Wall clock time and date at job start Sun Mar 29 2020 22:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48503 * 109.47276 * 239.99768 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00098 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99544 * 180.02562 * 14 12 11 16 16 H 1.09002 * 112.85704 * 334.66474 * 15 14 12 17 17 C 1.53779 * 113.61606 * 105.86763 * 15 14 12 18 18 C 1.54051 * 86.98859 * 89.15736 * 17 15 14 19 19 H 1.09000 * 113.61102 * 270.88271 * 18 17 15 20 20 C 1.53001 * 113.69595 * 139.99460 * 18 17 15 21 21 N 1.46895 * 109.47690 * 87.46377 * 20 18 17 22 22 C 1.53781 * 87.07715 * 25.43374 * 18 17 15 23 23 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46894 * 60.00093 * 9 7 2 25 25 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 26 26 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 27 27 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 28 28 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 29 29 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 30 30 H 0.96994 * 119.99756 * 0.02562 * 14 12 11 31 31 H 1.09005 * 113.61317 * 203.66042 * 17 15 14 32 32 H 1.08997 * 113.61401 * 334.55969 * 17 15 14 33 33 H 1.09006 * 109.47051 * 207.46948 * 20 18 17 34 34 H 1.09007 * 109.46837 * 327.46365 * 20 18 17 35 35 H 1.00897 * 111.00328 * 180.02562 * 21 20 18 36 36 H 1.00900 * 111.00189 * 303.95934 * 21 20 18 37 37 H 1.08998 * 113.61281 * 220.02184 * 22 18 17 38 38 H 1.08995 * 113.61565 * 89.11879 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4592 -6.1327 -0.0005 13 8 3.6516 -5.9111 -0.0009 14 7 2.0098 -7.4033 -0.0006 15 6 2.9618 -8.5168 -0.0007 16 1 3.9270 -8.2487 -0.4304 17 6 3.0693 -9.2355 1.3546 18 6 1.9236 -10.1450 0.8713 19 1 0.9316 -9.7615 1.1098 20 6 2.1010 -11.6149 1.2571 21 7 1.5303 -11.8434 2.5912 22 6 2.3797 -9.8249 -0.5620 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5570 0.8896 26 1 2.8717 -3.6045 0.8895 27 1 2.8717 -3.6044 -0.8906 28 1 0.8530 -5.0450 -0.8897 29 1 0.8535 -5.0446 0.8903 30 1 1.0562 -7.5804 -0.0007 31 1 4.0137 -9.7610 1.4965 32 1 2.8014 -8.6075 2.2042 33 1 1.5893 -12.2456 0.5301 34 1 3.1626 -11.8619 1.2689 35 1 1.6354 -12.8076 2.8692 36 1 1.9435 -11.2239 3.2722 37 1 1.5553 -9.6724 -1.2587 38 1 3.1358 -10.5112 -0.9432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122308677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:34 Heat of formation + Delta-G solvation = -44.137463 kcal Electronic energy + Delta-G solvation = -16622.882660 eV Core-core repulsion = 13885.747458 eV Total energy + Delta-G solvation = -2737.135202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28339 -38.47179 -34.71031 -34.12867 -32.72330 -31.88519 -28.07017 -26.64183 -25.92561 -23.91931 -22.24986 -20.92916 -19.73507 -19.32367 -16.94131 -16.40185 -16.07358 -15.96461 -15.37128 -15.25418 -14.48558 -14.33611 -13.81376 -13.67709 -13.21738 -13.04318 -12.69194 -12.23372 -12.00440 -11.78398 -11.31551 -11.20185 -10.76896 -10.71198 -10.59745 -10.53080 -10.36669 -9.66896 -9.64541 -9.24212 -9.09186 -9.00243 -8.96762 -8.29558 -5.95450 -3.96816 2.92458 3.26225 3.38187 3.41475 3.45498 4.05819 4.24204 4.44028 4.51173 4.63432 4.69871 5.04579 5.15048 5.23579 5.38754 5.40495 5.42660 5.48137 5.69809 5.74535 5.76155 5.79993 5.86524 6.03535 6.30200 6.60588 6.74849 6.75708 6.96274 7.03713 7.19177 7.63615 7.73556 7.86611 8.05411 8.48069 8.50067 9.10122 9.66923 11.16073 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060753 B = 0.003314 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.770869 B = 8448.238536 C = 8585.411585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.515 3.485 13 O -0.537 6.537 14 N -0.722 5.722 15 C 0.123 3.877 16 H 0.099 0.901 17 C -0.152 4.152 18 C -0.110 4.110 19 H 0.098 0.902 20 C 0.071 3.929 21 N -0.852 5.852 22 C -0.141 4.141 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.400 0.600 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.339 0.661 36 H 0.342 0.658 37 H 0.075 0.925 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 -23.758 1.599 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.303 3.697 13 O -0.413 6.413 14 N -0.375 5.375 15 C 0.016 3.984 16 H 0.117 0.883 17 C -0.191 4.191 18 C -0.128 4.128 19 H 0.116 0.884 20 C -0.060 4.060 21 N -0.381 5.381 22 C -0.180 4.180 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.234 0.766 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.201 -23.234 1.255 23.372 hybrid contribution 0.888 0.481 0.314 1.058 sum 3.089 -22.753 1.569 23.015 Atomic orbital electron populations 1.69956 1.06037 1.26634 1.51151 1.25022 0.94859 0.99235 0.95396 0.86649 0.79568 0.83066 0.78677 1.20229 1.21334 1.20239 1.21246 0.93159 0.91051 1.50240 0.92635 1.19126 0.93966 0.91442 0.97118 1.21444 0.98631 0.91551 1.01664 1.21852 0.98145 0.94068 1.03786 1.21298 0.90405 0.83690 0.74299 1.90669 1.17396 1.84670 1.48568 1.45834 1.09534 1.05279 1.76843 1.21685 0.94376 0.85829 0.96470 0.88302 1.23577 0.98555 0.98496 0.98503 1.22700 0.99648 0.94418 0.96071 0.88377 1.21784 0.96668 0.96298 0.91251 1.58717 1.65104 1.09956 1.04336 1.23331 1.01380 0.96795 0.96498 0.93018 0.96601 0.96614 0.92736 0.92716 0.89334 0.89333 0.76592 0.89712 0.90940 0.91054 0.95436 0.84862 0.84600 0.90662 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 11 C -0.14 -2.32 5.70 -27.88 -0.16 -2.48 16 12 C 0.51 8.37 7.83 -10.98 -0.09 8.28 16 13 O -0.54 -10.91 15.60 5.56 0.09 -10.82 16 14 N -0.72 -8.57 5.26 -53.01 -0.28 -8.85 16 15 C 0.12 1.30 4.30 -67.12 -0.29 1.01 16 16 H 0.10 1.25 7.50 -51.93 -0.39 0.86 16 17 C -0.15 -1.39 7.45 -25.78 -0.19 -1.58 16 18 C -0.11 -0.84 3.79 -89.67 -0.34 -1.18 16 19 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 20 C 0.07 0.48 6.63 -3.83 -0.03 0.45 16 21 N -0.85 -5.81 9.62 -10.37 -0.10 -5.91 16 22 C -0.14 -1.08 7.38 -25.91 -0.19 -1.27 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.40 3.72 8.70 -40.82 -0.36 3.36 16 31 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.18 7.85 -51.93 -0.41 -0.23 16 35 H 0.34 1.76 9.08 -39.29 -0.36 1.40 16 36 H 0.34 2.20 8.99 -39.29 -0.35 1.84 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -33.47 317.21 -8.20 -41.67 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.46 Total: 1.08 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.95 Total: -12.53 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.36 Total: -41.38 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.47 -8.20 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122308677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.463 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds