Wall clock time and date at job start Sun Mar 29 2020 22:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99820 * 2 1 4 4 C 1.50697 * 109.47006 * 89.99849 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72165 * 4 3 2 6 6 C 1.37885 * 119.99686 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00035 * 179.72339 * 6 4 3 8 8 Si 1.86803 * 119.99853 * 359.72191 * 6 4 3 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.34769 * 120.00320 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00610 * 180.02562 * 12 2 1 14 14 C 1.50708 * 119.99889 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.46989 * 180.02562 * 14 12 2 16 16 H 1.08996 * 110.43763 * 54.29599 * 15 14 12 17 17 C 1.54631 * 110.48336 * 176.83925 * 15 14 12 18 18 C 1.54690 * 101.67101 * 143.39019 * 17 15 14 19 19 N 1.46767 * 105.53421 * 334.74013 * 18 17 15 20 20 C 1.34421 * 111.29994 * 16.92205 * 19 18 17 21 21 O 1.21284 * 124.94323 * 179.55668 * 20 19 18 22 22 H 1.09002 * 109.46279 * 90.00094 * 1 2 3 23 23 H 1.08997 * 109.47129 * 210.00155 * 1 2 3 24 24 H 1.08996 * 109.46796 * 330.00459 * 1 2 3 25 25 H 1.08998 * 109.47049 * 329.99278 * 3 2 1 26 26 H 1.09001 * 109.46896 * 209.99549 * 3 2 1 27 27 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46543 * 299.99193 * 14 12 2 29 29 H 1.08996 * 109.46850 * 59.99429 * 14 12 2 30 30 H 1.08997 * 110.97137 * 261.59121 * 17 15 14 31 31 H 1.09005 * 110.96996 * 25.35322 * 17 15 14 32 32 H 1.08994 * 110.29968 * 215.68065 * 18 17 15 33 33 H 1.08999 * 110.21065 * 93.75622 * 18 17 15 34 34 H 0.96997 * 124.35478 * 196.94384 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0939 1.0984 2.2417 6 6 3.1269 2.8776 1.6727 7 7 3.3413 3.2601 2.9126 8 14 3.7412 3.9245 0.2528 9 1 2.6924 4.9035 -0.1303 10 1 4.9683 4.6506 0.6679 11 1 4.0513 3.0517 -0.9079 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6351 0.0018 16 1 3.0795 -3.5367 0.8317 17 6 1.6321 -4.9863 0.0817 18 6 2.5069 -5.8822 -0.8266 19 7 3.1754 -4.9649 -1.7570 20 6 3.1240 -3.6968 -1.3139 21 8 3.6049 -2.7413 -1.8854 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6085 2.0284 -0.5139 26 1 3.1500 1.1384 -0.5138 27 1 3.8188 4.0856 3.0898 28 1 0.7586 -2.5298 0.8904 29 1 0.7591 -2.5302 -0.8896 30 1 1.6150 -5.3628 1.1044 31 1 0.6213 -4.8970 -0.3164 32 1 1.8832 -6.5877 -1.3754 33 1 3.2448 -6.4175 -0.2291 34 1 3.5995 -5.2384 -2.5853 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119592729.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:36 Heat of formation + Delta-G solvation = -65.547093 kcal Electronic energy + Delta-G solvation = -17550.259592 eV Core-core repulsion = 14676.362904 eV Total energy + Delta-G solvation = -2873.896688 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.41027 -38.53607 -36.15201 -34.74483 -32.92007 -32.32711 -29.32171 -28.14570 -26.07329 -25.23605 -22.20005 -21.91871 -19.83066 -18.21403 -17.23588 -16.89963 -16.58213 -16.02582 -15.29653 -14.85875 -14.43319 -13.99344 -13.57601 -13.49917 -13.02630 -12.67161 -12.35424 -12.34924 -12.22231 -11.84362 -11.67138 -11.51202 -11.28666 -10.95773 -10.79067 -10.41412 -9.99639 -9.50937 -9.40528 -9.07049 -8.74812 -8.51014 -7.50957 -6.01238 -3.98755 2.87097 3.34004 3.38938 3.42157 3.50074 3.60590 3.95208 4.35097 4.45342 4.48531 4.65847 4.95432 5.19340 5.27649 5.31991 5.40644 5.48966 5.55700 5.66136 5.73671 5.85042 5.95367 6.10396 6.23576 6.79087 6.90243 7.07892 7.14537 7.51258 7.71735 8.42782 8.49200 8.57224 9.01680 9.21620 9.60620 11.12297 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.039053 B = 0.006022 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.808514 B = 4648.356206 C = 4860.663572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.604 5.604 3 C 0.216 3.784 4 C -0.525 4.525 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.263 1.263 12 C 0.504 3.496 13 O -0.515 6.515 14 C -0.122 4.122 15 C -0.109 4.109 16 H 0.117 0.883 17 C -0.131 4.131 18 C 0.104 3.896 19 N -0.745 5.745 20 C 0.518 3.482 21 O -0.494 6.494 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.042 0.958 27 H 0.263 0.737 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 -18.438 -7.043 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.337 5.337 3 C 0.095 3.905 4 C -0.563 4.563 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.187 1.187 12 C 0.289 3.711 13 O -0.390 6.390 14 C -0.163 4.163 15 C -0.131 4.131 16 H 0.134 0.866 17 C -0.169 4.169 18 C -0.021 4.021 19 N -0.404 5.404 20 C 0.302 3.698 21 O -0.366 6.366 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.938 -17.690 -7.136 20.297 hybrid contribution 0.376 0.450 -0.845 1.029 sum -6.561 -17.239 -7.981 20.098 Atomic orbital electron populations 1.21621 0.81394 1.02736 1.00159 1.47769 1.05927 1.07138 1.72916 1.19619 0.92634 0.80093 0.98111 1.21361 1.36524 1.07040 0.91388 0.90846 1.24853 0.95300 0.97380 0.95546 1.69902 1.41877 1.23532 1.18652 0.86866 0.78851 0.80726 0.83478 1.20163 1.20998 1.18723 1.20129 0.88271 0.84835 0.77818 1.90713 1.13547 1.86812 1.47928 1.21559 0.98154 0.92641 1.03901 1.21733 0.98319 0.94635 0.98384 0.86550 1.22747 0.99111 0.94015 1.00984 1.22005 0.95715 0.92498 0.91859 1.46268 1.60244 1.08645 1.25223 1.20784 0.79686 0.82403 0.86885 1.90848 1.46058 1.38344 1.61315 0.94011 0.92325 0.90754 0.95954 0.94035 0.92678 0.88429 0.89579 0.89030 0.89859 0.90641 0.91368 0.75648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.24 59.85 0.61 1.98 16 2 N -0.60 -13.28 2.86 -182.95 -0.52 -13.80 16 3 C 0.22 5.66 4.23 -5.19 -0.02 5.64 16 4 C -0.52 -15.69 9.94 -34.44 -0.34 -16.03 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -28.56 13.96 55.43 0.77 -27.78 16 8 Si 0.87 22.57 27.47 -169.99 -4.67 17.90 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 12 C 0.50 10.92 7.13 -10.98 -0.08 10.84 16 13 O -0.52 -13.64 13.44 -16.81 -0.23 -13.87 16 14 C -0.12 -1.77 3.66 -27.88 -0.10 -1.88 16 15 C -0.11 -1.46 2.55 -90.63 -0.23 -1.69 16 16 H 0.12 1.73 7.96 -51.93 -0.41 1.32 16 17 C -0.13 -1.01 6.72 -24.98 -0.17 -1.18 16 18 C 0.10 0.74 7.79 -3.01 -0.02 0.72 16 19 N -0.75 -8.12 6.24 -59.08 -0.37 -8.49 16 20 C 0.52 8.27 7.70 -10.86 -0.08 8.19 16 21 O -0.49 -10.76 15.39 -16.81 -0.26 -11.02 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 24 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 25 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 26 H 0.04 1.20 6.47 -51.93 -0.34 0.86 16 27 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 28 H 0.10 1.16 7.40 -51.93 -0.38 0.77 16 29 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.54 7.91 -51.93 -0.41 0.13 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.41 3.78 8.96 -40.82 -0.37 3.42 16 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -39.36 283.29 -6.29 -45.65 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -4.76 Total: -1.49 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.53 Total: 8.63 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.12 Total: -50.08 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.48 Total: -24.89 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -39.36 -6.29 -45.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119592729.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.895 kcal (2) G-P(sol) polarization free energy of solvation -39.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds