Wall clock time and date at job start Sun Mar 29 2020 22:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48502 * 109.46959 * 274.59621 * 3 2 1 5 5 H 1.48499 * 109.47068 * 34.58785 * 3 2 1 6 6 H 1.48498 * 109.47771 * 154.59630 * 3 2 1 7 7 C 1.37881 * 119.99733 * 179.71994 * 2 1 3 8 8 H 1.07999 * 120.00237 * 355.15239 * 7 2 1 9 9 C 1.50706 * 119.99992 * 175.15608 * 7 2 1 10 10 C 1.52998 * 115.55001 * 99.46481 * 9 7 2 11 11 N 1.46898 * 109.47402 * 305.10657 * 10 9 7 12 12 C 1.46898 * 111.00354 * 185.76554 * 11 10 9 13 13 H 1.09003 * 109.06897 * 36.73447 * 12 11 10 14 14 C 1.46578 * 109.08441 * 155.78069 * 12 11 10 15 15 N 1.47801 * 112.42045 * 181.31318 * 14 12 11 16 16 C 1.44347 * 110.29202 * 279.56098 * 15 14 12 17 17 C 1.53843 * 112.11738 * 92.44249 * 16 15 14 18 18 O 1.44244 * 112.83169 * 318.50659 * 17 16 15 19 19 C 1.40358 * 117.09875 * 317.91273 * 18 17 16 20 20 C 1.53003 * 117.49764 * 313.76214 * 9 7 2 21 21 C 1.52993 * 117.49765 * 245.13703 * 9 7 2 22 22 H 0.97000 * 120.00255 * 0.27882 * 1 2 3 23 23 H 1.09001 * 109.46924 * 65.10409 * 10 9 7 24 24 H 1.08994 * 109.47420 * 185.10349 * 10 9 7 25 25 H 1.00901 * 111.00170 * 61.80895 * 11 10 9 26 26 H 1.09002 * 108.89360 * 302.07766 * 14 12 11 27 27 H 1.08998 * 108.89098 * 60.65746 * 14 12 11 28 28 H 1.00900 * 110.99679 * 156.11474 * 15 14 12 29 29 H 1.08995 * 108.95110 * 213.12590 * 16 15 14 30 30 H 1.09000 * 108.94971 * 331.76319 * 16 15 14 31 31 H 1.08997 * 108.81052 * 79.37263 * 17 16 15 32 32 H 1.08996 * 108.80726 * 197.75433 * 17 16 15 33 33 H 1.09000 * 109.62602 * 333.33968 * 19 18 17 34 34 H 1.08999 * 109.51848 * 212.98823 * 19 18 17 35 35 H 1.08999 * 117.49976 * 359.97438 * 20 9 7 36 36 H 1.08998 * 117.49739 * 145.01896 * 20 9 7 37 37 H 1.09003 * 117.49767 * 214.97818 * 21 9 7 38 38 H 1.08998 * 117.50106 * 0.02562 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3995 2.1024 -1.3956 5 1 1.4985 2.6227 0.7948 6 1 3.5919 1.4140 0.6006 7 6 2.0044 -1.1941 0.0058 8 1 1.4673 -2.1273 0.0894 9 6 3.5074 -1.1970 -0.1044 10 6 4.2655 -1.3609 1.2145 11 7 3.8282 -0.3274 2.1624 12 6 4.6309 -0.3672 3.3920 13 1 5.6622 -0.6106 3.1364 14 6 4.5941 0.9513 4.0313 15 7 5.4069 1.0027 5.2647 16 6 4.6771 0.4279 6.3695 17 6 4.9761 -1.0711 6.5438 18 8 5.0408 -1.7787 5.2885 19 6 4.0705 -1.4618 4.3252 20 6 4.1389 -0.3069 -1.1767 21 6 4.1228 -1.8264 -1.3558 22 1 -0.4850 0.8400 -0.0041 23 1 4.0599 -2.3468 1.6316 24 1 5.3355 -1.2589 1.0337 25 1 2.8450 -0.4191 2.3693 26 1 4.9711 1.6947 3.3289 27 1 3.5612 1.1939 4.2807 28 1 5.6905 1.9486 5.4717 29 1 4.9502 0.9522 7.2851 30 1 3.6092 0.5578 6.1941 31 1 5.9301 -1.1816 7.0592 32 1 4.1925 -1.5167 7.1566 33 1 3.1707 -1.0948 4.8188 34 1 3.8320 -2.3513 3.7422 35 1 3.4672 0.2805 -1.8027 36 1 5.0945 0.1622 -0.9426 37 1 5.0679 -2.3569 -1.2396 38 1 3.4405 -2.2379 -2.0996 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925652060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:48 Heat of formation + Delta-G solvation = -0.340142 kcal Electronic energy + Delta-G solvation = -18277.591517 eV Core-core repulsion = 15542.355510 eV Total energy + Delta-G solvation = -2735.236008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44142 -37.27170 -35.55080 -34.65320 -32.00695 -30.38874 -27.46614 -26.10140 -25.53736 -23.84425 -21.53782 -21.14326 -20.43134 -18.81248 -17.23923 -16.35084 -16.21440 -15.60060 -14.93302 -14.65873 -14.49576 -14.12316 -13.77509 -13.52358 -13.25428 -12.52590 -12.47498 -12.11560 -11.70780 -11.53674 -11.32584 -11.01823 -10.73605 -10.51123 -10.37661 -10.21036 -9.88109 -9.60161 -9.39355 -8.93897 -8.58260 -8.54378 -8.37569 -7.43011 -6.04260 -4.09785 3.44091 3.55019 3.73774 3.85199 4.21663 4.61533 4.81950 4.89580 4.93163 5.03514 5.23024 5.28290 5.31903 5.42303 5.49241 5.66326 5.66476 5.81327 5.87514 5.97553 6.13029 6.21991 6.28897 6.41217 6.44093 6.58010 6.58847 6.81524 6.96160 7.10698 7.20381 7.29824 7.50084 7.81478 7.88403 8.14885 8.54385 8.96221 9.60155 11.05710 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027913 B = 0.007690 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.888928 B = 3640.390287 C = 3929.810407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.296 1.296 5 H -0.308 1.308 6 H -0.207 1.207 7 C -0.494 4.494 8 H 0.072 0.928 9 C 0.009 3.991 10 C 0.104 3.896 11 N -0.666 5.666 12 C 0.060 3.940 13 H 0.085 0.915 14 C 0.068 3.932 15 N -0.681 5.681 16 C 0.024 3.976 17 C 0.071 3.929 18 O -0.379 6.379 19 C 0.041 3.959 20 C -0.196 4.196 21 C -0.188 4.188 22 H 0.262 0.738 23 H 0.024 0.976 24 H 0.049 0.951 25 H 0.353 0.647 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.346 0.654 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 1.575 11.174 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.224 1.224 5 H -0.236 1.236 6 H -0.129 1.129 7 C -0.532 4.532 8 H 0.090 0.910 9 C 0.008 3.992 10 C -0.025 4.025 11 N -0.300 5.300 12 C -0.051 4.051 13 H 0.104 0.896 14 C -0.060 4.060 15 N -0.312 5.312 16 C -0.107 4.107 17 C -0.006 4.006 18 O -0.296 6.296 19 C -0.038 4.038 20 C -0.233 4.233 21 C -0.226 4.226 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.174 0.826 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.164 0.836 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.387 1.462 10.748 15.018 hybrid contribution -1.100 1.090 0.518 1.633 sum 9.287 2.552 11.265 14.822 Atomic orbital electron populations 1.69937 1.06778 1.27173 1.50038 1.25036 0.94499 0.99503 0.93261 0.87028 0.83927 0.81891 0.77149 1.22414 1.23580 1.12896 1.20251 0.86887 0.94356 1.51679 0.90964 1.19379 0.95045 0.98910 0.85912 1.21490 0.96670 0.91437 0.92878 1.60641 1.08741 1.50769 1.09874 1.21158 0.99725 0.93853 0.90351 0.89644 1.20905 0.95245 0.98720 0.91161 1.59459 1.43442 1.25155 1.03172 1.22302 0.96851 0.96692 0.94831 1.23001 1.01521 0.90478 0.85641 1.87413 1.54246 1.62938 1.25047 1.23273 0.90836 0.99400 0.90316 1.22852 1.01250 0.92938 1.06257 1.22901 1.01006 0.94895 1.03765 0.92814 0.95772 0.93251 0.82595 0.90205 0.94857 0.83584 0.90873 0.94253 0.89595 0.93514 0.93757 0.89614 0.89955 0.90786 0.91215 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.08 2.23 5.35 -17.82 -0.10 2.14 16 3 Si 0.87 21.52 23.33 -169.99 -3.97 17.55 16 4 H -0.30 -7.51 6.96 56.52 0.39 -7.12 16 5 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.21 -4.76 5.28 56.52 0.30 -4.47 16 7 C -0.49 -13.42 8.64 -34.44 -0.30 -13.72 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.01 0.20 1.39 -155.66 -0.22 -0.02 16 10 C 0.10 2.08 5.40 -3.83 -0.02 2.06 16 11 N -0.67 -12.79 3.68 -109.24 -0.40 -13.19 16 12 C 0.06 0.99 2.42 -70.06 -0.17 0.82 16 13 H 0.09 1.49 7.71 -51.93 -0.40 1.09 16 14 C 0.07 1.01 5.43 -6.39 -0.03 0.97 16 15 N -0.68 -8.36 6.57 -117.88 -0.77 -9.14 16 16 C 0.02 0.26 5.90 -4.75 -0.03 0.24 16 17 C 0.07 0.84 7.02 37.60 0.26 1.10 16 18 O -0.38 -5.86 10.28 -33.76 -0.35 -6.20 16 19 C 0.04 0.64 5.71 37.87 0.22 0.86 16 20 C -0.20 -4.27 7.10 -26.73 -0.19 -4.46 16 21 C -0.19 -3.88 9.95 -26.73 -0.27 -4.15 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.48 7.23 -51.93 -0.38 0.10 16 24 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 25 H 0.35 7.38 7.41 -39.29 -0.29 7.09 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.03 0.50 7.39 -51.93 -0.38 0.12 16 28 H 0.35 3.46 8.89 -39.29 -0.35 3.11 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.46 6.72 -51.93 -0.35 0.11 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.67 7.14 -51.93 -0.37 0.30 16 34 H 0.09 1.41 7.10 -51.93 -0.37 1.04 16 35 H 0.08 1.93 6.02 -51.93 -0.31 1.62 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -29.92 288.28 -7.45 -37.36 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.24 Total: 9.83 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.84 Total: -14.16 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.40 Total: -48.73 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.35 Total: -6.20 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -3.97 Total: 17.55 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.92 -7.45 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925652060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.024 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds