Wall clock time and date at job start Sun Mar 29 2020 22:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48503 * 109.47276 * 239.99768 * 3 2 1 5 5 H 1.48496 * 109.47302 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00098 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99544 * 180.02562 * 14 12 11 16 16 H 1.09002 * 112.85704 * 334.66474 * 15 14 12 17 17 C 1.53779 * 113.61606 * 105.86763 * 15 14 12 18 18 C 1.54051 * 86.98859 * 89.15736 * 17 15 14 19 19 H 1.09000 * 113.61102 * 270.88271 * 18 17 15 20 20 C 1.53001 * 113.69595 * 139.99460 * 18 17 15 21 21 N 1.46895 * 109.47690 * 87.46377 * 20 18 17 22 22 C 1.53781 * 87.07715 * 25.43374 * 18 17 15 23 23 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46894 * 60.00093 * 9 7 2 25 25 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 26 26 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 27 27 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 28 28 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 29 29 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 30 30 H 0.96994 * 119.99756 * 0.02562 * 14 12 11 31 31 H 1.09005 * 113.61317 * 203.66042 * 17 15 14 32 32 H 1.08997 * 113.61401 * 334.55969 * 17 15 14 33 33 H 1.09006 * 109.47051 * 207.46948 * 20 18 17 34 34 H 1.09007 * 109.46837 * 327.46365 * 20 18 17 35 35 H 1.00897 * 111.00328 * 180.02562 * 21 20 18 36 36 H 1.00900 * 111.00189 * 303.95934 * 21 20 18 37 37 H 1.08998 * 113.61281 * 220.02184 * 22 18 17 38 38 H 1.08995 * 113.61565 * 89.11879 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4592 -6.1327 -0.0005 13 8 3.6516 -5.9111 -0.0009 14 7 2.0098 -7.4033 -0.0006 15 6 2.9618 -8.5168 -0.0007 16 1 3.9270 -8.2487 -0.4304 17 6 3.0693 -9.2355 1.3546 18 6 1.9236 -10.1450 0.8713 19 1 0.9316 -9.7615 1.1098 20 6 2.1010 -11.6149 1.2571 21 7 1.5303 -11.8434 2.5912 22 6 2.3797 -9.8249 -0.5620 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5570 0.8896 26 1 2.8717 -3.6045 0.8895 27 1 2.8717 -3.6044 -0.8906 28 1 0.8530 -5.0450 -0.8897 29 1 0.8535 -5.0446 0.8903 30 1 1.0562 -7.5804 -0.0007 31 1 4.0137 -9.7610 1.4965 32 1 2.8014 -8.6075 2.2042 33 1 1.5893 -12.2456 0.5301 34 1 3.1626 -11.8619 1.2689 35 1 1.6354 -12.8076 2.8692 36 1 1.9435 -11.2239 3.2722 37 1 1.5553 -9.6724 -1.2587 38 1 3.1358 -10.5112 -0.9432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122308677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:34 Heat of formation + Delta-G solvation = -68.689051 kcal Electronic energy + Delta-G solvation = -16623.947297 eV Core-core repulsion = 13885.747458 eV Total energy + Delta-G solvation = -2738.199839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.27784 -39.55335 -36.13680 -35.40970 -34.09690 -33.48767 -29.81009 -27.51808 -26.63481 -25.73561 -23.11798 -22.41987 -21.28124 -20.14096 -18.61273 -17.87295 -17.06407 -16.81950 -16.62878 -16.47587 -16.10905 -15.18948 -15.05237 -14.89124 -14.25639 -14.11121 -14.00305 -13.70397 -13.40962 -13.11437 -12.73277 -12.58171 -12.51046 -12.42221 -11.85300 -11.55847 -11.48670 -11.43769 -11.27868 -11.08613 -10.75307 -10.54175 -10.01662 -9.58345 -8.20259 -6.30398 1.39443 1.42490 1.50632 1.63900 2.18816 2.42134 3.12586 3.47543 3.53957 3.82785 3.85660 3.94160 4.08266 4.22896 4.27461 4.46526 4.62524 4.73332 4.77734 4.81067 4.89976 4.93003 4.97246 5.08104 5.11097 5.17744 5.19466 5.32879 5.53527 5.67814 5.75498 5.86901 6.27323 6.27559 6.57132 6.60297 6.84951 7.28890 7.38218 8.91158 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060753 B = 0.003314 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.770869 B = 8448.238536 C = 8585.411585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.518 3.482 13 O -0.585 6.585 14 N -0.702 5.702 15 C 0.105 3.895 16 H 0.076 0.924 17 C -0.148 4.148 18 C -0.099 4.099 19 H 0.093 0.907 20 C 0.072 3.928 21 N -0.862 5.862 22 C -0.125 4.125 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.415 0.585 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.348 0.652 36 H 0.343 0.657 37 H 0.084 0.916 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -24.949 1.501 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.306 3.694 13 O -0.465 6.465 14 N -0.354 5.354 15 C -0.001 4.001 16 H 0.095 0.905 17 C -0.187 4.187 18 C -0.117 4.117 19 H 0.111 0.889 20 C -0.058 4.058 21 N -0.392 5.392 22 C -0.163 4.163 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.253 0.747 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.102 0.898 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.002 -24.482 1.159 24.591 hybrid contribution 0.915 0.803 0.357 1.268 sum 2.917 -23.679 1.517 23.906 Atomic orbital electron populations 1.70062 1.07515 1.27883 1.51495 1.25916 0.95839 1.03090 0.94648 0.85550 0.78393 0.78346 0.79068 1.19398 1.20298 1.19439 1.21679 0.93353 0.92861 1.50889 0.93068 1.19013 0.94188 0.92352 0.95529 1.21158 0.97628 0.93035 1.00230 1.21686 0.97923 0.91675 1.05757 1.21080 0.89369 0.84872 0.74096 1.90655 1.19101 1.85474 1.51246 1.45605 1.10730 1.04248 1.74787 1.21911 0.93505 0.86397 0.98274 0.90542 1.23560 0.99840 0.98437 0.96869 1.22592 0.98596 0.94806 0.95734 0.88891 1.21760 0.97208 0.95464 0.91387 1.58725 1.65293 1.10741 1.04472 1.23285 1.01758 0.94625 0.96657 0.92624 0.98026 0.98094 0.94209 0.94111 0.87295 0.87433 0.74743 0.88726 0.92436 0.90491 0.94747 0.83852 0.84491 0.89784 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.55 -32.76 9.11 25.60 0.23 -32.53 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.08 -3.69 4.44 30.59 0.14 -3.55 16 11 C -0.13 -4.29 5.70 29.85 0.17 -4.12 16 12 C 0.52 16.63 7.83 87.66 0.69 17.31 16 13 O -0.58 -24.18 15.60 -3.02 -0.05 -24.23 16 14 N -0.70 -15.76 5.26 -440.03 -2.32 -18.07 16 15 C 0.10 2.10 4.30 45.52 0.20 2.30 16 16 H 0.08 1.92 7.50 -2.39 -0.02 1.90 16 17 C -0.15 -2.51 7.45 31.21 0.23 -2.28 16 18 C -0.10 -1.28 3.79 -10.18 -0.04 -1.32 16 19 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 20 C 0.07 0.80 6.63 86.30 0.57 1.37 16 21 N -0.86 -10.04 9.62 -186.71 -1.80 -11.84 16 22 C -0.12 -1.59 7.38 31.12 0.23 -1.36 16 23 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 27 H 0.04 1.90 8.10 -2.38 -0.02 1.88 16 28 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.42 6.80 8.70 -92.71 -0.81 6.00 16 31 H 0.09 1.42 7.91 -2.38 -0.02 1.40 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.03 0.34 7.85 -2.38 -0.02 0.33 16 35 H 0.35 2.94 9.08 -89.70 -0.81 2.13 16 36 H 0.34 3.85 8.99 -89.69 -0.81 3.04 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.11 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -72.66 317.21 -0.19 -72.85 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -1.37 Total: 12.32 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 3.03 Total: -21.97 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -3.83 Total: -86.54 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.66 -0.19 -72.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122308677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.160 kcal (2) G-P(sol) polarization free energy of solvation -72.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds