Wall clock time and date at job start Sun Mar 29 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.45757 * 117.94083 * 2 1 4 4 C 1.52927 * 110.48164 * 199.07361 * 3 2 1 5 5 H 1.09001 * 109.60412 * 69.00213 * 4 3 2 6 6 N 1.46497 * 109.60135 * 189.32340 * 4 3 2 7 7 C 1.34776 * 120.00308 * 275.00549 * 6 4 3 8 8 O 1.21280 * 120.00200 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99994 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47011 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00336 * 0.02562 * 10 9 7 12 12 C 1.37877 * 119.99935 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00428 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00042 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46970 * 89.99749 * 14 12 10 16 16 H 1.48501 * 109.47149 * 209.99974 * 14 12 10 17 17 H 1.48501 * 109.47018 * 330.00032 * 14 12 10 18 18 C 1.53342 * 108.67632 * 309.24721 * 4 3 2 19 19 C 1.53066 * 108.42643 * 67.52996 * 18 4 3 20 20 C 1.33349 * 117.94734 * 179.97438 * 2 1 3 21 21 O 1.21277 * 118.24876 * 357.80513 * 20 2 1 22 22 H 1.09001 * 109.47105 * 90.00744 * 1 2 3 23 23 H 1.09005 * 109.46717 * 209.99934 * 1 2 3 24 24 H 1.08995 * 109.47503 * 330.00150 * 1 2 3 25 25 H 1.08995 * 109.30501 * 78.76208 * 3 2 1 26 26 H 1.09002 * 109.29865 * 319.38116 * 3 2 1 27 27 H 0.97009 * 119.99835 * 94.99749 * 6 4 3 28 28 H 1.08998 * 109.47337 * 299.99348 * 9 7 6 29 29 H 1.09002 * 109.47235 * 59.99292 * 9 7 6 30 30 H 0.97000 * 120.00601 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.67342 * 187.26843 * 18 4 3 32 32 H 1.09006 * 109.66896 * 307.79579 * 18 4 3 33 33 H 1.09000 * 109.39830 * 71.23169 * 19 18 4 34 34 H 1.09004 * 109.39855 * 190.97343 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5948 1.1260 -0.4681 5 1 3.6101 0.8726 -1.5282 6 7 4.3243 2.3779 -0.2516 7 6 4.2720 3.3569 -1.1763 8 8 3.6215 3.2015 -2.1880 9 6 5.0229 4.6444 -0.9537 10 6 4.8013 5.5643 -2.1266 11 1 4.1788 5.2485 -2.9506 12 6 5.3926 6.8097 -2.1473 13 7 6.1496 7.1951 -1.1433 14 14 5.1175 7.9503 -3.6009 15 1 3.9231 8.7956 -3.3477 16 1 6.3089 8.8182 -3.7816 17 1 4.9018 7.1438 -4.8291 18 6 4.2493 -0.0012 0.3397 19 6 3.5839 -1.3239 -0.0485 20 6 2.0900 -1.1780 0.0005 21 8 1.4160 -2.1853 0.0419 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 2.1397 1.6999 1.0089 26 1 1.6269 1.9718 -0.6698 27 1 4.8448 2.5022 0.5575 28 1 4.6620 5.1228 -0.0432 29 1 6.0874 4.4319 -0.8550 30 1 6.5659 8.0711 -1.1580 31 1 5.3142 -0.0454 0.1118 32 1 4.1087 0.1816 1.4051 33 1 3.8881 -1.5996 -1.0582 34 1 3.8944 -2.1033 0.6475 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203067.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:38 Heat of formation + Delta-G solvation = -81.187297 kcal Electronic energy + Delta-G solvation = -17159.838147 eV Core-core repulsion = 14285.263249 eV Total energy + Delta-G solvation = -2874.574898 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63636 -38.83847 -36.53335 -34.63667 -32.98251 -32.66968 -29.55925 -28.18947 -27.03771 -24.56574 -23.58051 -21.90611 -19.84189 -18.79961 -16.93045 -16.57804 -16.41700 -16.09881 -15.74131 -15.00517 -14.60362 -14.33549 -14.09857 -13.75178 -13.34890 -12.89471 -12.71230 -12.49577 -12.15313 -11.99022 -11.91554 -11.53782 -11.21008 -11.02142 -10.79841 -10.66725 -10.00710 -9.79843 -9.33222 -8.89547 -8.77065 -8.67270 -8.47303 -6.10869 -4.10757 2.54561 2.86071 3.31677 3.37368 3.43761 3.56425 3.67483 4.43139 4.47347 4.52575 4.67644 4.85265 5.12937 5.17828 5.24522 5.27782 5.43771 5.48235 5.56115 5.61243 5.72437 5.86652 5.93457 6.24450 6.29569 6.84042 7.10329 7.25250 7.34424 7.89376 7.95655 8.04514 8.33177 9.00021 9.09335 9.54773 11.01386 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.048398 B = 0.004741 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.392151 B = 5904.197104 C = 6187.147856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.601 5.601 3 C 0.100 3.900 4 C 0.132 3.868 5 H 0.093 0.907 6 N -0.741 5.741 7 C 0.516 3.484 8 O -0.542 6.542 9 C 0.005 3.995 10 C -0.510 4.510 11 H 0.075 0.925 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.901 3.099 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.272 1.272 18 C -0.132 4.132 19 C -0.129 4.129 20 C 0.514 3.486 21 O -0.562 6.562 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.400 0.600 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.262 0.738 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -12.664 6.223 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.334 5.334 3 C -0.024 4.024 4 C 0.026 3.974 5 H 0.111 0.889 6 N -0.396 5.396 7 C 0.306 3.694 8 O -0.417 6.417 9 C -0.034 4.034 10 C -0.548 4.548 11 H 0.093 0.907 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.729 3.271 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.170 4.170 19 C -0.169 4.169 20 C 0.303 3.697 21 O -0.441 6.441 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.234 0.766 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.076 -13.105 5.533 15.104 hybrid contribution 0.166 0.912 -0.259 0.963 sum -4.909 -12.193 5.275 14.163 Atomic orbital electron populations 1.21714 0.79469 1.03185 1.02233 1.47185 1.07608 1.06113 1.72504 1.21953 0.94056 0.84209 1.02227 1.20949 0.89867 0.85407 1.01206 0.88891 1.46300 1.52884 1.15780 1.24604 1.22129 0.80282 0.85482 0.81496 1.90552 1.42323 1.80693 1.28114 1.19249 0.96074 0.88045 1.00007 1.21153 1.30176 0.99011 1.04474 0.90691 1.25002 0.95019 0.98050 0.96473 1.69951 1.32459 1.20530 1.31073 0.86434 0.77551 0.80363 0.82774 1.20599 1.21249 1.19666 1.21967 1.01211 0.93065 1.00727 1.21584 0.90906 0.99214 1.05202 1.20201 0.91057 0.82689 0.75802 1.90693 1.66591 1.35813 1.51045 0.92495 0.90192 0.91161 0.91289 0.89679 0.76619 0.93345 0.93324 0.92858 0.89505 0.90582 0.87922 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.24 59.85 0.61 1.46 16 2 N -0.60 -7.50 3.21 -182.85 -0.59 -8.09 16 3 C 0.10 1.24 5.90 -4.48 -0.03 1.22 16 4 C 0.13 1.69 2.52 -67.79 -0.17 1.52 16 5 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 6 N -0.74 -10.95 5.09 -53.67 -0.27 -11.23 16 7 C 0.52 10.71 7.79 -10.99 -0.09 10.62 16 8 O -0.54 -13.11 15.13 5.56 0.08 -13.03 16 9 C 0.01 0.13 5.46 -29.04 -0.16 -0.03 16 10 C -0.51 -14.27 8.92 -34.44 -0.31 -14.57 16 11 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 14 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.13 -1.23 5.52 -26.52 -0.15 -1.37 16 19 C -0.13 -1.27 6.03 -28.10 -0.17 -1.43 16 20 C 0.51 6.79 7.47 -11.87 -0.09 6.70 16 21 O -0.56 -9.23 16.18 5.56 0.09 -9.14 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.92 7.13 -51.93 -0.37 0.55 16 24 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 27 H 0.40 4.82 8.61 -40.82 -0.35 4.47 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.63 8.13 -51.93 -0.42 0.20 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -33.38 288.69 -6.08 -39.46 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.82 Total: 0.46 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.64 Total: 5.57 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.12 Total: -44.27 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.17 Total: -22.17 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.38 -6.08 -39.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203067.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.725 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds