Wall clock time and date at job start Sun Mar 29 2020 22:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.53005 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47006 * 55.00082 * 4 3 2 6 6 C 1.53002 * 109.46847 * 294.99646 * 4 3 2 7 7 C 1.50700 * 109.46668 * 175.00199 * 4 3 2 8 8 O 1.20823 * 120.00658 * 359.97438 * 7 4 3 9 9 O 1.34238 * 119.99613 * 179.97438 * 7 4 3 10 10 C 1.45204 * 116.99974 * 179.97438 * 9 7 4 11 11 H 1.08997 * 109.46844 * 330.00317 * 10 9 7 12 12 C 1.50702 * 109.47064 * 210.00105 * 10 9 7 13 13 H 1.08003 * 119.99700 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99831 * 179.97438 * 12 10 9 15 15 N 1.31514 * 120.00337 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99905 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47052 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47073 * 120.00271 * 16 14 12 19 19 H 1.48502 * 109.46904 * 240.00050 * 16 14 12 20 20 C 1.52996 * 109.46855 * 90.00152 * 10 9 7 21 21 C 1.53002 * 117.49888 * 231.25352 * 20 10 9 22 22 C 1.53000 * 117.50107 * 299.91114 * 20 10 9 23 23 H 1.08993 * 109.47323 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46753 * 300.00341 * 1 2 3 25 25 H 1.09004 * 109.47137 * 59.99484 * 1 2 3 26 26 H 1.08997 * 109.46931 * 240.00205 * 2 1 3 27 27 H 1.08997 * 109.47438 * 120.00217 * 2 1 3 28 28 H 1.08997 * 109.47574 * 60.00184 * 3 2 1 29 29 H 1.09007 * 109.47284 * 299.99813 * 3 2 1 30 30 H 1.08996 * 109.46580 * 60.00820 * 6 4 3 31 31 H 1.09002 * 109.46756 * 179.97438 * 6 4 3 32 32 H 1.08997 * 109.47262 * 300.00374 * 6 4 3 33 33 H 0.96991 * 120.00328 * 179.97438 * 15 14 12 34 34 H 1.09002 * 115.54951 * 85.58326 * 20 10 9 35 35 H 1.09000 * 117.49996 * 215.00804 * 21 20 10 36 36 H 1.08999 * 117.49664 * 0.02562 * 21 20 10 37 37 H 1.09008 * 117.49673 * 359.97438 * 22 20 10 38 38 H 1.08999 * 117.49959 * 144.99502 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0805 0.8327 1.3065 7 6 4.0723 2.8579 -0.1244 8 8 3.2872 3.7728 -0.2044 9 8 5.3920 3.1023 -0.1458 10 6 5.8037 4.4894 -0.2677 11 1 5.0533 5.0428 -0.8322 12 6 7.1262 4.5595 -0.9869 13 1 7.6087 3.6524 -1.3195 14 6 7.7194 5.7818 -1.2212 15 7 7.1316 6.8865 -0.8166 16 14 9.3583 5.8689 -2.1134 17 1 9.8064 4.4963 -2.4606 18 1 9.2042 6.6687 -3.3550 19 1 10.3676 6.5107 -1.2332 20 6 5.9482 5.1028 1.1264 21 6 5.2269 6.4252 1.3946 22 6 4.7059 5.1285 2.0192 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9564 -0.8900 30 1 3.7173 -0.1911 1.3959 31 1 5.1705 0.8322 1.3058 32 1 3.7175 1.4220 2.1485 33 1 7.5491 7.7464 -0.9811 34 1 6.9126 4.9484 1.6104 35 1 5.7169 7.1409 2.0549 36 1 4.6492 6.8580 0.5779 37 1 3.7855 4.7088 1.6131 38 1 4.8531 4.9909 3.0904 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:32 Heat of formation + Delta-G solvation = -105.741635 kcal Electronic energy + Delta-G solvation = -17871.381470 eV Core-core repulsion = 15099.282159 eV Total energy + Delta-G solvation = -2772.099311 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49418 -38.55707 -37.00311 -36.58826 -34.71888 -32.92696 -29.87841 -27.51925 -25.90789 -24.69256 -23.09492 -22.37306 -21.34186 -20.67610 -18.84521 -18.30339 -17.48208 -16.92501 -16.44404 -16.09460 -15.74950 -14.98790 -14.92915 -14.48598 -14.04586 -13.70716 -13.35227 -13.20657 -13.07247 -12.96887 -12.81109 -12.71196 -12.33234 -12.18333 -12.11781 -11.85956 -11.80311 -11.70484 -11.43325 -11.31462 -11.08131 -10.90305 -10.60248 -10.43847 -8.22183 -6.39322 1.40551 1.41862 1.42738 1.55300 2.05480 2.43652 3.05150 3.21491 3.74376 3.89716 3.95793 4.09666 4.28964 4.30096 4.36494 4.37865 4.43338 4.62149 4.75693 4.78269 4.83691 4.88900 4.96881 5.05061 5.09704 5.14491 5.24045 5.25446 5.33735 5.38295 5.44989 5.48585 5.53238 5.57837 5.87023 6.18041 6.64917 7.05449 7.31446 8.84369 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.033328 B = 0.006018 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.924901 B = 4651.719963 C = 5051.447067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.080 4.080 5 H 0.119 0.881 6 C -0.138 4.138 7 C 0.446 3.554 8 O -0.551 6.551 9 O -0.361 6.361 10 C 0.252 3.748 11 H 0.004 0.996 12 C -0.556 4.556 13 H 0.063 0.937 14 C 0.025 3.975 15 N -0.896 5.896 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.273 1.273 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.198 4.198 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.267 0.733 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 -12.267 3.955 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.099 4.099 5 H 0.137 0.863 6 C -0.195 4.195 7 C 0.292 3.708 8 O -0.442 6.442 9 O -0.277 6.277 10 C 0.199 3.801 11 H 0.021 0.979 12 C -0.593 4.593 13 H 0.081 0.919 14 C -0.177 4.177 15 N -0.532 5.532 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.199 1.199 20 C -0.150 4.150 21 C -0.161 4.161 22 C -0.235 4.235 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.586 -11.765 3.939 14.542 hybrid contribution 0.777 0.979 -0.629 1.399 sum -6.809 -10.786 3.311 13.178 Atomic orbital electron populations 1.21771 0.95261 1.02320 1.01645 1.21569 0.96341 0.94183 1.03441 1.21485 0.91056 0.98863 1.02285 1.21234 0.97594 0.87800 1.03263 0.86335 1.21788 1.01760 1.02287 0.93621 1.24669 0.81134 0.93829 0.71184 1.90536 1.57592 1.48606 1.47505 1.86478 1.25122 1.34359 1.81726 1.19821 0.94283 0.74024 0.91989 0.97860 1.21221 1.05226 0.93866 1.39011 0.91877 1.25726 1.01511 0.94558 0.95903 1.70169 1.39696 0.98079 1.45231 0.85262 0.78378 0.78449 0.78051 1.19006 1.20302 1.19868 1.22397 0.94422 1.01786 0.96358 1.22280 1.02502 0.90328 1.01031 1.23258 0.98298 1.03141 0.98798 0.91162 0.92906 0.93347 0.90940 0.89978 0.92210 0.92952 0.87792 0.92112 0.92780 0.92416 0.90203 0.89224 0.91860 0.89717 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.04 5.69 30.59 0.17 -1.87 16 3 C -0.10 -2.51 4.03 30.60 0.12 -2.39 16 4 C -0.08 -2.29 2.83 -11.54 -0.03 -2.33 16 5 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 6 C -0.14 -3.24 8.88 71.98 0.64 -2.60 16 7 C 0.45 18.81 6.48 71.24 0.46 19.27 16 8 O -0.55 -26.37 12.96 21.97 0.28 -26.09 16 9 O -0.36 -17.56 9.75 -51.49 -0.50 -18.06 16 10 C 0.25 13.92 2.25 29.85 0.07 13.99 16 11 H 0.00 0.23 6.91 -2.39 -0.02 0.21 16 12 C -0.56 -31.91 8.88 25.60 0.23 -31.69 16 13 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 14 C 0.03 1.38 5.30 84.65 0.45 1.83 16 15 N -0.90 -50.91 11.43 21.45 0.25 -50.67 16 16 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 C -0.13 -6.62 4.47 -10.79 -0.05 -6.66 16 21 C -0.12 -5.91 9.04 30.62 0.28 -5.64 16 22 C -0.20 -8.61 9.80 30.62 0.30 -8.31 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.17 6.57 -2.39 -0.02 1.16 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.51 7.96 -2.38 -0.02 1.49 16 30 H 0.10 1.67 6.57 -2.39 -0.02 1.65 16 31 H 0.06 1.57 8.11 -2.39 -0.02 1.55 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.27 14.25 8.31 -92.72 -0.77 13.48 16 34 H 0.08 4.13 8.11 -2.39 -0.02 4.11 16 35 H 0.09 3.92 8.14 -2.39 -0.02 3.90 16 36 H 0.06 3.31 8.05 -2.39 -0.02 3.29 16 37 H 0.08 3.87 5.37 -2.38 -0.01 3.85 16 38 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 Total: -1.00 -65.60 309.61 6.42 -59.18 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 1.02 Total: 18.50 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.35 Total: -28.12 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.25 Total: -50.67 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.22 Total: -44.15 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -65.60 6.42 -59.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.566 kcal (2) G-P(sol) polarization free energy of solvation -65.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds