Wall clock time and date at job start Sun Mar 29 2020 22:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99638 * 2 1 4 4 H 1.48500 * 109.47058 * 269.99893 * 3 2 1 5 5 H 1.48496 * 109.47176 * 30.00090 * 3 2 1 6 6 H 1.48501 * 109.46609 * 150.00038 * 3 2 1 7 7 C 1.37870 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00165 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99841 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46935 * 179.97438 * 9 7 2 11 11 C 1.47585 * 111.00397 * 293.95547 * 10 9 7 12 12 C 1.52149 * 107.42212 * 177.40062 * 11 10 9 13 13 H 1.09001 * 110.22608 * 302.50321 * 12 11 10 14 14 C 1.53135 * 114.44746 * 176.90392 * 12 11 10 15 15 C 1.55067 * 104.08917 * 215.17991 * 14 12 11 16 16 C 1.55279 * 104.91272 * 2.79581 * 15 14 12 17 17 N 1.46948 * 103.39827 * 24.07505 * 16 15 14 18 18 C 1.45636 * 117.16056 * 197.49395 * 17 16 15 19 19 C 1.46597 * 110.99809 * 167.79909 * 10 9 7 20 20 H 1.08996 * 109.16863 * 300.27474 * 19 10 9 21 21 C 1.52999 * 109.16392 * 59.47952 * 19 10 9 22 22 O 1.42899 * 109.47765 * 66.53904 * 21 19 10 23 23 H 0.97002 * 119.99953 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47245 * 60.00495 * 9 7 2 25 25 H 1.08998 * 109.47274 * 299.99890 * 9 7 2 26 26 H 1.08997 * 109.87264 * 57.92008 * 11 10 9 27 27 H 1.09007 * 109.93027 * 296.91159 * 11 10 9 28 28 H 1.09005 * 110.50354 * 333.82781 * 14 12 11 29 29 H 1.08995 * 110.50997 * 96.52522 * 14 12 11 30 30 H 1.09003 * 110.34974 * 121.64872 * 15 14 12 31 31 H 1.08999 * 110.35159 * 243.82628 * 15 14 12 32 32 H 1.09003 * 110.63049 * 265.59878 * 16 15 14 33 33 H 1.08997 * 110.63472 * 142.55582 * 16 15 14 34 34 H 1.08995 * 109.85229 * 300.03894 * 18 17 16 35 35 H 1.09001 * 109.84953 * 61.03924 * 18 17 16 36 36 H 1.09001 * 109.46990 * 186.54075 * 21 19 10 37 37 H 1.08998 * 109.46875 * 306.53366 * 21 19 10 38 38 H 0.96697 * 114.00446 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 7 4.0012 -2.5789 -0.0010 11 6 3.6506 -3.2639 1.2584 12 6 4.1358 -4.7015 1.1454 13 1 3.6876 -5.1832 0.2764 14 6 3.9183 -5.5446 2.4052 15 6 5.1534 -6.4811 2.4505 16 6 6.0270 -6.0491 1.2416 17 7 5.6171 -4.6579 1.0052 18 6 5.9513 -4.0769 -0.2878 19 6 5.4374 -2.6283 -0.2908 20 1 5.6204 -2.1858 -1.2699 21 6 6.1919 -1.8256 0.7709 22 8 6.0676 -2.4757 2.0374 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6804 0.8889 25 1 3.8745 -0.6799 -0.8911 26 1 2.5701 -3.2477 1.4006 27 1 4.1419 -2.7721 2.0981 28 1 3.8887 -4.9085 3.2899 29 1 3.0006 -6.1267 2.3214 30 1 5.7008 -6.3416 3.3827 31 1 4.8447 -7.5211 2.3448 32 1 5.8096 -6.6670 0.3703 33 1 7.0859 -6.0998 1.4952 34 1 7.0320 -4.0865 -0.4297 35 1 5.4676 -4.6428 -1.0840 36 1 7.2451 -1.7613 0.4974 37 1 5.7712 -0.8221 0.8347 38 1 6.5223 -2.0207 2.7594 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880070939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:32 Heat of formation + Delta-G solvation = -38.549199 kcal Electronic energy + Delta-G solvation = -18803.594034 eV Core-core repulsion = 16066.701157 eV Total energy + Delta-G solvation = -2736.892877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18612 -38.25392 -36.39386 -34.73343 -33.56458 -31.40474 -30.42080 -28.30241 -26.18688 -25.24116 -23.22200 -22.14188 -21.38526 -20.02686 -19.01056 -18.22720 -16.81076 -16.59887 -16.32076 -16.27383 -15.72195 -15.21515 -15.10986 -14.59405 -14.30115 -13.91612 -13.68257 -13.38703 -13.21216 -12.83848 -12.74185 -12.46946 -12.25626 -12.07795 -11.94064 -11.78357 -11.75209 -11.44687 -11.33222 -11.20634 -10.79876 -10.50322 -9.09100 -8.77283 -8.28340 -6.31387 1.32733 1.34833 1.45407 2.33677 3.04050 3.08646 3.20052 3.66536 3.75685 3.91048 4.07303 4.17314 4.30032 4.40050 4.48213 4.55473 4.58880 4.61524 4.78094 4.80342 4.83979 4.87461 4.96462 4.99432 5.06477 5.12153 5.17264 5.34773 5.37393 5.45910 5.55129 5.99711 6.10618 6.38921 6.53151 6.72827 6.76355 7.12336 7.32028 8.88668 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.007749 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.252319 B = 3612.302785 C = 4020.447187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.515 4.515 8 H 0.032 0.968 9 C 0.182 3.818 10 N -0.549 5.549 11 C 0.088 3.912 12 C 0.072 3.928 13 H 0.025 0.975 14 C -0.111 4.111 15 C -0.107 4.107 16 C 0.041 3.959 17 N -0.497 5.497 18 C 0.075 3.925 19 C 0.078 3.922 20 H 0.093 0.907 21 C 0.058 3.942 22 O -0.536 6.536 23 H 0.267 0.733 24 H -0.011 1.011 25 H 0.024 0.976 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.691 -8.564 3.999 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.554 4.554 8 H 0.050 0.950 9 C 0.055 3.945 10 N -0.273 5.273 11 C -0.040 4.040 12 C -0.037 4.037 13 H 0.043 0.957 14 C -0.150 4.150 15 C -0.145 4.145 16 C -0.087 4.087 17 N -0.222 5.222 18 C -0.054 4.054 19 C -0.031 4.031 20 H 0.111 0.889 21 C -0.022 4.022 22 O -0.340 6.340 23 H 0.075 0.925 24 H 0.007 0.993 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 16.249 -8.800 3.607 18.828 hybrid contribution -0.171 1.306 -0.034 1.318 sum 16.078 -7.493 3.574 18.095 Atomic orbital electron populations 1.70062 1.08161 1.28074 1.52752 1.25867 0.95626 1.03175 0.94374 0.85678 0.79267 0.78467 0.79275 1.18867 1.20676 1.17576 1.21284 0.91334 0.93054 1.49710 0.94996 1.19799 0.93795 0.86416 0.94531 1.61554 1.13307 1.17047 1.35436 1.21858 0.97732 0.93320 0.91069 1.22275 0.89409 0.94814 0.97170 0.95653 1.22048 0.98731 0.97481 0.96739 1.22487 0.94901 0.98651 0.98460 1.22900 1.00558 0.87936 0.97267 1.63941 1.08896 1.19539 1.29812 1.21939 1.00531 0.93156 0.89774 1.22102 0.86907 0.96437 0.97628 0.88923 1.22696 0.99067 0.94390 0.86083 1.86962 1.77162 1.52604 1.17259 0.92455 0.99323 0.95835 0.94733 0.91919 0.91506 0.91348 0.90281 0.90153 0.94934 0.89198 0.88542 0.95780 0.91994 0.95982 0.78593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.69 13.96 21.45 0.30 -60.40 16 2 C 0.01 0.39 5.47 84.65 0.46 0.85 16 3 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 7 C -0.52 -30.93 9.05 25.60 0.23 -30.70 16 8 H 0.03 2.15 7.38 -2.91 -0.02 2.13 16 9 C 0.18 8.99 3.01 85.56 0.26 9.25 16 10 N -0.55 -24.03 4.54 -874.74 -3.97 -28.00 16 11 C 0.09 3.71 4.56 85.89 0.39 4.10 16 12 C 0.07 2.48 2.62 44.30 0.12 2.60 16 13 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 14 C -0.11 -3.10 6.66 31.35 0.21 -2.89 16 15 C -0.11 -2.29 7.06 32.08 0.23 -2.06 16 16 C 0.04 0.95 6.74 87.08 0.59 1.53 16 17 N -0.50 -14.55 2.88 -864.34 -2.49 -17.04 16 18 C 0.07 2.18 5.44 86.78 0.47 2.65 16 19 C 0.08 2.66 2.92 45.21 0.13 2.79 16 20 H 0.09 2.97 8.09 -2.39 -0.02 2.95 16 21 C 0.06 1.71 6.36 71.98 0.46 2.17 16 22 O -0.54 -15.72 8.46 -148.98 -1.26 -16.98 16 23 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 24 H -0.01 -0.54 5.87 -2.39 -0.01 -0.55 16 25 H 0.02 1.14 7.44 -2.39 -0.02 1.12 16 26 H 0.03 1.71 6.86 -2.39 -0.02 1.69 16 27 H 0.06 2.68 5.55 -2.38 -0.01 2.67 16 28 H 0.07 1.93 8.02 -2.38 -0.02 1.91 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.02 0.75 8.02 -2.39 -0.02 0.73 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.02 0.74 6.30 -2.39 -0.02 0.73 16 38 H 0.37 7.84 9.12 -74.06 -0.68 7.16 16 Total: -1.00 -70.14 283.88 -1.69 -71.83 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.31 Total: 13.60 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 3.54 Total: -9.71 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -6.16 Total: -105.44 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -1.26 Total: -16.98 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -70.14 -1.69 -71.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880070939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.285 kcal (2) G-P(sol) polarization free energy of solvation -70.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds