Wall clock time and date at job start Sun Mar 29 2020 22:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21279 * 120.00451 * 2 1 4 4 N 1.34783 * 120.00046 * 180.02562 * 2 1 3 5 5 C 1.48119 * 127.03093 * 0.04646 * 4 2 1 6 6 C 1.54942 * 103.25329 * 140.66987 * 5 4 2 7 7 C 1.54612 * 102.84015 * 37.37576 * 6 5 4 8 8 C 1.53006 * 110.32886 * 97.04301 * 7 6 5 9 9 C 1.50704 * 110.41248 * 219.21261 * 7 6 5 10 10 O 1.21287 * 119.99963 * 358.50638 * 9 7 6 11 11 N 1.34780 * 119.99895 * 178.50528 * 9 7 6 12 12 C 1.37091 * 120.00165 * 179.97438 * 11 9 7 13 13 H 1.08010 * 119.99758 * 0.02562 * 12 11 9 14 14 C 1.38948 * 120.00461 * 180.02562 * 12 11 9 15 15 N 1.31415 * 120.00095 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99747 * 0.02562 * 14 12 11 17 17 H 1.48491 * 109.47383 * 89.99697 * 16 14 12 18 18 H 1.48501 * 109.46981 * 209.99848 * 16 14 12 19 19 H 1.48501 * 109.47232 * 329.99614 * 16 14 12 20 20 C 1.47490 * 127.03633 * 179.97438 * 4 2 1 21 21 H 1.09002 * 109.47108 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47005 * 299.99302 * 1 2 3 23 23 H 1.08997 * 109.47126 * 59.99590 * 1 2 3 24 24 H 1.08999 * 110.65764 * 259.11180 * 5 4 2 25 25 H 1.08996 * 110.66532 * 22.05922 * 5 4 2 26 26 H 1.08993 * 110.74303 * 279.03332 * 6 5 4 27 27 H 1.09005 * 110.73736 * 155.71030 * 6 5 4 28 28 H 1.09001 * 109.47002 * 302.92225 * 8 7 6 29 29 H 1.08993 * 109.46955 * 62.92662 * 8 7 6 30 30 H 1.09000 * 109.47050 * 182.92491 * 8 7 6 31 31 H 0.97004 * 120.00223 * 0.02562 * 11 9 7 32 32 H 0.96996 * 119.99720 * 180.02562 * 15 14 12 33 33 H 1.08999 * 109.91041 * 86.12112 * 20 4 2 34 34 H 1.08992 * 109.91083 * 324.84789 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.6029 -2.5310 -0.0021 6 6 2.5390 -3.3125 -0.9580 7 6 3.9308 -2.7219 -0.6347 8 6 4.6724 -3.6207 0.3569 9 6 4.7383 -2.5582 -1.8965 10 8 4.2741 -2.9031 -2.9626 11 7 5.9764 -2.0284 -1.8403 12 6 6.7112 -1.8799 -2.9881 13 1 6.2978 -2.1872 -3.9375 14 6 7.9878 -1.3343 -2.9302 15 7 8.6919 -1.1916 -4.0305 16 14 8.7030 -0.8037 -1.2881 17 1 9.4313 -1.9427 -0.6741 18 1 9.6413 0.3278 -1.4994 19 1 7.6048 -0.3740 -0.3855 20 6 3.6447 -1.3479 -0.0011 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.6295 -2.9611 0.9991 25 1 0.5828 -2.5160 -0.3858 26 1 2.2723 -3.1252 -1.9980 27 1 2.5119 -4.3797 -0.7376 28 1 4.0718 -3.7397 1.2587 29 1 4.8449 -4.5968 -0.0963 30 1 5.6288 -3.1657 0.6147 31 1 6.3478 -1.7528 -0.9876 32 1 9.5832 -0.8110 -3.9900 33 1 4.0219 -1.3248 1.0212 34 1 4.1154 -0.5617 -0.5911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116182849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:45 Heat of formation + Delta-G solvation = -97.564857 kcal Electronic energy + Delta-G solvation = -17774.668116 eV Core-core repulsion = 14899.383034 eV Total energy + Delta-G solvation = -2875.285082 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63241 -40.17992 -38.22254 -36.12848 -34.33576 -33.60128 -30.85851 -30.47696 -27.39350 -26.91251 -24.77239 -22.79664 -21.01611 -20.40186 -19.64819 -18.20050 -17.47335 -17.20132 -16.83658 -16.41370 -15.69868 -15.67755 -15.03271 -14.78792 -14.49905 -14.35016 -13.78918 -13.55072 -13.48032 -13.08049 -13.04560 -13.01556 -12.88123 -12.50869 -12.42995 -12.06586 -11.97400 -11.60558 -11.58142 -11.00501 -10.46036 -10.32006 -9.76277 -8.48606 -6.09357 1.23914 1.27444 1.36694 1.56561 1.82539 2.00131 2.15672 2.80370 3.05512 3.37146 3.59211 3.84889 3.89852 4.15264 4.27049 4.36246 4.44122 4.53826 4.62510 4.71588 4.75141 4.83724 4.93731 5.01862 5.08171 5.18995 5.25370 5.40100 5.49779 5.87669 6.49355 6.54265 6.79226 7.09883 7.30752 7.84957 8.68922 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.007378 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.272974 B = 3794.207252 C = 4109.541324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.513 3.487 3 O -0.610 6.610 4 N -0.622 5.622 5 C 0.105 3.895 6 C -0.115 4.115 7 C -0.083 4.083 8 C -0.132 4.132 9 C 0.458 3.542 10 O -0.622 6.622 11 N -0.585 5.585 12 C -0.332 4.332 13 H 0.057 0.943 14 C -0.010 4.010 15 N -0.929 5.929 16 Si 0.954 3.046 17 H -0.245 1.245 18 H -0.272 1.272 19 H -0.242 1.242 20 C 0.112 3.888 21 H 0.110 0.890 22 H 0.112 0.888 23 H 0.097 0.903 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.387 0.613 32 H 0.281 0.719 33 H 0.102 0.898 34 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.615 -4.520 17.241 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.305 3.695 3 O -0.492 6.492 4 N -0.356 5.356 5 C -0.016 4.016 6 C -0.153 4.153 7 C -0.087 4.087 8 C -0.189 4.189 9 C 0.247 3.753 10 O -0.508 6.508 11 N -0.224 5.224 12 C -0.461 4.461 13 H 0.075 0.925 14 C -0.209 4.209 15 N -0.569 5.569 16 Si 0.774 3.226 17 H -0.169 1.169 18 H -0.197 1.197 19 H -0.166 1.166 20 C -0.012 4.012 21 H 0.129 0.871 22 H 0.130 0.870 23 H 0.115 0.885 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.222 0.778 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.474 -4.053 16.417 22.259 hybrid contribution 1.253 0.683 -0.288 1.456 sum -13.221 -3.370 16.129 21.126 Atomic orbital electron populations 1.21910 0.86829 1.06770 1.06103 1.21591 0.92461 0.81161 0.74296 1.90705 1.72308 1.32889 1.53325 1.49092 1.06842 1.07529 1.72095 1.22974 0.98503 0.78770 1.01361 1.22752 0.90789 1.01556 1.00228 1.21638 0.97376 0.96782 0.92875 1.21918 1.00321 0.98394 0.98291 1.20768 0.82206 0.81065 0.91307 1.90510 1.71501 1.55415 1.33370 1.42063 1.14966 1.56928 1.08479 1.19042 0.98078 1.41285 0.87735 0.92451 1.26053 0.95856 0.96441 1.02555 1.69788 1.12366 1.44793 1.29959 0.85514 0.79621 0.79687 0.77769 1.16904 1.19665 1.16572 1.22097 0.82731 0.95032 1.01362 0.87148 0.87001 0.88485 0.86570 0.86788 0.92489 0.86767 0.87257 0.91560 0.92208 0.77801 0.90983 0.88001 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.23 71.23 0.73 -1.73 16 2 C 0.51 14.70 8.00 87.65 0.70 15.41 16 3 O -0.61 -24.50 17.44 -3.03 -0.05 -24.55 16 4 N -0.62 -16.30 3.29 -809.44 -2.66 -18.96 16 5 C 0.10 1.70 6.83 86.73 0.59 2.29 16 6 C -0.11 -2.83 5.97 31.81 0.19 -2.64 16 7 C -0.08 -2.54 0.80 -52.04 -0.04 -2.58 16 8 C -0.13 -2.91 8.10 71.98 0.58 -2.33 16 9 C 0.46 21.42 6.26 87.66 0.55 21.97 16 10 O -0.62 -35.20 15.02 -3.05 -0.05 -35.25 16 11 N -0.58 -29.03 4.89 -306.98 -1.50 -30.53 16 12 C -0.33 -20.15 10.16 84.04 0.85 -19.30 16 13 H 0.06 4.10 7.39 -2.91 -0.02 4.08 16 14 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 15 N -0.93 -57.17 13.96 21.66 0.30 -56.87 16 16 Si 0.95 40.52 27.74 68.60 1.90 42.42 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.24 -9.16 6.52 99.48 0.65 -8.51 16 20 C 0.11 3.43 6.24 86.52 0.54 3.97 16 21 H 0.11 0.97 5.92 -2.39 -0.01 0.95 16 22 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.11 1.21 6.39 -2.39 -0.02 1.19 16 26 H 0.06 1.88 6.90 -2.39 -0.02 1.86 16 27 H 0.11 2.12 7.85 -2.38 -0.02 2.10 16 28 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.34 7.62 -2.39 -0.02 1.32 16 31 H 0.39 16.47 5.21 -92.71 -0.48 15.98 16 32 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.10 2.50 7.68 -2.39 -0.02 2.48 16 34 H 0.04 1.44 7.53 -2.39 -0.02 1.42 16 Total: -1.00 -87.28 282.66 3.68 -83.60 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.57 Total: 25.17 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 5.16 Total: 14.97 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -3.86 Total: -106.37 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: -0.10 Total: -59.80 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.90 Total: 42.42 kcal Total: -87.28 3.68 -83.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116182849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.964 kcal (2) G-P(sol) polarization free energy of solvation -87.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds