Wall clock time and date at job start Sun Mar 29 2020 22:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 C 1.53000 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47235 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47381 * 180.02562 * 5 4 3 7 7 O 1.20829 * 120.00052 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00118 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00194 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46758 * 29.99742 * 9 8 6 11 11 C 1.50697 * 109.47323 * 150.00089 * 9 8 6 12 12 H 1.08001 * 120.00051 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99978 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00232 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99946 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46920 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46879 * 119.99993 * 15 13 11 18 18 H 1.48500 * 109.47202 * 239.99949 * 15 13 11 19 19 C 1.53003 * 109.46851 * 269.99901 * 9 8 6 20 20 C 1.53001 * 117.51964 * 356.28317 * 19 9 8 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 9 22 22 H 1.09002 * 109.46953 * 59.99657 * 1 2 3 23 23 H 1.08998 * 109.47337 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47334 * 299.99950 * 1 2 3 25 25 H 1.09001 * 109.46832 * 239.99885 * 2 1 3 26 26 H 1.09002 * 109.46953 * 120.00343 * 2 1 3 27 27 H 1.09001 * 109.47310 * 60.00178 * 3 2 1 28 28 H 1.08993 * 109.47298 * 300.00039 * 3 2 1 29 29 H 1.09001 * 109.47233 * 60.00267 * 4 3 2 30 30 H 1.09004 * 109.47064 * 299.99919 * 4 3 2 31 31 H 1.09001 * 109.46835 * 59.99971 * 5 4 3 32 32 H 1.09002 * 109.47260 * 300.00382 * 5 4 3 33 33 H 0.97001 * 120.00567 * 179.97438 * 14 13 11 34 34 H 1.09002 * 115.54973 * 210.58100 * 19 9 8 35 35 H 1.09001 * 117.49733 * 214.97413 * 20 19 9 36 36 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 37 37 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 38 38 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.5870 2.8848 0.0013 7 8 6.1912 1.8384 0.0013 8 8 6.2582 4.0473 0.0023 9 6 7.7083 3.9713 0.0017 10 1 8.0243 3.0640 -0.5133 11 6 8.2741 5.1745 -0.7076 12 1 7.6103 5.9215 -1.1173 13 6 9.6391 5.3213 -0.8343 14 7 10.4474 4.4115 -0.3359 15 14 10.3404 6.8125 -1.7141 16 1 9.2291 7.6804 -2.1798 17 1 11.2074 7.5755 -0.7806 18 1 11.1423 6.3665 -2.8818 19 6 8.2181 3.9430 1.4440 20 6 7.1835 4.0841 2.5624 21 6 7.8474 2.7307 2.3007 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.9284 -0.8891 30 1 3.9329 0.9287 0.8909 31 1 3.7164 3.3984 0.8913 32 1 3.7171 3.3990 -0.8887 33 1 11.4078 4.5145 -0.4254 34 1 9.1979 4.3925 1.6052 35 1 7.4828 4.6264 3.4593 36 1 6.1395 4.1975 2.2707 37 1 7.2400 1.9534 1.8368 38 1 8.5834 2.3826 3.0254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123370397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:21 Heat of formation + Delta-G solvation = -94.572166 kcal Electronic energy + Delta-G solvation = -17406.839621 eV Core-core repulsion = 14635.224655 eV Total energy + Delta-G solvation = -2771.614966 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75749 -36.83463 -35.81026 -34.66017 -32.80504 -32.20247 -28.26038 -27.05139 -23.55977 -22.59649 -21.44053 -21.07155 -20.14085 -18.89837 -16.94007 -16.56846 -16.19093 -15.52609 -15.20230 -14.56414 -14.16234 -13.74717 -13.54488 -13.25626 -12.80469 -12.45005 -11.98346 -11.83061 -11.44705 -11.33162 -11.17593 -10.99789 -10.97980 -10.95623 -10.81910 -10.57590 -10.49336 -10.28882 -10.02701 -9.60231 -9.45901 -9.09973 -8.51946 -8.43716 -6.18083 -4.25243 3.03020 3.23863 3.30864 3.35434 3.68948 4.33714 4.75843 4.84406 4.93244 4.99532 5.14011 5.19727 5.23035 5.49792 5.53666 5.67477 5.70287 5.78418 5.86445 5.92597 5.95625 5.98366 6.11654 6.14161 6.16897 6.29517 6.40845 6.45432 6.70937 6.93001 7.02814 7.21797 7.58381 7.62203 7.86454 8.14285 8.65438 8.90613 9.39401 10.89110 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.004913 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.652185 B = 5697.701781 C = 6089.713124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.108 4.108 5 C -0.117 4.117 6 C 0.449 3.551 7 O -0.519 6.519 8 O -0.354 6.354 9 C 0.247 3.753 10 H 0.052 0.948 11 C -0.518 4.518 12 H 0.070 0.930 13 C 0.063 3.937 14 N -0.884 5.884 15 Si 0.909 3.091 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.114 4.114 20 C -0.196 4.196 21 C -0.208 4.208 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.265 0.735 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 -4.232 1.949 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.146 4.146 5 C -0.155 4.155 6 C 0.292 3.708 7 O -0.409 6.409 8 O -0.270 6.270 9 C 0.194 3.806 10 H 0.069 0.931 11 C -0.556 4.556 12 H 0.088 0.912 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.736 3.264 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.132 4.132 20 C -0.233 4.233 21 C -0.245 4.245 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.809 -4.553 1.966 14.672 hybrid contribution 0.662 0.664 -0.274 0.977 sum -13.146 -3.889 1.693 13.814 Atomic orbital electron populations 1.21780 0.96084 1.01391 1.01712 1.21527 0.95548 0.97025 1.02236 1.21625 0.95131 0.96825 1.02120 1.21417 0.94588 0.94841 1.03724 1.21373 0.89510 0.99546 1.05046 1.23464 0.91433 0.83119 0.72800 1.90569 1.70758 1.33523 1.46052 1.86498 1.26254 1.32630 1.81640 1.20129 0.69442 0.99324 0.91698 0.93085 1.21003 0.91644 1.06826 1.36144 0.91158 1.24915 0.96422 0.97050 0.95564 1.70007 1.03705 1.33930 1.44532 0.86263 0.79005 0.81951 0.79195 1.19448 1.20734 1.20772 1.23005 0.99682 0.98451 0.92098 1.22792 0.98739 1.00686 1.01102 1.23136 1.04173 0.92293 1.04873 0.92818 0.92966 0.92823 0.91949 0.91963 0.91910 0.91875 0.91116 0.91163 0.88547 0.88422 0.92490 0.85593 0.90433 0.89966 0.88628 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.13 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.12 -1.18 5.21 -26.73 -0.14 -1.31 16 4 C -0.11 -1.38 4.50 -26.73 -0.12 -1.50 16 5 C -0.12 -1.67 5.81 -27.88 -0.16 -1.83 16 6 C 0.45 9.14 6.81 36.00 0.25 9.39 16 7 O -0.52 -11.89 12.93 -18.75 -0.24 -12.13 16 8 O -0.35 -8.32 8.49 -39.25 -0.33 -8.65 16 9 C 0.25 6.57 2.39 -27.88 -0.07 6.51 16 10 H 0.05 1.52 7.16 -51.93 -0.37 1.15 16 11 C -0.52 -14.49 8.90 -34.44 -0.31 -14.79 16 12 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 13 C 0.06 1.73 5.16 -17.82 -0.09 1.64 16 14 N -0.88 -25.06 11.66 55.43 0.65 -24.42 16 15 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.11 -2.84 5.23 -90.61 -0.47 -3.32 16 20 C -0.20 -4.16 9.74 -26.73 -0.26 -4.42 16 21 C -0.21 -4.62 9.87 -26.73 -0.26 -4.88 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 30 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.13 3.42 6.55 -51.93 -0.34 3.08 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.69 6.67 -51.93 -0.35 1.34 16 37 H 0.10 2.20 5.56 -51.93 -0.29 1.91 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -29.74 311.22 -8.07 -37.81 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.38 Total: 3.39 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -1.43 Total: -16.66 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.65 Total: -24.42 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.58 Total: -20.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.74 -8.07 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.761 kcal (2) G-P(sol) polarization free energy of solvation -29.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds