Wall clock time and date at job start Sun Mar 29 2020 22:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48498 * 109.47283 * 239.99835 * 3 2 1 5 5 H 1.48499 * 109.47545 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47341 * 120.00064 * 3 2 1 7 7 C 1.38813 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99566 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.50015 * 243.74696 * 18 17 16 20 20 C 1.53008 * 117.50075 * 175.09104 * 18 17 16 21 21 H 0.97001 * 119.99359 * 359.97438 * 1 2 3 22 22 H 0.97003 * 119.99763 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.46596 * 59.99748 * 10 9 7 24 24 H 1.09002 * 109.47129 * 300.00103 * 10 9 7 25 25 H 1.09001 * 109.46832 * 60.00052 * 11 10 9 26 26 H 1.09002 * 109.47153 * 300.00243 * 11 10 9 27 27 H 0.96995 * 120.00423 * 359.97438 * 12 11 10 28 28 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 29 29 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 30 30 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 31 31 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 32 32 H 1.09002 * 109.47103 * 300.00247 * 17 16 15 33 33 H 1.09001 * 109.47066 * 60.00169 * 17 16 15 34 34 H 1.08997 * 115.55067 * 29.41999 * 18 17 16 35 35 H 1.09000 * 117.49856 * 359.97438 * 19 18 17 36 36 H 1.08999 * 117.49661 * 145.01806 * 19 18 17 37 37 H 1.08999 * 117.49506 * 214.98514 * 20 18 17 38 38 H 1.09002 * 117.49810 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 7 1.7962 -6.0884 0.0018 13 6 1.1222 -7.2556 0.0019 14 8 -0.0906 -7.2556 0.0020 15 6 1.8757 -8.5607 0.0031 16 6 0.8814 -9.7236 0.0036 17 6 1.6463 -11.0486 0.0042 18 6 0.6521 -12.2115 0.0054 19 6 0.6497 -13.1378 1.2232 20 6 1.2207 -13.6273 -0.1100 21 1 -0.4849 0.8401 0.0004 22 1 0.3555 -2.3880 0.0005 23 1 2.6846 -3.7145 0.8905 24 1 2.6846 -3.7146 -0.8894 25 1 0.4367 -4.7621 -0.8886 26 1 0.4373 -4.7618 0.8914 27 1 2.7661 -6.0885 0.0014 28 1 2.5029 -8.6190 -0.8864 29 1 2.5017 -8.6181 0.8936 30 1 0.2545 -9.6652 0.8934 31 1 0.2550 -9.6666 -0.8865 32 1 2.2730 -11.1068 -0.8857 33 1 2.2729 -11.1060 0.8943 34 1 -0.3047 -12.0126 -0.4774 35 1 1.3568 -12.9190 2.0233 36 1 -0.3086 -13.5484 1.5413 37 1 0.6378 -14.3597 -0.6685 38 1 2.3031 -13.7303 -0.1872 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132600291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:38 Heat of formation + Delta-G solvation = -25.438559 kcal Electronic energy + Delta-G solvation = -16106.166825 eV Core-core repulsion = 13369.842469 eV Total energy + Delta-G solvation = -2736.324357 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60186 -37.96457 -35.72404 -33.90892 -33.80048 -31.23854 -28.85215 -27.09803 -23.77766 -22.72301 -22.31929 -21.40840 -20.73003 -20.01988 -17.32949 -16.86531 -16.11124 -15.65908 -15.52687 -14.80806 -14.61574 -14.45920 -13.71903 -13.60447 -13.18064 -12.91557 -12.56414 -12.32881 -11.91508 -11.83398 -11.39208 -11.29253 -11.09865 -11.01013 -10.81723 -10.79517 -10.49769 -10.15382 -10.14490 -9.84515 -9.62444 -8.97032 -8.79703 -6.99522 -5.79421 -3.10252 2.78583 3.30484 3.42745 3.47008 3.48438 3.51064 4.32777 4.56942 4.60525 4.62819 4.74530 4.90287 4.99411 5.09199 5.32244 5.38377 5.46246 5.50217 5.50395 5.53835 5.59138 5.70147 5.79122 5.79959 5.93794 5.97604 6.05762 6.16687 6.20998 6.51799 6.71301 6.77106 7.65075 7.66817 8.37096 8.39487 9.49272 10.04310 10.39062 11.43107 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.101031 B = 0.002740 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 277.075201 B =10214.979278 C =10383.342813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.726 5.726 13 C 0.507 3.493 14 O -0.544 6.544 15 C -0.141 4.141 16 C -0.101 4.101 17 C -0.089 4.089 18 C -0.151 4.151 19 C -0.182 4.182 20 C -0.185 4.185 21 H 0.257 0.743 22 H 0.386 0.614 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.399 0.601 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.617 -24.366 0.299 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.377 5.377 13 C 0.293 3.707 14 O -0.421 6.421 15 C -0.181 4.181 16 C -0.139 4.139 17 C -0.127 4.127 18 C -0.170 4.170 19 C -0.219 4.219 20 C -0.222 4.222 21 H 0.067 0.933 22 H 0.220 0.780 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.233 0.767 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.851 -24.211 0.300 24.694 hybrid contribution 0.648 0.978 0.010 1.173 sum 5.498 -23.234 0.310 23.878 Atomic orbital electron populations 1.69662 1.05155 1.25967 1.57109 1.24792 0.95584 0.97848 1.02671 0.86211 0.78479 0.83262 0.77856 1.21191 1.21607 1.21184 1.19150 0.91003 0.83884 1.43552 0.91084 1.42193 1.06015 0.99591 1.89702 1.20755 0.93507 0.85723 0.98348 1.21563 0.95455 0.81899 1.02467 1.45990 1.10401 1.06127 1.75216 1.20696 0.88331 0.85530 0.76123 1.90708 1.14139 1.87770 1.49472 1.21687 0.99574 0.92547 1.04255 1.21310 0.97327 0.91463 1.03826 1.21209 0.96792 0.92712 1.01974 1.22365 1.01112 0.90973 1.02503 1.23048 1.02776 1.04365 0.91723 1.22978 1.00893 0.97442 1.00843 0.93300 0.78002 0.95848 0.95840 0.91387 0.91391 0.76714 0.88998 0.89035 0.91031 0.91098 0.91525 0.91806 0.87675 0.88816 0.88984 0.88992 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.79 5.60 -59.91 -0.34 -19.12 16 10 C 0.14 2.87 6.37 -4.04 -0.03 2.84 16 11 C 0.11 1.93 5.79 -4.04 -0.02 1.90 16 12 N -0.73 -9.90 5.56 -60.30 -0.33 -10.23 16 13 C 0.51 7.09 7.83 -10.98 -0.09 7.01 16 14 O -0.54 -10.01 15.98 5.56 0.09 -9.93 16 15 C -0.14 -1.29 5.70 -27.88 -0.16 -1.45 16 16 C -0.10 -0.97 4.46 -26.74 -0.12 -1.09 16 17 C -0.09 -0.67 5.50 -26.74 -0.15 -0.81 16 18 C -0.15 -1.17 5.73 -90.62 -0.52 -1.69 16 19 C -0.18 -1.30 10.18 -26.69 -0.27 -1.57 16 20 C -0.18 -1.25 10.25 -26.69 -0.27 -1.53 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.39 10.53 7.67 -40.82 -0.31 10.21 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.40 4.18 8.47 -40.82 -0.35 3.84 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 34 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.09 0.63 8.03 -51.93 -0.42 0.21 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -33.00 322.26 -8.41 -41.42 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.52 Total: 7.27 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.87 Total: -3.89 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.05 Total: -57.10 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.00 -8.41 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132600291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.978 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds