Wall clock time and date at job start Sun Mar 29 2020 22:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99601 * 2 1 4 4 H 1.48507 * 109.46936 * 239.99933 * 3 2 1 5 5 H 1.48494 * 109.47470 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47324 * 120.00340 * 3 2 1 7 7 C 1.38813 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99892 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.47375 * 125.98667 * 359.96306 * 9 7 2 11 11 C 1.54468 * 107.16530 * 181.42492 * 10 9 7 12 12 C 1.55918 * 102.69013 * 22.71489 * 11 10 9 13 13 H 1.09001 * 113.34888 * 203.07848 * 12 11 10 14 14 C 1.46568 * 125.98545 * 179.97438 * 9 7 2 15 15 H 1.09006 * 108.27863 * 270.67255 * 14 9 7 16 16 C 1.51416 * 112.69094 * 31.05935 * 14 9 7 17 17 C 1.52996 * 110.82138 * 67.99990 * 16 14 9 18 18 C 1.53287 * 108.23244 * 57.06754 * 17 16 14 19 19 N 1.46505 * 108.67951 * 297.57538 * 18 17 16 20 20 C 1.46900 * 111.00041 * 188.73279 * 19 18 17 21 21 C 1.53004 * 109.46720 * 66.04904 * 20 19 18 22 22 O 1.42894 * 109.47481 * 65.00060 * 21 20 19 23 23 H 0.96998 * 120.00601 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.89713 * 62.04338 * 10 9 7 25 25 H 1.08997 * 110.04186 * 300.89084 * 10 9 7 26 26 H 1.08999 * 110.76650 * 264.41544 * 11 10 9 27 27 H 1.08999 * 110.92454 * 141.08431 * 11 10 9 28 28 H 1.09004 * 109.20861 * 188.34835 * 16 14 9 29 29 H 1.09005 * 109.20232 * 307.65377 * 16 14 9 30 30 H 1.09003 * 109.70772 * 176.75455 * 17 16 14 31 31 H 1.09003 * 109.71316 * 297.34017 * 17 16 14 32 32 H 1.09004 * 109.60078 * 57.33171 * 18 17 16 33 33 H 1.09001 * 109.60388 * 177.81584 * 18 17 16 34 34 H 1.08995 * 109.46953 * 186.04436 * 20 19 18 35 35 H 1.08997 * 109.47109 * 306.04942 * 20 19 18 36 36 H 1.09004 * 109.46685 * 185.00315 * 21 20 19 37 37 H 1.08999 * 109.47250 * 304.99554 * 21 20 19 38 38 H 0.96696 * 113.99958 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1401 -2.5418 0.0008 11 6 -0.4395 -4.0567 0.0369 12 6 0.8696 -4.6503 0.6410 13 1 1.0246 -5.6995 0.3893 14 6 1.9222 -3.7268 -0.0016 15 1 2.0716 -4.0337 -1.0368 16 6 3.2535 -3.7736 0.7181 17 6 3.0684 -3.5459 2.2196 18 6 2.0972 -4.6069 2.7494 19 7 0.8011 -4.4276 2.0903 20 6 -0.2249 -5.2799 2.7058 21 6 -0.4794 -4.8156 4.1413 22 8 -1.0398 -3.5013 4.1247 23 1 -0.4851 0.8400 0.0004 24 1 -0.5600 -2.1021 -0.9039 25 1 -0.5656 -2.0584 0.8801 26 1 -0.6100 -4.4411 -0.9687 27 1 -1.2931 -4.2696 0.6804 28 1 3.7141 -4.7484 0.5573 29 1 3.9061 -2.9988 0.3156 30 1 4.0286 -3.6403 2.7269 31 1 2.6574 -2.5512 2.3927 32 1 2.4855 -5.6011 2.5283 33 1 1.9790 -4.4892 3.8266 34 1 -1.1487 -5.2085 2.1317 35 1 0.1189 -6.3142 2.7139 36 1 -1.1743 -5.5008 4.6269 37 1 0.4617 -4.8024 4.6911 38 1 -1.2278 -3.1427 5.0028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934256209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:29 Heat of formation + Delta-G solvation = -7.526981 kcal Electronic energy + Delta-G solvation = -18984.295538 eV Core-core repulsion = 16248.747886 eV Total energy + Delta-G solvation = -2735.547653 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.34087 -36.65702 -34.77443 -33.09423 -31.96201 -29.12944 -27.93049 -27.45562 -24.41579 -23.48606 -21.49705 -20.99483 -19.56852 -18.36805 -17.12051 -16.17374 -15.95114 -14.89414 -14.57600 -14.34885 -13.84867 -13.63396 -13.48304 -12.91284 -12.51290 -12.22483 -11.88484 -11.76094 -11.39092 -11.22243 -10.89697 -10.77023 -10.66683 -10.32184 -10.25514 -9.94603 -9.72182 -9.67490 -9.45630 -9.41559 -9.26000 -8.36526 -7.56627 -6.55066 -5.48935 -2.79130 3.51539 3.55501 3.56857 4.31959 4.58022 4.66380 5.22413 5.27783 5.41630 5.48653 5.55032 5.63185 5.70083 5.77711 5.81361 5.89232 5.95065 6.06578 6.11952 6.17488 6.30574 6.35371 6.50132 6.66468 6.68681 6.83285 6.89048 7.04321 7.20764 7.71205 7.76722 7.85564 7.96088 8.01652 8.15140 8.51108 9.44341 10.06682 10.76002 11.63059 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.009254 C = 0.008643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.316578 B = 3024.989560 C = 3238.926846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.215 4.215 8 H 0.074 0.926 9 N -0.583 5.583 10 C 0.193 3.807 11 C -0.139 4.139 12 C 0.070 3.930 13 H 0.042 0.958 14 C 0.174 3.826 15 H 0.017 0.983 16 C -0.117 4.117 17 C -0.108 4.108 18 C 0.063 3.937 19 N -0.504 5.504 20 C 0.052 3.948 21 C 0.083 3.917 22 O -0.547 6.547 23 H 0.249 0.751 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.017 0.983 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -11.683 6.796 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.343 4.343 8 H 0.092 0.908 9 N -0.308 5.308 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.039 4.039 13 H 0.059 0.941 14 C 0.066 3.934 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.145 4.145 18 C -0.065 4.065 19 N -0.229 5.229 20 C -0.076 4.076 21 C 0.004 3.996 22 O -0.349 6.349 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.688 -11.037 6.187 12.672 hybrid contribution 0.659 0.036 0.574 0.874 sum 1.347 -11.002 6.760 12.983 Atomic orbital electron populations 1.69962 1.04704 1.24584 1.57353 1.24721 0.95565 0.97214 1.02988 0.86314 0.78438 0.84038 0.77638 1.21540 1.21839 1.21455 1.18868 0.90144 0.82416 1.42907 0.90823 1.44163 1.01570 0.98946 1.86127 1.21014 0.84006 0.87665 1.00420 1.23187 0.95831 1.00630 0.98143 1.22928 0.98464 0.95604 0.86903 0.94052 1.20398 0.90697 0.87532 0.94757 0.96621 1.21348 0.98423 0.99711 0.96057 1.21482 0.96714 1.01026 0.95309 1.22036 0.89872 0.96512 0.98066 1.61325 1.05229 1.53997 1.02381 1.22134 0.97431 0.93241 0.94761 1.22171 0.96062 0.84656 0.96694 1.86769 1.84766 1.30981 1.32430 0.94058 0.94997 0.92869 0.93079 0.91874 0.93960 0.91732 0.93286 0.89295 0.96487 0.91713 0.89830 0.94756 0.94428 0.94108 0.78775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.09 10.37 55.49 0.58 -27.51 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.90 22.89 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.21 -6.07 9.34 -15.06 -0.14 -6.21 16 8 H 0.07 2.01 6.60 -52.48 -0.35 1.67 16 9 N -0.58 -15.24 3.24 -164.29 -0.53 -15.77 16 10 C 0.19 5.01 5.24 -2.79 -0.01 5.00 16 11 C -0.14 -2.85 6.35 -24.40 -0.15 -3.00 16 12 C 0.07 1.34 3.07 -65.66 -0.20 1.14 16 13 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 14 C 0.17 3.77 3.02 -68.14 -0.21 3.56 16 15 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 16 C -0.12 -2.24 5.13 -27.53 -0.14 -2.38 16 17 C -0.11 -1.98 6.10 -26.58 -0.16 -2.14 16 18 C 0.06 1.05 5.34 -3.89 -0.02 1.03 16 19 N -0.50 -9.29 3.98 -224.36 -0.89 -10.18 16 20 C 0.05 0.80 5.21 -3.82 -0.02 0.78 16 21 C 0.08 1.12 7.11 37.16 0.26 1.39 16 22 O -0.55 -8.94 13.61 -35.23 -0.48 -9.42 16 23 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.03 0.91 7.55 -51.93 -0.39 0.52 16 25 H 0.05 1.57 7.39 -51.93 -0.38 1.19 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.23 5.99 -51.93 -0.31 0.92 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.31 6.82 -51.93 -0.35 0.96 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 2.01 7.79 -51.93 -0.40 1.61 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 1.00 6.05 -51.93 -0.31 0.68 16 34 H 0.08 1.34 5.96 -51.93 -0.31 1.03 16 35 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.52 6.19 -51.93 -0.32 0.20 16 38 H 0.37 4.16 9.12 45.56 0.42 4.58 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -32.66 286.34 -8.17 -40.83 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.24 Total: 1.08 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.89 Total: -1.20 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.85 Total: -53.47 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.48 Total: -9.42 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.66 -8.17 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934256209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.301 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds