Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45757 * 117.94938 * 2 1 4 4 C 1.52905 * 110.49542 * 160.93936 * 3 2 1 5 5 C 1.53339 * 108.68503 * 50.72281 * 4 3 2 6 6 H 1.09001 * 109.70530 * 52.23293 * 5 4 3 7 7 C 1.50702 * 109.67108 * 172.74533 * 5 4 3 8 8 O 1.21283 * 120.00262 * 358.97113 * 7 5 4 9 9 N 1.34777 * 119.99928 * 178.69018 * 7 5 4 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 5 11 11 C 1.50694 * 109.47550 * 180.02562 * 10 9 7 12 12 H 1.08008 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00446 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00374 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99796 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47502 * 89.99760 * 15 13 11 17 17 H 1.48498 * 109.47116 * 209.99875 * 15 13 11 18 18 H 1.48503 * 109.46936 * 329.99405 * 15 13 11 19 19 C 1.53065 * 108.42888 * 292.48061 * 5 4 3 20 20 C 1.33350 * 117.94449 * 179.97438 * 2 1 3 21 21 O 1.21287 * 118.24731 * 2.20139 * 20 2 1 22 22 H 1.08994 * 109.47193 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47206 * 300.01974 * 1 2 3 24 24 H 1.09000 * 109.47097 * 60.02230 * 1 2 3 25 25 H 1.08998 * 109.29904 * 281.23709 * 3 2 1 26 26 H 1.09006 * 109.29521 * 40.61312 * 3 2 1 27 27 H 1.08998 * 109.58636 * 290.96873 * 4 3 2 28 28 H 1.08998 * 109.60404 * 170.49234 * 4 3 2 29 29 H 0.97000 * 120.00317 * 0.28382 * 9 7 5 30 30 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 31 31 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 32 32 H 0.97000 * 120.00464 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.40562 * 169.03200 * 19 5 4 34 34 H 1.09006 * 109.40254 * 288.77062 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2876 0.0000 4 6 3.5949 1.1260 0.4677 5 6 4.2492 -0.0015 -0.3396 6 1 4.1092 0.1804 -1.4052 7 6 5.7217 -0.0626 -0.0246 8 8 6.2087 0.7298 0.7538 9 7 6.4963 -1.0013 -0.6035 10 6 7.9266 -1.0645 -0.2927 11 6 8.5592 -2.1931 -1.0653 12 1 7.9563 -2.8022 -1.7226 13 6 9.9080 -2.4475 -0.9340 14 7 10.4600 -3.4327 -1.6079 15 14 10.9509 -1.3936 0.2022 16 1 10.9590 -1.9902 1.5621 17 1 12.3401 -1.3297 -0.3185 18 1 10.3828 -0.0231 0.2663 19 6 3.5838 -1.3240 0.0491 20 6 2.0899 -1.1780 0.0005 21 8 1.4158 -2.1854 -0.0401 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5141 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 2.1399 1.6997 -1.0090 26 1 1.6271 1.9718 0.6697 27 1 3.6101 0.8731 1.5279 28 1 4.1384 2.0564 0.3035 29 1 6.1069 -1.6351 -1.2261 30 1 8.4008 -0.1234 -0.5710 31 1 8.0589 -1.2360 0.7756 32 1 11.4089 -3.6115 -1.5159 33 1 3.8942 -2.1038 -0.6464 34 1 3.8880 -1.5994 1.0589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116850654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = -80.406694 kcal Electronic energy + Delta-G solvation = -17170.400253 eV Core-core repulsion = 14295.859204 eV Total energy + Delta-G solvation = -2874.541049 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77086 -39.03009 -36.42091 -34.40772 -34.12114 -32.36589 -29.93934 -28.31559 -27.16057 -24.75677 -23.29678 -21.64742 -19.90163 -18.81032 -17.55825 -16.70182 -16.61815 -16.13575 -15.62862 -15.22916 -14.89146 -14.35465 -14.10127 -13.73379 -13.44098 -13.10131 -12.85048 -12.48364 -12.40776 -12.14681 -11.88742 -11.73242 -11.18316 -11.09517 -10.95743 -10.79576 -10.10246 -9.99174 -9.52519 -9.18188 -8.93415 -8.81096 -8.23146 -6.23737 -4.26550 2.51213 2.82877 3.07200 3.24677 3.31438 3.38771 3.78680 4.30722 4.38825 4.48453 4.67234 4.72444 5.06875 5.11041 5.11502 5.18042 5.23145 5.31197 5.47051 5.62530 5.64166 5.73103 5.86968 6.05949 6.17263 6.74961 7.01965 7.13698 7.24262 7.34460 8.00923 8.07207 8.45095 8.70497 8.83558 9.35765 10.88182 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.045431 B = 0.005062 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.173339 B = 5529.925628 C = 5985.692792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.114 3.886 4 C -0.115 4.115 5 C -0.112 4.112 6 H 0.102 0.898 7 C 0.506 3.494 8 O -0.555 6.555 9 N -0.702 5.702 10 C 0.219 3.781 11 C -0.545 4.545 12 H 0.080 0.920 13 C 0.078 3.922 14 N -0.891 5.891 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.261 1.261 19 C -0.125 4.125 20 C 0.522 3.478 21 O -0.554 6.554 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.397 0.603 30 H 0.026 0.974 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.110 0.890 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.060 9.504 2.261 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C -0.009 4.009 4 C -0.153 4.153 5 C -0.134 4.134 6 H 0.120 0.880 7 C 0.290 3.710 8 O -0.434 6.434 9 N -0.350 5.350 10 C 0.097 3.903 11 C -0.583 4.583 12 H 0.098 0.902 13 C -0.126 4.126 14 N -0.528 5.528 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.185 1.185 19 C -0.165 4.165 20 C 0.311 3.689 21 O -0.433 6.433 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.231 0.769 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.819 9.430 2.750 19.478 hybrid contribution 0.551 0.202 0.183 0.614 sum -16.269 9.632 2.933 19.133 Atomic orbital electron populations 1.21762 0.79745 1.04667 1.01184 1.47242 1.07487 1.06285 1.73304 1.21476 0.93237 0.84281 1.01879 1.21703 0.93147 0.99798 1.00677 1.21460 0.93445 0.96012 1.02493 0.87951 1.20256 0.87746 0.81594 0.81383 1.90659 1.75273 1.41343 1.36137 1.46225 1.11213 1.32322 1.45225 1.19518 0.76444 0.97825 0.96479 1.21088 0.94729 1.14857 1.27650 0.90199 1.24797 0.97585 0.94866 0.95331 1.69878 1.12502 1.29319 1.41141 0.86816 0.79804 0.81808 0.81242 1.19837 1.20885 1.18542 1.21665 0.90549 0.98371 1.05956 1.20095 0.90756 0.82726 0.75287 1.90704 1.66177 1.35808 1.50603 0.89044 0.92277 0.92246 0.91393 0.90290 0.90268 0.88518 0.76892 0.95631 0.96073 0.92220 0.87202 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.48 59.85 0.63 1.22 16 2 N -0.61 -6.35 3.21 -182.86 -0.59 -6.94 16 3 C 0.11 0.92 6.40 -4.49 -0.03 0.89 16 4 C -0.12 -1.20 4.71 -26.60 -0.13 -1.33 16 5 C -0.11 -1.38 2.60 -91.56 -0.24 -1.61 16 6 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 7 C 0.51 8.80 7.14 -10.98 -0.08 8.72 16 8 O -0.55 -11.62 15.89 5.55 0.09 -11.53 16 9 N -0.70 -13.46 5.45 -61.47 -0.34 -13.80 16 10 C 0.22 5.24 4.50 -5.20 -0.02 5.21 16 11 C -0.55 -14.71 9.83 -34.44 -0.34 -15.04 16 12 H 0.08 2.25 7.84 -52.48 -0.41 1.83 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 15 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 19 C -0.13 -1.55 5.18 -28.10 -0.15 -1.69 16 20 C 0.52 6.88 7.47 -11.87 -0.09 6.79 16 21 O -0.55 -9.19 15.95 5.55 0.09 -9.10 16 22 H 0.09 0.96 6.59 -51.93 -0.34 0.61 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 28 H 0.10 1.02 7.89 -51.93 -0.41 0.61 16 29 H 0.40 6.75 8.00 -40.82 -0.33 6.42 16 30 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.11 1.32 7.91 -51.93 -0.41 0.91 16 34 H 0.11 1.36 8.09 -51.93 -0.42 0.94 16 LS Contribution 284.65 15.07 4.29 4.29 Total: -1.00 -33.43 284.65 -5.68 -39.11 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.79 Total: 1.74 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -0.54 Total: 5.25 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.15 Total: -46.22 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: 0.18 Total: -20.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.43 -5.68 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116850654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.296 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds