Wall clock time and date at job start Sun Mar 29 2020 22:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.47023 * 125.65037 * 0.30479 * 4 2 1 6 6 C 1.54316 * 107.27276 * 181.01937 * 5 4 2 7 7 C 1.55156 * 102.94559 * 22.19474 * 6 5 4 8 8 C 1.52998 * 111.00761 * 206.38808 * 7 6 5 9 9 C 1.50691 * 111.00523 * 82.57037 * 7 6 5 10 10 O 1.21291 * 120.00377 * 0.02562 * 9 7 6 11 11 N 1.34783 * 120.00224 * 180.02562 * 9 7 6 12 12 C 1.37093 * 120.00518 * 180.02562 * 11 9 7 13 13 H 1.08002 * 119.99491 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00291 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00043 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46817 * 89.99589 * 16 14 12 18 18 H 1.48493 * 109.47053 * 209.99730 * 16 14 12 19 19 H 1.48496 * 109.47032 * 329.99907 * 16 14 12 20 20 C 1.47423 * 125.65041 * 179.97438 * 4 2 1 21 21 H 1.09000 * 109.46964 * 90.00343 * 1 2 3 22 22 H 1.09003 * 109.47060 * 210.00156 * 1 2 3 23 23 H 1.09001 * 109.46926 * 330.00454 * 1 2 3 24 24 H 1.08997 * 109.88157 * 300.44099 * 5 4 2 25 25 H 1.09005 * 109.88313 * 61.44869 * 5 4 2 26 26 H 1.09004 * 110.71946 * 140.55644 * 6 5 4 27 27 H 1.09001 * 110.72591 * 263.82662 * 6 5 4 28 28 H 1.09002 * 109.47291 * 59.99268 * 8 7 6 29 29 H 1.09001 * 109.47234 * 179.97438 * 8 7 6 30 30 H 1.09004 * 109.46981 * 299.99658 * 8 7 6 31 31 H 0.97001 * 119.99581 * 359.97438 * 11 9 7 32 32 H 0.97005 * 120.00387 * 180.02562 * 15 14 12 33 33 H 1.09004 * 110.36778 * 274.75408 * 20 4 2 34 34 H 1.09006 * 110.36423 * 37.07061 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.5747 -2.5066 0.0059 6 6 2.7279 -3.5315 0.0398 7 6 3.9057 -2.7102 0.6278 8 6 5.2513 -3.2738 0.1670 9 6 3.8311 -2.6597 2.1320 10 8 2.9273 -3.2219 2.7136 11 7 4.7687 -1.9899 2.8312 12 6 4.7011 -1.9444 4.1997 13 1 3.8963 -2.4450 4.7175 14 6 5.6674 -1.2534 4.9204 15 7 6.6464 -0.6439 4.2903 16 14 5.5750 -1.1909 6.7851 17 1 6.3249 -2.3382 7.3566 18 1 6.1716 0.0803 7.2679 19 1 4.1550 -1.2652 7.2131 20 6 3.6480 -1.3124 0.0059 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 0.9447 -2.6282 0.8870 25 1 0.9797 -2.6444 -0.8969 26 1 2.4797 -4.3700 0.6905 27 1 2.9645 -3.8793 -0.9658 28 1 5.3077 -3.2360 -0.9210 29 1 6.0594 -2.6792 0.5932 30 1 5.3456 -4.3074 0.5000 31 1 5.4917 -1.5406 2.3661 32 1 7.3212 -0.1618 4.7934 33 1 4.0334 -1.2707 -1.0128 34 1 4.1060 -0.5351 0.6178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116182848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:43 Heat of formation + Delta-G solvation = -104.785923 kcal Electronic energy + Delta-G solvation = -17893.271537 eV Core-core repulsion = 15017.673326 eV Total energy + Delta-G solvation = -2875.598211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57877 -40.03695 -38.02789 -36.00216 -34.32533 -33.16370 -30.83191 -30.54456 -27.26517 -27.00310 -24.27810 -23.30150 -20.42081 -20.32784 -19.67583 -18.14826 -17.77021 -17.02329 -16.64580 -16.08201 -15.89209 -15.55085 -15.17816 -14.60780 -14.20449 -13.86219 -13.81712 -13.55133 -13.45237 -13.27753 -13.08493 -12.99947 -12.92351 -12.49708 -12.21264 -12.09531 -12.02611 -11.66808 -11.52773 -11.00915 -10.28302 -10.05279 -9.67475 -8.50938 -6.00243 1.33586 1.36894 1.50087 1.56694 1.98154 2.05442 2.25457 3.10910 3.11835 3.39334 3.64484 3.86876 3.97895 4.27138 4.32867 4.41798 4.45275 4.55364 4.60857 4.72309 4.75525 4.87696 4.96359 4.99758 5.05082 5.21510 5.31799 5.33192 5.38179 5.95491 6.51398 6.53727 7.07037 7.09762 7.51847 8.05195 8.66580 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.007642 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.430320 B = 3662.850600 C = 4071.070604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.509 3.491 3 O -0.607 6.607 4 N -0.618 5.618 5 C 0.103 3.897 6 C -0.100 4.100 7 C -0.086 4.086 8 C -0.127 4.127 9 C 0.453 3.547 10 O -0.626 6.626 11 N -0.569 5.569 12 C -0.337 4.337 13 H 0.080 0.920 14 C -0.015 4.015 15 N -0.920 5.920 16 Si 0.993 3.007 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.273 1.273 20 C 0.118 3.882 21 H 0.125 0.875 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.393 0.607 32 H 0.278 0.722 33 H 0.106 0.894 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 -4.727 -12.067 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.301 3.699 3 O -0.489 6.489 4 N -0.351 5.351 5 C -0.019 4.019 6 C -0.137 4.137 7 C -0.090 4.090 8 C -0.185 4.185 9 C 0.241 3.759 10 O -0.514 6.514 11 N -0.204 5.204 12 C -0.466 4.466 13 H 0.098 0.902 14 C -0.214 4.214 15 N -0.561 5.561 16 Si 0.817 3.183 17 H -0.191 1.191 18 H -0.197 1.197 19 H -0.198 1.198 20 C -0.006 4.006 21 H 0.143 0.857 22 H 0.113 0.887 23 H 0.109 0.891 24 H 0.076 0.924 25 H 0.130 0.870 26 H 0.099 0.901 27 H 0.140 0.860 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.404 -4.371 -11.595 14.434 hybrid contribution 0.685 0.575 1.170 1.473 sum -6.718 -3.795 -10.425 12.970 Atomic orbital electron populations 1.21884 0.87516 1.05596 1.06621 1.21463 0.92420 0.81418 0.74608 1.90683 1.72292 1.32604 1.53326 1.48699 1.07329 1.07047 1.72031 1.22243 0.96840 0.79887 1.02909 1.22613 0.91406 0.97066 1.02656 1.21898 0.99999 0.96593 0.90503 1.21710 0.92378 1.01066 1.03347 1.20495 0.83145 0.82268 0.89987 1.90450 1.37461 1.50982 1.72497 1.41944 1.25147 1.46657 1.06649 1.19692 1.11290 1.32791 0.82831 0.90184 1.26095 0.94725 0.95451 1.05159 1.69681 1.13969 1.34098 1.38350 0.84927 0.78491 0.78253 0.76675 1.19066 1.19706 1.19802 1.22354 0.81694 0.95185 1.01359 0.85719 0.88662 0.89073 0.92410 0.86954 0.90110 0.86027 0.87749 0.93282 0.91507 0.77347 0.91271 0.87624 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.91 71.24 0.71 -2.73 16 2 C 0.51 17.36 7.96 87.66 0.70 18.05 16 3 O -0.61 -26.73 17.35 -3.04 -0.05 -26.78 16 4 N -0.62 -19.79 3.31 -811.31 -2.68 -22.47 16 5 C 0.10 2.57 5.86 86.73 0.51 3.08 16 6 C -0.10 -2.53 5.61 31.78 0.18 -2.35 16 7 C -0.09 -2.86 0.81 -51.46 -0.04 -2.90 16 8 C -0.13 -3.43 8.58 71.98 0.62 -2.81 16 9 C 0.45 21.58 6.39 87.65 0.56 22.15 16 10 O -0.63 -33.76 15.16 -3.06 -0.05 -33.81 16 11 N -0.57 -30.27 5.13 -306.99 -1.58 -31.85 16 12 C -0.34 -19.71 9.68 84.04 0.81 -18.89 16 13 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 14 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 15 N -0.92 -51.74 13.05 21.66 0.28 -51.46 16 16 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C 0.12 3.94 5.84 86.94 0.51 4.45 16 21 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.09 1.81 7.06 -2.39 -0.02 1.79 16 23 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.66 7.76 -2.39 -0.02 1.64 16 25 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.08 2.34 7.41 -2.38 -0.02 2.32 16 27 H 0.12 2.00 8.04 -2.39 -0.02 1.98 16 28 H 0.10 1.92 8.07 -2.39 -0.02 1.90 16 29 H 0.05 1.49 7.37 -2.39 -0.02 1.47 16 30 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.39 20.46 7.13 -92.71 -0.66 19.79 16 32 H 0.28 14.61 8.31 -92.70 -0.77 13.84 16 33 H 0.11 2.81 7.99 -2.39 -0.02 2.79 16 34 H 0.04 1.71 7.91 -2.38 -0.02 1.69 16 Total: -1.00 -77.24 287.79 3.41 -73.83 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.44 Total: 28.52 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 5.01 Total: 17.72 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.98 Total: -105.78 kcal Atomic # 8 Polarization: -60.49 SS G_CDS: -0.10 Total: -60.59 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -77.24 3.41 -73.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116182848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.954 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds