Wall clock time and date at job start Sun Mar 29 2020 22:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48502 * 109.46959 * 274.59621 * 3 2 1 5 5 H 1.48499 * 109.47068 * 34.58785 * 3 2 1 6 6 H 1.48498 * 109.47771 * 154.59630 * 3 2 1 7 7 C 1.37881 * 119.99733 * 179.71994 * 2 1 3 8 8 H 1.07999 * 120.00237 * 355.15239 * 7 2 1 9 9 C 1.50706 * 119.99992 * 175.15608 * 7 2 1 10 10 C 1.52998 * 115.55001 * 99.46481 * 9 7 2 11 11 N 1.46898 * 109.47402 * 305.10657 * 10 9 7 12 12 C 1.46898 * 111.00354 * 185.76554 * 11 10 9 13 13 H 1.09003 * 109.06897 * 36.73447 * 12 11 10 14 14 C 1.46578 * 109.08441 * 155.78069 * 12 11 10 15 15 N 1.47801 * 112.42045 * 181.31318 * 14 12 11 16 16 C 1.44347 * 110.29202 * 279.56098 * 15 14 12 17 17 C 1.53843 * 112.11738 * 92.44249 * 16 15 14 18 18 O 1.44244 * 112.83169 * 318.50659 * 17 16 15 19 19 C 1.40358 * 117.09875 * 317.91273 * 18 17 16 20 20 C 1.53003 * 117.49764 * 313.76214 * 9 7 2 21 21 C 1.52993 * 117.49765 * 245.13703 * 9 7 2 22 22 H 0.97000 * 120.00255 * 0.27882 * 1 2 3 23 23 H 1.09001 * 109.46924 * 65.10409 * 10 9 7 24 24 H 1.08994 * 109.47420 * 185.10349 * 10 9 7 25 25 H 1.00901 * 111.00170 * 61.80895 * 11 10 9 26 26 H 1.09002 * 108.89360 * 302.07766 * 14 12 11 27 27 H 1.08998 * 108.89098 * 60.65746 * 14 12 11 28 28 H 1.00900 * 110.99679 * 156.11474 * 15 14 12 29 29 H 1.08995 * 108.95110 * 213.12590 * 16 15 14 30 30 H 1.09000 * 108.94971 * 331.76319 * 16 15 14 31 31 H 1.08997 * 108.81052 * 79.37263 * 17 16 15 32 32 H 1.08996 * 108.80726 * 197.75433 * 17 16 15 33 33 H 1.09000 * 109.62602 * 333.33968 * 19 18 17 34 34 H 1.08999 * 109.51848 * 212.98823 * 19 18 17 35 35 H 1.08999 * 117.49976 * 359.97438 * 20 9 7 36 36 H 1.08998 * 117.49739 * 145.01896 * 20 9 7 37 37 H 1.09003 * 117.49767 * 214.97818 * 21 9 7 38 38 H 1.08998 * 117.50106 * 0.02562 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3995 2.1024 -1.3956 5 1 1.4985 2.6227 0.7948 6 1 3.5919 1.4140 0.6006 7 6 2.0044 -1.1941 0.0058 8 1 1.4673 -2.1273 0.0894 9 6 3.5074 -1.1970 -0.1044 10 6 4.2655 -1.3609 1.2145 11 7 3.8282 -0.3274 2.1624 12 6 4.6309 -0.3672 3.3920 13 1 5.6622 -0.6106 3.1364 14 6 4.5941 0.9513 4.0313 15 7 5.4069 1.0027 5.2647 16 6 4.6771 0.4279 6.3695 17 6 4.9761 -1.0711 6.5438 18 8 5.0408 -1.7787 5.2885 19 6 4.0705 -1.4618 4.3252 20 6 4.1389 -0.3069 -1.1767 21 6 4.1228 -1.8264 -1.3558 22 1 -0.4850 0.8400 -0.0041 23 1 4.0599 -2.3468 1.6316 24 1 5.3355 -1.2589 1.0337 25 1 2.8450 -0.4191 2.3693 26 1 4.9711 1.6947 3.3289 27 1 3.5612 1.1939 4.2807 28 1 5.6905 1.9486 5.4717 29 1 4.9502 0.9522 7.2851 30 1 3.6092 0.5578 6.1941 31 1 5.9301 -1.1816 7.0592 32 1 4.1925 -1.5167 7.1566 33 1 3.1707 -1.0948 4.8188 34 1 3.8320 -2.3513 3.7422 35 1 3.4672 0.2805 -1.8027 36 1 5.0945 0.1622 -0.9426 37 1 5.0679 -2.3569 -1.2396 38 1 3.4405 -2.2379 -2.0996 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925652060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:48 Heat of formation + Delta-G solvation = -23.897128 kcal Electronic energy + Delta-G solvation = -18278.613025 eV Core-core repulsion = 15542.355510 eV Total energy + Delta-G solvation = -2736.257515 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60461 -38.92401 -36.74709 -35.89657 -34.16338 -31.61548 -28.67353 -27.56974 -27.23653 -25.36404 -23.23837 -22.10408 -21.70869 -20.66698 -18.39003 -18.12552 -17.51293 -16.78194 -16.71292 -16.06994 -15.61676 -15.46123 -15.24233 -14.86093 -14.69026 -14.47900 -13.87302 -13.66691 -13.20266 -12.95602 -12.67591 -12.39384 -12.31240 -11.98131 -11.85492 -11.68673 -11.57631 -11.37738 -10.83572 -10.76097 -10.56347 -10.18795 -9.51334 -8.95667 -8.23402 -6.31436 1.45171 1.53346 1.86656 2.53868 2.64484 3.09459 3.17003 3.33866 3.71611 3.85262 3.93680 4.08721 4.17986 4.22877 4.39426 4.41945 4.45406 4.58411 4.60976 4.62773 4.73912 4.81883 4.85906 4.91771 4.96006 5.05050 5.13415 5.23673 5.37524 5.52423 5.80736 5.94462 6.24414 6.34192 6.48899 6.50769 6.55568 6.79027 7.41559 8.90251 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027913 B = 0.007690 C = 0.007123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.888928 B = 3640.390287 C = 3929.810407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.031 3.969 3 Si 0.933 3.067 4 H -0.304 1.304 5 H -0.317 1.317 6 H -0.177 1.177 7 C -0.488 4.488 8 H 0.027 0.973 9 C -0.015 4.015 10 C 0.114 3.886 11 N -0.674 5.674 12 C 0.068 3.932 13 H 0.080 0.920 14 C 0.072 3.928 15 N -0.682 5.682 16 C 0.024 3.976 17 C 0.061 3.939 18 O -0.398 6.398 19 C 0.049 3.951 20 C -0.192 4.192 21 C -0.173 4.173 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.071 0.929 25 H 0.340 0.660 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.361 0.639 29 H 0.105 0.895 30 H 0.031 0.969 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.383 2.420 12.322 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.232 1.232 5 H -0.246 1.246 6 H -0.098 1.098 7 C -0.525 4.525 8 H 0.046 0.954 9 C -0.016 4.016 10 C -0.015 4.015 11 N -0.306 5.306 12 C -0.043 4.043 13 H 0.098 0.902 14 C -0.057 4.057 15 N -0.315 5.315 16 C -0.107 4.107 17 C -0.015 4.015 18 O -0.315 6.315 19 C -0.030 4.030 20 C -0.229 4.229 21 C -0.211 4.211 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.089 0.911 25 H 0.159 0.841 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.181 0.819 29 H 0.123 0.877 30 H 0.049 0.951 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.128 2.298 11.911 17.874 hybrid contribution -1.955 0.710 0.195 2.089 sum 11.173 3.008 12.106 16.746 Atomic orbital electron populations 1.70074 1.08659 1.27841 1.52648 1.25774 0.94907 1.02805 0.93157 0.86122 0.83901 0.77470 0.76481 1.23186 1.24647 1.09758 1.20397 0.89569 0.92404 1.50150 0.95435 1.19367 0.92667 1.01416 0.88181 1.21361 0.97206 0.91615 0.91349 1.60639 1.08184 1.50468 1.11329 1.21128 0.98632 0.95055 0.89462 0.90188 1.20767 0.95278 0.97415 0.92245 1.59387 1.42960 1.26425 1.02687 1.22350 0.96287 0.96355 0.95712 1.23287 1.02988 0.90964 0.84281 1.87376 1.54062 1.63927 1.26178 1.23055 0.91005 0.98502 0.90440 1.22865 1.01736 0.93444 1.04845 1.22943 1.01933 0.94626 1.01564 0.92986 0.96100 0.91081 0.84074 0.90456 0.95601 0.81888 0.87659 0.95065 0.88042 0.92236 0.93670 0.91040 0.91950 0.88038 0.87638 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 2 C 0.03 1.78 5.35 84.66 0.45 2.23 16 3 Si 0.93 44.80 23.33 68.60 1.60 46.40 16 4 H -0.30 -14.86 6.96 99.48 0.69 -14.17 16 5 H -0.32 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.18 -7.56 5.28 99.48 0.52 -7.04 16 7 C -0.49 -27.03 8.64 25.60 0.22 -26.81 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 9 C -0.02 -0.67 1.39 -52.93 -0.07 -0.74 16 10 C 0.11 4.32 5.40 86.30 0.47 4.78 16 11 N -0.67 -24.85 3.68 -499.53 -1.84 -26.69 16 12 C 0.07 2.10 2.42 43.39 0.11 2.21 16 13 H 0.08 2.59 7.71 -2.39 -0.02 2.57 16 14 C 0.07 1.97 5.43 84.15 0.46 2.42 16 15 N -0.68 -14.74 6.57 -526.85 -3.46 -18.20 16 16 C 0.02 0.44 5.90 87.06 0.51 0.96 16 17 C 0.06 1.29 7.02 72.27 0.51 1.80 16 18 O -0.40 -11.58 10.28 -143.73 -1.48 -13.05 16 19 C 0.05 1.50 5.71 72.45 0.41 1.91 16 20 C -0.19 -7.84 7.10 30.60 0.22 -7.62 16 21 C -0.17 -6.74 9.95 30.59 0.30 -6.44 16 22 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 23 H 0.02 0.80 7.23 -2.39 -0.02 0.78 16 24 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16 25 H 0.34 14.13 7.41 -89.69 -0.66 13.47 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.03 0.74 7.39 -2.39 -0.02 0.72 16 28 H 0.36 6.01 8.89 -89.69 -0.80 5.21 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.03 0.66 6.72 -2.39 -0.02 0.64 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 1.34 7.14 -2.39 -0.02 1.32 16 34 H 0.07 2.34 7.10 -2.39 -0.02 2.32 16 35 H 0.06 2.81 6.02 -2.39 -0.01 2.80 16 36 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -65.29 288.28 -1.89 -67.18 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.60 Total: 28.72 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.58 Total: -25.31 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -5.00 Total: -103.94 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.48 Total: -13.05 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.60 Total: 46.40 kcal Total: -65.29 -1.89 -67.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925652060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.285 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds