Wall clock time and date at job start Sun Mar 29 2020 22:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 115.55695 * 2 1 4 4 C 1.53071 * 117.51675 * 214.29845 * 2 1 3 5 5 C 1.52991 * 117.50176 * 145.68750 * 2 1 3 6 6 C 1.53002 * 117.50150 * 215.00485 * 5 2 1 7 7 C 1.53002 * 117.49634 * 0.02562 * 5 2 1 8 8 N 1.46497 * 109.47165 * 279.53037 * 7 5 2 9 9 C 1.34780 * 120.00141 * 175.13780 * 8 7 5 10 10 O 1.21593 * 119.99661 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00127 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99835 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.46972 * 179.97438 * 12 11 9 14 14 H 1.08004 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00043 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99835 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99757 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46931 * 90.00237 * 17 15 13 19 19 H 1.48497 * 109.46869 * 209.99869 * 17 15 13 20 20 H 1.48497 * 109.47082 * 330.00296 * 17 15 13 21 21 H 1.08997 * 109.47557 * 274.30999 * 1 2 3 22 22 H 1.09001 * 109.47318 * 34.31611 * 1 2 3 23 23 H 1.09007 * 109.46945 * 154.30964 * 1 2 3 24 24 H 1.09002 * 109.46855 * 205.68356 * 3 2 1 25 25 H 1.08997 * 109.46883 * 325.68470 * 3 2 1 26 26 H 1.09001 * 109.46700 * 85.68756 * 3 2 1 27 27 H 1.08998 * 117.49245 * 145.03587 * 4 2 1 28 28 H 1.08997 * 117.53306 * 359.97438 * 4 2 1 29 29 H 1.09000 * 109.46947 * 199.88949 * 6 5 2 30 30 H 1.08998 * 109.47040 * 319.89395 * 6 5 2 31 31 H 1.09000 * 109.46873 * 79.89075 * 6 5 2 32 32 H 1.09004 * 109.46997 * 159.53228 * 7 5 2 33 33 H 1.08997 * 109.47233 * 39.53349 * 7 5 2 34 34 H 0.97007 * 120.00272 * 355.14196 * 8 7 5 35 35 H 0.97000 * 119.99901 * 359.97438 * 11 9 8 36 36 H 1.08994 * 109.47654 * 299.99478 * 12 11 9 37 37 H 1.09004 * 109.47041 * 60.00090 * 12 11 9 38 38 H 0.97008 * 119.99574 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3804 0.0000 4 6 2.2372 -1.1215 -0.7650 5 6 2.2365 -1.1209 0.7650 6 6 3.5487 -0.7757 1.4719 7 6 1.3588 -2.1564 1.4709 8 7 0.8909 -1.6110 2.7475 9 6 0.0194 -2.3111 3.5006 10 8 -0.3779 -3.3956 3.1205 11 7 -0.4115 -1.8091 4.6748 12 6 -1.3582 -2.5703 5.4935 13 6 -1.6768 -1.7943 6.7455 14 1 -1.2201 -0.8302 6.9141 15 6 -2.5522 -2.3145 7.6751 16 7 -2.8306 -1.6371 8.7673 17 14 -3.3427 -3.9817 7.3829 18 1 -2.4841 -5.0451 7.9634 19 1 -4.6789 -4.0161 8.0300 20 1 -3.4935 -4.2090 5.9232 21 1 -0.3634 0.0772 1.0247 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3633 -0.9261 -0.4455 24 1 3.1824 1.3086 -0.4454 25 1 1.5811 2.0743 -0.5793 26 1 2.2771 1.7415 1.0248 27 1 3.1724 -0.8755 -1.2679 28 1 1.6128 -1.8598 -1.2681 29 1 4.1098 -1.6903 1.6633 30 1 4.1389 -0.1130 0.8390 31 1 3.3322 -0.2777 2.4170 32 1 1.9393 -3.0609 1.6532 33 1 0.5015 -2.3955 0.8418 34 1 1.2081 -0.7459 3.0509 35 1 -0.0942 -0.9441 4.9781 36 1 -2.2742 -2.7393 4.9275 37 1 -0.9158 -3.5293 5.7636 38 1 -3.4468 -2.0030 9.4211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883656151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:51 Heat of formation + Delta-G solvation = -23.924159 kcal Electronic energy + Delta-G solvation = -17328.780594 eV Core-core repulsion = 14592.521907 eV Total energy + Delta-G solvation = -2736.258688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.92659 -38.71730 -34.39594 -33.81603 -32.27568 -30.73493 -28.61523 -27.95181 -27.01200 -25.50899 -21.98480 -20.84161 -20.17031 -18.49598 -17.70459 -16.29451 -15.87076 -15.49315 -14.82030 -14.57698 -14.36851 -13.99490 -13.54729 -13.27720 -13.05231 -12.87244 -12.62030 -12.34549 -12.30276 -12.20018 -12.13150 -11.90869 -11.56809 -10.96734 -10.88590 -10.71930 -10.05473 -9.92999 -9.59558 -9.48099 -9.40239 -8.77337 -8.68431 -7.94294 -6.17743 -4.19248 3.14916 3.30570 3.37225 3.46551 3.66558 3.88624 4.37471 4.41391 4.46968 4.61407 4.84592 4.90750 5.07992 5.18092 5.31867 5.48455 5.53279 5.58844 5.64015 5.71550 5.72831 5.77928 5.79005 5.86436 5.98112 6.05599 6.12678 6.26061 6.79608 6.86329 7.16369 7.30204 7.46532 7.64960 8.32803 8.74330 8.86898 9.27892 9.44825 10.94296 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041533 B = 0.004611 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.995086 B = 6071.505832 C = 6225.212158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.159 4.159 5 C -0.137 4.137 6 C -0.113 4.113 7 C 0.180 3.820 8 N -0.749 5.749 9 C 0.694 3.306 10 O -0.606 6.606 11 N -0.724 5.724 12 C 0.239 3.761 13 C -0.541 4.541 14 H 0.079 0.921 15 C 0.077 3.923 16 N -0.894 5.894 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.260 1.260 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.392 0.608 35 H 0.392 0.608 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.421 5.009 -17.610 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.117 4.117 3 C -0.171 4.171 4 C -0.196 4.196 5 C -0.138 4.138 6 C -0.170 4.170 7 C 0.055 3.945 8 N -0.406 5.406 9 C 0.394 3.606 10 O -0.486 6.486 11 N -0.376 5.376 12 C 0.116 3.884 13 C -0.579 4.579 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.532 5.532 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.184 1.184 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.226 0.774 35 H 0.225 0.775 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.906 3.975 -17.751 21.210 hybrid contribution -0.132 -0.054 0.301 0.333 sum 10.775 3.921 -17.450 20.880 Atomic orbital electron populations 1.21373 0.91732 1.01723 1.02525 1.21658 0.94972 0.91106 1.03918 1.21350 0.99684 0.94042 1.01975 1.23321 1.02379 1.01292 0.92621 1.21860 0.98096 1.00120 0.93684 1.21288 0.94247 1.01480 0.99999 1.20495 0.96201 0.94052 0.83703 1.45042 1.49741 1.23467 1.22384 1.16122 0.79459 0.84034 0.80985 1.90859 1.62561 1.21717 1.73459 1.45380 1.48905 1.23546 1.19762 1.19341 0.87442 0.91901 0.89741 1.21107 1.28043 1.06393 1.02370 0.90333 1.24780 0.95682 0.97618 0.94542 1.69885 1.35252 1.38383 1.09645 0.86812 0.79010 0.84241 0.79605 1.19868 1.20964 1.18440 0.91643 0.92366 0.92418 0.92568 0.92228 0.92068 0.88640 0.88623 0.92037 0.92311 0.92094 0.91993 0.91606 0.77422 0.77541 0.95973 0.96435 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 8.72 37.16 0.32 -0.87 16 2 C -0.12 -1.07 2.70 -154.47 -0.42 -1.48 16 3 C -0.11 -0.88 8.72 37.16 0.32 -0.56 16 4 C -0.16 -1.37 9.20 -26.70 -0.25 -1.62 16 5 C -0.14 -1.34 2.15 -154.51 -0.33 -1.67 16 6 C -0.11 -0.97 8.98 37.16 0.33 -0.64 16 7 C 0.18 2.36 4.92 -4.04 -0.02 2.34 16 8 N -0.75 -11.06 5.36 -65.22 -0.35 -11.41 16 9 C 0.69 14.02 8.57 -86.92 -0.74 13.28 16 10 O -0.61 -14.73 16.34 5.28 0.09 -14.65 16 11 N -0.72 -15.25 5.55 -66.41 -0.37 -15.62 16 12 C 0.24 6.05 4.50 -5.19 -0.02 6.03 16 13 C -0.54 -15.09 9.83 -34.44 -0.34 -15.43 16 14 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 15 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 16 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 17 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 21 H 0.06 0.77 8.01 -51.93 -0.42 0.35 16 22 H 0.06 0.53 7.92 -51.93 -0.41 0.11 16 23 H 0.06 0.61 7.27 -51.92 -0.38 0.24 16 24 H 0.06 0.39 7.28 -51.93 -0.38 0.01 16 25 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 28 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.43 6.96 -51.93 -0.36 0.07 16 31 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.94 6.93 -51.93 -0.36 0.58 16 34 H 0.39 4.84 7.97 -40.82 -0.33 4.52 16 35 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 36 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 37 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -32.40 310.93 -7.31 -39.71 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.23 Total: 4.69 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.24 Total: 1.50 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.06 Total: -53.07 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.40 -7.31 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883656151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.787 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds