Wall clock time and date at job start Sun Mar 29 2020 22:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.47023 * 125.65037 * 0.30479 * 4 2 1 6 6 C 1.54316 * 107.27276 * 181.01937 * 5 4 2 7 7 C 1.55156 * 102.94559 * 22.19474 * 6 5 4 8 8 C 1.52998 * 111.00761 * 206.38808 * 7 6 5 9 9 C 1.50691 * 111.00523 * 82.57037 * 7 6 5 10 10 O 1.21291 * 120.00377 * 0.02562 * 9 7 6 11 11 N 1.34783 * 120.00224 * 180.02562 * 9 7 6 12 12 C 1.37093 * 120.00518 * 180.02562 * 11 9 7 13 13 H 1.08002 * 119.99491 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00291 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00043 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46817 * 89.99589 * 16 14 12 18 18 H 1.48493 * 109.47053 * 209.99730 * 16 14 12 19 19 H 1.48496 * 109.47032 * 329.99907 * 16 14 12 20 20 C 1.47423 * 125.65041 * 179.97438 * 4 2 1 21 21 H 1.09000 * 109.46964 * 90.00343 * 1 2 3 22 22 H 1.09003 * 109.47060 * 210.00156 * 1 2 3 23 23 H 1.09001 * 109.46926 * 330.00454 * 1 2 3 24 24 H 1.08997 * 109.88157 * 300.44099 * 5 4 2 25 25 H 1.09005 * 109.88313 * 61.44869 * 5 4 2 26 26 H 1.09004 * 110.71946 * 140.55644 * 6 5 4 27 27 H 1.09001 * 110.72591 * 263.82662 * 6 5 4 28 28 H 1.09002 * 109.47291 * 59.99268 * 8 7 6 29 29 H 1.09001 * 109.47234 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.46981 * 299.99658 * 8 7 6 31 31 H 0.97001 * 119.99581 * 359.97438 * 11 9 7 32 32 H 0.97005 * 120.00387 * 180.02562 * 15 14 12 33 33 H 1.09004 * 110.36778 * 274.75408 * 20 4 2 34 34 H 1.09006 * 110.36423 * 37.07061 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.5747 -2.5066 0.0059 6 6 2.7279 -3.5315 0.0398 7 6 3.9057 -2.7102 0.6278 8 6 5.2513 -3.2738 0.1670 9 6 3.8311 -2.6597 2.1320 10 8 2.9273 -3.2219 2.7136 11 7 4.7687 -1.9899 2.8312 12 6 4.7011 -1.9444 4.1997 13 1 3.8963 -2.4450 4.7175 14 6 5.6674 -1.2534 4.9204 15 7 6.6464 -0.6439 4.2903 16 14 5.5750 -1.1909 6.7851 17 1 6.3249 -2.3382 7.3566 18 1 6.1716 0.0803 7.2679 19 1 4.1550 -1.2652 7.2131 20 6 3.6480 -1.3124 0.0059 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 0.9447 -2.6282 0.8870 25 1 0.9797 -2.6444 -0.8969 26 1 2.4797 -4.3700 0.6905 27 1 2.9645 -3.8793 -0.9658 28 1 5.3077 -3.2360 -0.9210 29 1 6.0594 -2.6792 0.5932 30 1 5.3456 -4.3074 0.5000 31 1 5.4917 -1.5406 2.3661 32 1 7.3212 -0.1618 4.7934 33 1 4.0334 -1.2707 -1.0128 34 1 4.1060 -0.5351 0.6178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116182848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:43 Heat of formation + Delta-G solvation = -79.828342 kcal Electronic energy + Delta-G solvation = -17892.189295 eV Core-core repulsion = 15017.673326 eV Total energy + Delta-G solvation = -2874.515969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.14148 -38.42161 -36.44609 -33.96539 -32.90062 -31.19687 -29.73375 -29.29069 -25.89301 -25.13100 -22.96975 -21.72884 -19.11124 -18.48717 -17.85831 -16.71237 -16.34371 -15.48449 -14.89858 -14.57341 -14.09199 -13.97503 -13.70877 -13.11695 -12.77650 -12.64862 -12.49326 -12.32055 -12.09174 -11.80617 -11.73920 -11.57948 -11.10950 -10.92047 -10.77555 -10.48095 -10.38542 -10.16274 -9.62533 -9.52174 -8.46159 -8.29054 -7.98459 -6.42858 -3.83835 2.88025 3.16683 3.26124 3.27402 3.31836 3.80975 4.15329 4.60561 4.79342 4.84281 5.02352 5.23685 5.28896 5.34969 5.43746 5.48291 5.69374 5.73167 5.85052 5.88221 5.92834 6.01008 6.07909 6.23410 6.33310 6.39243 6.52114 6.61893 7.53800 7.78625 8.03473 8.41130 8.57613 9.15302 9.52149 10.02036 10.74568 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.007642 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.430320 B = 3662.850600 C = 4071.070604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.524 3.476 3 O -0.551 6.551 4 N -0.613 5.613 5 C 0.106 3.894 6 C -0.106 4.106 7 C -0.089 4.089 8 C -0.132 4.132 9 C 0.456 3.544 10 O -0.593 6.593 11 N -0.554 5.554 12 C -0.302 4.302 13 H 0.103 0.897 14 C 0.024 3.976 15 N -0.897 5.897 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.118 3.882 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.393 0.607 32 H 0.273 0.727 33 H 0.070 0.930 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 -3.739 -10.445 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.314 3.686 3 O -0.429 6.429 4 N -0.347 5.347 5 C -0.017 4.017 6 C -0.145 4.145 7 C -0.093 4.093 8 C -0.190 4.190 9 C 0.241 3.759 10 O -0.479 6.479 11 N -0.188 5.188 12 C -0.432 4.432 13 H 0.121 0.879 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.005 4.005 21 H 0.108 0.892 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.226 0.774 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.638 -3.344 -9.955 12.424 hybrid contribution 0.480 0.307 0.697 0.900 sum -6.158 -3.037 -9.258 11.526 Atomic orbital electron populations 1.21856 0.91767 1.04910 1.04168 1.20425 0.90302 0.82112 0.75793 1.90715 1.70813 1.30722 1.50699 1.48475 1.07425 1.05973 1.72827 1.22029 0.96785 0.81582 1.01309 1.22515 0.93103 0.98070 1.00764 1.21918 0.96787 0.95292 0.95335 1.21695 0.94889 1.01701 1.00689 1.19318 0.84867 0.84559 0.87141 1.90484 1.36528 1.50158 1.70709 1.41839 1.24204 1.45592 1.07184 1.19701 1.10930 1.31306 0.81241 0.87934 1.25277 0.95431 0.96320 1.00756 1.69608 1.13593 1.33885 1.36730 0.85860 0.78696 0.77585 0.82166 1.20344 1.20851 1.19429 1.22351 0.80918 0.96842 1.00385 0.89223 0.90104 0.89067 0.90620 0.91856 0.88690 0.90757 0.92141 0.91547 0.91680 0.77373 0.91751 0.91138 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 9.91 36.01 0.36 -1.67 16 2 C 0.52 9.13 7.96 -10.98 -0.09 9.04 16 3 O -0.55 -11.91 17.35 5.55 0.10 -11.81 16 4 N -0.61 -10.27 3.31 -170.37 -0.56 -10.83 16 5 C 0.11 1.48 5.86 -3.07 -0.02 1.46 16 6 C -0.11 -1.52 5.61 -24.90 -0.14 -1.66 16 7 C -0.09 -1.54 0.81 -153.39 -0.12 -1.66 16 8 C -0.13 -1.91 8.58 37.16 0.32 -1.59 16 9 C 0.46 10.61 6.39 -10.99 -0.07 10.54 16 10 O -0.59 -15.56 15.16 5.55 0.08 -15.48 16 11 N -0.55 -14.16 5.13 -10.97 -0.06 -14.21 16 12 C -0.30 -8.51 9.68 -14.94 -0.14 -8.65 16 13 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 14 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 15 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 16 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.12 2.04 5.84 -2.40 -0.01 2.02 16 21 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.08 0.88 7.06 -51.93 -0.37 0.51 16 23 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.08 1.15 7.76 -51.93 -0.40 0.75 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.47 7.41 -51.93 -0.38 1.09 16 27 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 28 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.07 1.03 7.37 -51.93 -0.38 0.64 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.39 9.76 7.13 -40.82 -0.29 9.47 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.07 1.04 7.99 -51.93 -0.41 0.62 16 34 H 0.08 1.69 7.91 -51.93 -0.41 1.27 16 LS Contribution 287.79 15.07 4.34 4.34 Total: -1.00 -33.55 287.79 -5.11 -38.66 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.69 Total: 8.69 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.02 Total: 8.40 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.10 Total: -49.09 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: 0.18 Total: -27.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.55 -5.11 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116182848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.170 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds