Wall clock time and date at job start Sun Mar 29 2020 22:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99742 * 2 1 4 4 H 1.48508 * 109.47242 * 240.00204 * 3 2 1 5 5 H 1.48497 * 109.47687 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47138 * 120.00660 * 3 2 1 7 7 C 1.38810 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00128 * 163.07823 * 7 2 1 9 9 N 1.36943 * 119.99662 * 343.07340 * 7 2 1 10 10 C 1.46922 * 120.63360 * 331.84448 * 9 7 2 11 11 C 1.53188 * 108.77930 * 233.58953 * 10 9 7 12 12 C 1.53037 * 109.31250 * 305.36567 * 11 10 9 13 13 N 1.46898 * 109.46098 * 181.38416 * 12 11 10 14 14 C 1.48809 * 111.18594 * 57.63719 * 13 12 11 15 15 C 1.54934 * 103.35220 * 159.50373 * 14 13 12 16 16 C 1.54595 * 102.91995 * 322.69386 * 15 14 13 17 17 H 1.09005 * 110.30861 * 140.87197 * 16 15 14 18 18 O 1.42905 * 110.38967 * 262.99223 * 16 15 14 19 19 C 1.47904 * 111.00189 * 174.97246 * 13 12 11 20 20 C 1.53039 * 109.52470 * 61.37020 * 12 11 10 21 21 C 1.46925 * 120.62716 * 151.82622 * 9 7 2 22 22 H 0.97004 * 119.99940 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.58686 * 113.79742 * 10 9 7 24 24 H 1.09002 * 109.70333 * 353.44999 * 10 9 7 25 25 H 1.08997 * 109.49761 * 185.41091 * 11 10 9 26 26 H 1.09002 * 109.52189 * 65.33277 * 11 10 9 27 27 H 1.09005 * 109.45933 * 301.36063 * 12 11 10 28 28 H 1.09002 * 110.52122 * 41.06853 * 14 13 12 29 29 H 1.09007 * 110.84026 * 278.09232 * 14 13 12 30 30 H 1.09001 * 110.72685 * 204.33091 * 15 14 13 31 31 H 1.09006 * 110.72281 * 81.04458 * 15 14 13 32 32 H 0.96699 * 114.00034 * 295.76605 * 18 16 15 33 33 H 1.08999 * 109.91511 * 94.80046 * 19 13 12 34 34 H 1.08998 * 109.91582 * 333.71138 * 19 13 12 35 35 H 1.09003 * 109.49785 * 58.58534 * 20 12 11 36 36 H 1.09009 * 109.49544 * 178.67427 * 20 12 11 37 37 H 1.08995 * 109.58542 * 246.19619 * 21 9 7 38 38 H 1.09000 * 109.58903 * 6.48380 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3625 0.3442 10 6 0.2260 -2.3410 1.2659 11 6 0.4973 -3.3209 2.4117 12 6 0.8118 -4.7021 1.8325 13 7 1.0400 -5.6523 2.9293 14 6 -0.1395 -5.7228 3.8339 15 6 0.0434 -7.0819 4.5550 16 6 0.6144 -7.9899 3.4416 17 1 1.3820 -8.6489 3.8474 18 8 -0.4304 -8.7577 2.8408 19 6 1.2288 -7.0247 2.4111 20 6 2.0674 -4.6177 0.9615 21 6 1.8138 -3.6527 -0.2009 22 1 -0.4850 0.8401 0.0004 23 1 -0.6771 -2.6410 0.7345 24 1 0.0966 -1.3359 1.6676 25 1 -0.3833 -3.3863 3.0507 26 1 1.3468 -2.9701 2.9976 27 1 -0.0282 -5.0417 1.2266 28 1 -1.0644 -5.7147 3.2571 29 1 -0.1277 -4.9021 4.5511 30 1 -0.9145 -7.4623 4.9097 31 1 0.7518 -6.9894 5.3783 32 1 -0.8547 -9.3838 3.4433 33 1 2.2920 -7.2343 2.2937 34 1 0.7213 -7.1326 1.4525 35 1 2.9022 -4.2544 1.5609 36 1 2.3045 -5.6064 0.5683 37 1 1.0401 -4.0598 -0.8519 38 1 2.7332 -3.5124 -0.7693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118566176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:27 Heat of formation + Delta-G solvation = -24.580850 kcal Electronic energy + Delta-G solvation = -18088.857836 eV Core-core repulsion = 15352.570672 eV Total energy + Delta-G solvation = -2736.287164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50454 -37.30738 -35.45385 -32.86018 -30.84127 -30.15680 -28.56189 -28.03424 -24.68778 -22.42147 -22.21001 -20.68403 -20.36036 -19.04405 -17.36649 -16.74310 -16.07256 -15.41786 -14.74867 -14.02949 -13.77787 -13.47932 -13.41024 -13.23468 -12.91813 -12.74616 -12.34535 -11.82273 -11.74759 -11.55851 -11.12571 -10.95072 -10.79710 -10.69100 -10.61956 -10.24393 -10.18185 -10.07206 -9.84880 -9.46161 -9.38099 -8.41676 -8.18079 -6.61960 -5.74186 -3.16320 3.41899 3.47268 3.49075 3.91904 4.32893 4.54021 4.58587 4.72300 4.94064 5.31288 5.40292 5.48707 5.51451 5.57065 5.68529 5.70129 5.77217 5.96548 5.97074 6.01439 6.04413 6.19088 6.39987 6.48397 6.59321 6.67764 6.73122 6.83872 7.06824 7.12706 7.41103 7.43952 7.50033 7.71085 7.83989 8.50261 9.26347 9.89957 10.47320 11.34575 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053380 B = 0.005382 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.415033 B = 5201.279598 C = 5388.379827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.131 4.131 12 C 0.087 3.913 13 N -0.513 5.513 14 C 0.039 3.961 15 C -0.155 4.155 16 C 0.091 3.909 17 H 0.064 0.936 18 O -0.566 6.566 19 C 0.042 3.958 20 C -0.122 4.122 21 C 0.146 3.854 22 H 0.254 0.746 23 H 0.015 0.985 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.375 0.625 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.015 0.985 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 -14.580 8.346 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.046 3.954 11 C -0.171 4.171 12 C -0.021 4.021 13 N -0.238 5.238 14 C -0.089 4.089 15 C -0.193 4.193 16 C 0.032 3.968 17 H 0.082 0.918 18 O -0.371 6.371 19 C -0.086 4.086 20 C -0.161 4.161 21 C 0.019 3.981 22 H 0.064 0.936 23 H 0.033 0.967 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.222 0.778 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.425 -13.874 8.061 16.052 hybrid contribution -0.508 0.249 0.068 0.569 sum -0.082 -13.625 8.129 15.866 Atomic orbital electron populations 1.70027 1.05280 1.25540 1.54091 1.25037 0.95271 0.98380 1.00979 0.86367 0.78901 0.83356 0.78131 1.20902 1.21672 1.21030 1.19161 0.92532 0.84847 1.41526 0.91746 1.44045 1.35852 1.01555 1.49984 1.20761 0.88571 0.98113 0.87912 1.22287 1.00226 0.94529 1.00019 1.21798 0.97110 0.92677 0.90474 1.65032 1.36591 1.04536 1.17618 1.23167 0.92756 0.96932 0.96011 1.23206 1.01313 0.96507 0.98284 1.22708 0.88851 0.92175 0.93106 0.91844 1.86573 1.52642 1.56169 1.41746 1.22811 1.00643 0.88171 0.97014 1.22060 0.97187 0.98786 0.98086 1.20898 0.97586 0.86898 0.92705 0.93638 0.96700 0.89326 0.93547 0.91890 0.94708 0.93654 0.89934 0.90801 0.90186 0.77771 0.89683 0.92477 0.91544 0.93465 0.96750 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 11.19 55.49 0.62 -26.09 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -15.31 2.99 -172.33 -0.52 -15.82 16 10 C 0.17 4.26 5.30 -3.72 -0.02 4.24 16 11 C -0.13 -2.64 5.20 -26.62 -0.14 -2.78 16 12 C 0.09 1.60 1.62 -67.67 -0.11 1.49 16 13 N -0.51 -8.04 5.11 -222.21 -1.14 -9.18 16 14 C 0.04 0.54 5.32 -1.74 -0.01 0.53 16 15 C -0.15 -1.64 6.81 -24.87 -0.17 -1.81 16 16 C 0.09 1.01 4.35 -25.38 -0.11 0.90 16 17 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 18 O -0.57 -6.37 13.25 -35.23 -0.47 -6.83 16 19 C 0.04 0.58 5.34 -2.76 -0.01 0.56 16 20 C -0.12 -2.27 5.36 -26.61 -0.14 -2.41 16 21 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 22 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 2.42 6.07 -51.93 -0.31 2.11 16 25 H 0.05 0.85 6.83 -51.93 -0.35 0.50 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.03 0.68 7.96 -51.93 -0.41 0.27 16 28 H 0.05 0.67 8.02 -51.93 -0.42 0.25 16 29 H 0.08 1.12 7.65 -51.92 -0.40 0.72 16 30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.38 2.41 9.12 45.56 0.42 2.82 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.88 7.47 -51.93 -0.39 0.49 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.05 0.78 7.31 -51.92 -0.38 0.40 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -31.06 293.40 -8.66 -39.72 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.59 Total: 0.14 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.97 Total: -3.33 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -1.03 Total: -51.09 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.47 Total: -6.83 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.06 -8.66 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118566176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.142 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds