.13 6.77 56.52 0.38 -6.75 16 6 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 7 C -0.33 -9.74 9.25 -14.78 -0.14 -9.88 16 8 H 0.07 2.09 7.48 -52.49 -0.39 1.70 16 9 N -0.60 -14.82 2.52 -173.33 -0.44 -15.26 16 10 C 0.15 3.18 5.29 -4.18 -0.02 3.16 16 11 C -0.13 -2.66 5.08 -26.77 -0.14 -2.79 16 12 C -0.11 -1.70 5.81 -26.75 -0.16 -1.86 16 13 C -0.12 -1.77 5.78 -26.72 -0.15 -1.92 16 14 C -0.13 -1.50 5.75 -26.72 -0.15 -1.65 16 15 C 0.11 1.31 6.27 -3.90 -0.02 1.29 16 16 N -0.74 -9.35 5.34 -59.94 -0.32 -9.67 16 17 C 0.52 9.01 6.06 -10.74 -0.07 8.94 16 18 O -0.51 -11.29 14.94 5.59 0.08 -11.20 16 19 C -0.15 -2.55 5.26 -28.18 -0.15 -2.69 16 20 C 0.15 3.29 3.55 -4.41 -0.02 3.27 16 21 H 0.26 8.46 8.73 -40.82 -0.36 8.11 16 22 H 0.02 0.37 8.17 -51.73 -0.42 -0.05 16 23 H 0.04 0.76 4.32 -52.09 -0.22 0.54 16 24 H 0.08 1.89 6.46 -52.10 -0.34 1.55 16 25 H 0.04 0.89 8.15 -51.89 -0.42 0.47 16 26 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.06 0.82 6.19 -52.03 -0.32 0.49 16 28 H 0.08 1.37 5.89 -52.06 -0.31 1.06 16 29 H 0.05 0.67 8.14 -51.96 -0.42 0.25 16 30 H 0.06 0.60 8.13 -52.02 -0.42 0.18 16 31 H 0.06 0.65 7.34 -52.01 -0.38 0.26 16 32 H 0.09 1.33 6.57 -51.96 -0.34 0.98 16 33 H 0.06 0.55 8.16 -51.81 -0.42 0.13 16 34 H 0.40 3.69 8.86 -40.72 -0.36 3.33 16 35 H 0.09 1.26 8.19 -51.61 -0.42 0.84 16 36 H 0.08 1.11 6.93 -51.96 -0.36 0.75 16 37 H 0.02 0.43 4.58 -51.67 -0.24 0.20 16 38 H 0.07 1.76 6.52 -51.70 -0.34 1.42 16 LS Contribution 281.54 15.07 4.24 4.24 Total: -1.00 -34.41 281.54 -6.66 -41.07 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.76 Total: 1.40 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.10 Total: -4.81 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.00 Total: -54.12 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 27.55 SS G_CDS: -4.13 Total: 23.43 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.41 -6.66 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879253824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.959 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds