Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.45757 * 117.94938 * 2 1 4 4 C 1.52905 * 110.49542 * 160.93936 * 3 2 1 5 5 C 1.53339 * 108.68503 * 50.72281 * 4 3 2 6 6 H 1.09001 * 109.70530 * 52.23293 * 5 4 3 7 7 C 1.50702 * 109.67108 * 172.74533 * 5 4 3 8 8 O 1.21283 * 120.00262 * 358.97113 * 7 5 4 9 9 N 1.34777 * 119.99928 * 178.69018 * 7 5 4 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 5 11 11 C 1.50694 * 109.47550 * 180.02562 * 10 9 7 12 12 H 1.08008 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00446 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00374 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99796 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47502 * 89.99760 * 15 13 11 17 17 H 1.48498 * 109.47116 * 209.99875 * 15 13 11 18 18 H 1.48503 * 109.46936 * 329.99405 * 15 13 11 19 19 C 1.53065 * 108.42888 * 292.48061 * 5 4 3 20 20 C 1.33350 * 117.94449 * 179.97438 * 2 1 3 21 21 O 1.21287 * 118.24731 * 2.20139 * 20 2 1 22 22 H 1.08994 * 109.47193 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47206 * 300.01974 * 1 2 3 24 24 H 1.09000 * 109.47097 * 60.02230 * 1 2 3 25 25 H 1.08998 * 109.29904 * 281.23709 * 3 2 1 26 26 H 1.09006 * 109.29521 * 40.61312 * 3 2 1 27 27 H 1.08998 * 109.58636 * 290.96873 * 4 3 2 28 28 H 1.08998 * 109.60404 * 170.49234 * 4 3 2 29 29 H 0.97000 * 120.00317 * 0.28382 * 9 7 5 30 30 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 31 31 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 32 32 H 0.97000 * 120.00464 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.40562 * 169.03200 * 19 5 4 34 34 H 1.09006 * 109.40254 * 288.77062 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1482 1.2876 0.0000 4 6 3.5949 1.1260 0.4677 5 6 4.2492 -0.0015 -0.3396 6 1 4.1092 0.1804 -1.4052 7 6 5.7217 -0.0626 -0.0246 8 8 6.2087 0.7298 0.7538 9 7 6.4963 -1.0013 -0.6035 10 6 7.9266 -1.0645 -0.2927 11 6 8.5592 -2.1931 -1.0653 12 1 7.9563 -2.8022 -1.7226 13 6 9.9080 -2.4475 -0.9340 14 7 10.4600 -3.4327 -1.6079 15 14 10.9509 -1.3936 0.2022 16 1 10.9590 -1.9902 1.5621 17 1 12.3401 -1.3297 -0.3185 18 1 10.3828 -0.0231 0.2663 19 6 3.5838 -1.3240 0.0491 20 6 2.0899 -1.1780 0.0005 21 8 1.4158 -2.1854 -0.0401 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5141 0.8898 24 1 -0.3633 0.5135 -0.8902 25 1 2.1399 1.6997 -1.0090 26 1 1.6271 1.9718 0.6697 27 1 3.6101 0.8731 1.5279 28 1 4.1384 2.0564 0.3035 29 1 6.1069 -1.6351 -1.2261 30 1 8.4008 -0.1234 -0.5710 31 1 8.0589 -1.2360 0.7756 32 1 11.4089 -3.6115 -1.5159 33 1 3.8942 -2.1038 -0.6464 34 1 3.8880 -1.5994 1.0589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116850654.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = -105.640488 kcal Electronic energy + Delta-G solvation = -17171.494472 eV Core-core repulsion = 14295.859204 eV Total energy + Delta-G solvation = -2875.635268 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.79521 -40.40882 -37.43958 -36.16927 -35.14657 -34.33692 -30.92298 -29.96926 -28.20692 -25.71903 -24.62611 -23.20412 -21.37817 -19.71444 -19.21910 -18.03768 -17.68037 -17.25306 -16.91051 -16.68783 -16.21348 -15.85143 -15.26377 -15.06448 -14.75323 -14.37409 -14.28201 -13.90321 -13.57764 -13.20653 -13.09604 -12.77485 -12.71156 -12.59484 -12.02459 -11.98350 -11.90714 -11.65071 -11.28997 -10.91533 -10.55090 -9.93562 -9.73727 -8.39231 -6.46644 1.33812 1.36034 1.47908 1.51127 1.66132 2.02666 2.28479 2.40130 2.96337 3.43117 3.60013 3.71672 3.72426 4.19928 4.22808 4.37789 4.50437 4.62009 4.66941 4.73054 4.77544 4.86551 5.00431 5.01688 5.04688 5.21954 5.27193 5.41267 5.50750 6.07999 6.36517 6.54878 6.81723 7.06106 7.15488 7.37051 8.75624 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.045431 B = 0.005062 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.173339 B = 5529.925628 C = 5985.692792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.605 5.605 3 C 0.117 3.883 4 C -0.113 4.113 5 C -0.097 4.097 6 H 0.128 0.872 7 C 0.508 3.492 8 O -0.588 6.588 9 N -0.705 5.705 10 C 0.230 3.770 11 C -0.548 4.548 12 H 0.058 0.942 13 C 0.025 3.975 14 N -0.933 5.933 15 Si 0.939 3.061 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.257 1.257 19 C -0.122 4.122 20 C 0.520 3.480 21 O -0.597 6.597 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.408 0.592 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.272 0.728 33 H 0.110 0.890 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.282 11.576 2.571 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.337 5.337 3 C -0.005 4.005 4 C -0.151 4.151 5 C -0.119 4.119 6 H 0.146 0.854 7 C 0.295 3.705 8 O -0.469 6.469 9 N -0.354 5.354 10 C 0.107 3.893 11 C -0.586 4.586 12 H 0.076 0.924 13 C -0.175 4.175 14 N -0.572 5.572 15 Si 0.763 3.237 16 H -0.191 1.191 17 H -0.200 1.200 18 H -0.181 1.181 19 C -0.162 4.162 20 C 0.309 3.691 21 O -0.479 6.479 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.243 0.757 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.079 11.540 3.051 21.664 hybrid contribution 0.864 -0.428 0.065 0.967 sum -17.215 11.113 3.117 20.726 Atomic orbital electron populations 1.21911 0.78432 1.03863 1.03416 1.47377 1.08496 1.06239 1.71542 1.21652 0.91447 0.83412 1.03958 1.21708 0.94736 0.98878 0.99788 1.21429 0.89220 0.96839 1.04371 0.85424 1.21073 0.89530 0.79975 0.79932 1.90642 1.76441 1.42422 1.37410 1.46102 1.09683 1.33512 1.46081 1.19115 0.79049 0.95914 0.95261 1.21316 0.94840 1.15216 1.27215 0.92420 1.25627 0.99024 0.96026 0.96818 1.69989 1.13135 1.31106 1.42925 0.85834 0.78346 0.80157 0.79401 1.19125 1.19963 1.18119 1.21600 0.90550 0.98437 1.05622 1.20097 0.90634 0.83136 0.75235 1.90692 1.66838 1.37408 1.52976 0.91387 0.90067 0.89917 0.89032 0.87409 0.91343 0.88222 0.75683 0.96599 0.96959 0.91884 0.87171 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.48 127.77 1.34 2.28 16 2 N -0.60 -10.86 3.21 -851.63 -2.73 -13.60 16 3 C 0.12 1.41 6.40 86.49 0.55 1.96 16 4 C -0.11 -2.04 4.71 30.68 0.14 -1.90 16 5 C -0.10 -2.18 2.60 -11.40 -0.03 -2.21 16 6 H 0.13 2.29 8.13 -2.39 -0.02 2.27 16 7 C 0.51 17.09 7.14 87.66 0.63 17.71 16 8 O -0.59 -24.06 15.89 -3.04 -0.05 -24.11 16 9 N -0.70 -26.69 5.45 -466.79 -2.55 -29.23 16 10 C 0.23 10.96 4.50 85.63 0.38 11.35 16 11 C -0.55 -29.89 9.83 25.60 0.25 -29.64 16 12 H 0.06 3.32 7.84 -2.91 -0.02 3.30 16 13 C 0.03 1.42 5.47 84.66 0.46 1.88 16 14 N -0.93 -55.62 13.96 21.45 0.30 -55.32 16 15 Si 0.94 43.48 27.47 68.60 1.88 45.37 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 18 H -0.26 -11.65 6.54 99.48 0.65 -11.00 16 19 C -0.12 -2.88 5.18 29.71 0.15 -2.73 16 20 C 0.52 12.99 7.47 87.71 0.66 13.65 16 21 O -0.60 -19.68 15.95 -3.05 -0.05 -19.72 16 22 H 0.07 1.34 6.59 -2.39 -0.02 1.33 16 23 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.11 0.80 8.10 -2.38 -0.02 0.78 16 27 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 28 H 0.10 1.81 7.89 -2.39 -0.02 1.79 16 29 H 0.41 13.70 8.00 -92.71 -0.74 12.96 16 30 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 31 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 32 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.11 2.57 7.91 -2.39 -0.02 2.55 16 34 H 0.10 2.50 8.09 -2.38 -0.02 2.48 16 Total: -1.00 -72.78 284.65 1.65 -71.13 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.31 Total: 13.13 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 4.54 Total: 12.36 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.98 Total: -98.15 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.10 Total: -43.83 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Total: -72.78 1.65 -71.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116850654.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.514 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds