Wall clock time and date at job start Sun Mar 29 2020 22:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21279 * 120.00451 * 2 1 4 4 N 1.34783 * 120.00046 * 180.02562 * 2 1 3 5 5 C 1.48119 * 127.03093 * 0.04646 * 4 2 1 6 6 C 1.54942 * 103.25329 * 140.66987 * 5 4 2 7 7 C 1.54612 * 102.84015 * 37.37576 * 6 5 4 8 8 C 1.53006 * 110.32886 * 97.04301 * 7 6 5 9 9 C 1.50704 * 110.41248 * 219.21261 * 7 6 5 10 10 O 1.21287 * 119.99963 * 358.50638 * 9 7 6 11 11 N 1.34780 * 119.99895 * 178.50528 * 9 7 6 12 12 C 1.37091 * 120.00165 * 179.97438 * 11 9 7 13 13 H 1.08010 * 119.99758 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00461 * 180.02562 * 12 11 9 15 15 N 1.31415 * 120.00095 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99747 * 0.02562 * 14 12 11 17 17 H 1.48491 * 109.47383 * 89.99697 * 16 14 12 18 18 H 1.48501 * 109.46981 * 209.99848 * 16 14 12 19 19 H 1.48501 * 109.47232 * 329.99614 * 16 14 12 20 20 C 1.47490 * 127.03633 * 179.97438 * 4 2 1 21 21 H 1.09002 * 109.47108 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47005 * 299.99302 * 1 2 3 23 23 H 1.08997 * 109.47126 * 59.99590 * 1 2 3 24 24 H 1.08999 * 110.65764 * 259.11180 * 5 4 2 25 25 H 1.08996 * 110.66532 * 22.05922 * 5 4 2 26 26 H 1.08993 * 110.74303 * 279.03332 * 6 5 4 27 27 H 1.09005 * 110.73736 * 155.71030 * 6 5 4 28 28 H 1.09001 * 109.47002 * 302.92225 * 8 7 6 29 29 H 1.08993 * 109.46955 * 62.92662 * 8 7 6 30 30 H 1.09000 * 109.47050 * 182.92491 * 8 7 6 31 31 H 0.97004 * 120.00223 * 0.02562 * 11 9 7 32 32 H 0.96996 * 119.99720 * 180.02562 * 15 14 12 33 33 H 1.08999 * 109.91041 * 86.12112 * 20 4 2 34 34 H 1.08992 * 109.91083 * 324.84789 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6029 -2.5310 -0.0021 6 6 2.5390 -3.3125 -0.9580 7 6 3.9308 -2.7219 -0.6347 8 6 4.6724 -3.6207 0.3569 9 6 4.7383 -2.5582 -1.8965 10 8 4.2741 -2.9031 -2.9626 11 7 5.9764 -2.0284 -1.8403 12 6 6.7112 -1.8799 -2.9881 13 1 6.2978 -2.1872 -3.9375 14 6 7.9878 -1.3343 -2.9302 15 7 8.6919 -1.1916 -4.0305 16 14 8.7030 -0.8037 -1.2881 17 1 9.4313 -1.9427 -0.6741 18 1 9.6413 0.3278 -1.4994 19 1 7.6048 -0.3740 -0.3855 20 6 3.6447 -1.3479 -0.0011 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.6295 -2.9611 0.9991 25 1 0.5828 -2.5160 -0.3858 26 1 2.2723 -3.1252 -1.9980 27 1 2.5119 -4.3797 -0.7376 28 1 4.0718 -3.7397 1.2587 29 1 4.8449 -4.5968 -0.0963 30 1 5.6288 -3.1657 0.6147 31 1 6.3478 -1.7528 -0.9876 32 1 9.5832 -0.8110 -3.9900 33 1 4.0219 -1.3248 1.0212 34 1 4.1154 -0.5617 -0.5911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116182849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:45 Heat of formation + Delta-G solvation = -69.528550 kcal Electronic energy + Delta-G solvation = -17773.452371 eV Core-core repulsion = 14899.383034 eV Total energy + Delta-G solvation = -2874.069337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.30603 -38.66483 -36.77357 -34.06778 -32.96724 -31.62881 -29.94585 -29.37894 -26.16531 -25.06772 -23.61096 -21.25028 -19.32537 -19.01215 -18.02178 -16.91745 -16.10067 -15.76191 -15.28070 -14.99770 -14.33318 -13.98780 -13.58246 -13.31045 -12.94672 -12.84735 -12.59762 -12.34025 -12.21189 -12.13208 -12.09700 -11.79024 -11.24279 -11.16061 -10.79927 -10.64158 -10.47583 -9.97941 -9.80705 -9.60268 -8.77287 -8.43639 -8.20986 -6.33623 -3.85084 2.69034 3.01070 3.04166 3.06546 3.15365 3.64002 4.09016 4.41400 4.49660 4.65049 4.87264 5.06751 5.14078 5.22431 5.23844 5.33634 5.38913 5.45052 5.63136 5.68637 5.78441 5.79716 5.90859 6.11263 6.17496 6.21474 6.32222 6.51951 7.53670 7.60017 8.11141 8.21718 8.55080 8.91119 9.39300 9.76888 10.79211 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.007378 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.272974 B = 3794.207252 C = 4109.541324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.526 3.474 3 O -0.548 6.548 4 N -0.618 5.618 5 C 0.098 3.902 6 C -0.113 4.113 7 C -0.090 4.090 8 C -0.134 4.134 9 C 0.462 3.538 10 O -0.573 6.573 11 N -0.582 5.582 12 C -0.307 4.307 13 H 0.120 0.880 14 C 0.044 3.956 15 N -0.878 5.878 16 Si 0.875 3.125 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.268 1.268 20 C 0.114 3.886 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.371 0.629 32 H 0.274 0.726 33 H 0.071 0.929 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 -3.567 12.971 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.316 3.684 3 O -0.426 6.426 4 N -0.353 5.353 5 C -0.025 4.025 6 C -0.151 4.151 7 C -0.095 4.095 8 C -0.192 4.192 9 C 0.247 3.753 10 O -0.457 6.457 11 N -0.219 5.219 12 C -0.436 4.436 13 H 0.138 0.862 14 C -0.159 4.159 15 N -0.517 5.517 16 Si 0.701 3.299 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.193 1.193 20 C -0.010 4.010 21 H 0.096 0.904 22 H 0.111 0.889 23 H 0.113 0.887 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.204 0.796 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.856 -3.049 12.133 17.939 hybrid contribution 0.840 0.442 1.198 1.528 sum -12.017 -2.607 13.331 18.136 Atomic orbital electron populations 1.21866 0.91510 1.04275 1.05103 1.20470 0.90261 0.81967 0.75713 1.90738 1.70690 1.30675 1.50496 1.48878 1.07514 1.05932 1.72950 1.22676 0.98189 0.81736 0.99910 1.22697 0.91794 0.99217 1.01414 1.21615 0.96797 0.95340 0.95733 1.21859 0.99918 0.99695 0.97742 1.19348 0.82691 0.83891 0.89331 1.90537 1.70545 1.54160 1.30424 1.42204 1.14434 1.55996 1.09289 1.19450 0.96674 1.39373 0.88092 0.86211 1.25034 0.96186 0.97313 0.97375 1.69618 1.11613 1.43809 1.26695 0.86734 0.79982 0.79540 0.83675 1.19436 1.19961 1.19307 1.22164 0.81113 0.96985 1.00696 0.90417 0.88903 0.88726 0.90888 0.89846 0.88562 0.89800 0.91952 0.91385 0.92170 0.79604 0.91524 0.91077 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.23 36.00 0.37 -1.24 16 2 C 0.53 8.00 8.00 -10.99 -0.09 7.91 16 3 O -0.55 -10.94 17.44 5.56 0.10 -10.84 16 4 N -0.62 -8.93 3.29 -169.78 -0.56 -9.49 16 5 C 0.10 1.03 6.83 -2.13 -0.01 1.02 16 6 C -0.11 -1.54 5.97 -24.86 -0.15 -1.69 16 7 C -0.09 -1.47 0.80 -154.30 -0.12 -1.59 16 8 C -0.13 -1.76 8.10 37.16 0.30 -1.45 16 9 C 0.46 10.47 6.26 -10.98 -0.07 10.40 16 10 O -0.57 -15.28 15.02 5.55 0.08 -15.20 16 11 N -0.58 -14.03 4.89 -10.96 -0.05 -14.08 16 12 C -0.31 -8.77 10.16 -14.94 -0.15 -8.92 16 13 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 14 C 0.04 1.23 5.50 -17.47 -0.10 1.14 16 15 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 16 Si 0.87 19.72 27.74 -169.99 -4.71 15.00 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -5.61 6.52 56.52 0.37 -5.24 16 20 C 0.11 1.84 6.24 -2.99 -0.02 1.83 16 21 H 0.08 0.55 5.92 -51.93 -0.31 0.24 16 22 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.68 6.39 -51.93 -0.33 0.35 16 26 H 0.10 1.60 6.90 -51.93 -0.36 1.24 16 27 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.79 7.62 -51.93 -0.40 0.40 16 31 H 0.37 8.00 5.21 -40.82 -0.21 7.79 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 34 H 0.08 1.64 7.53 -51.93 -0.39 1.25 16 LS Contribution 282.66 15.07 4.26 4.26 Total: -1.00 -35.22 282.66 -4.63 -39.85 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.47 Total: 8.16 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.04 Total: 7.39 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.16 Total: -48.63 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: 0.18 Total: -26.04 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -35.22 -4.63 -39.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116182849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.677 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds