Wall clock time and date at job start Sun Mar 29 2020 22:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.45757 * 117.94083 * 2 1 4 4 C 1.52927 * 110.48164 * 199.07361 * 3 2 1 5 5 H 1.09001 * 109.60412 * 69.00213 * 4 3 2 6 6 N 1.46497 * 109.60135 * 189.32340 * 4 3 2 7 7 C 1.34776 * 120.00308 * 275.00549 * 6 4 3 8 8 O 1.21280 * 120.00200 * 359.97438 * 7 6 4 9 9 C 1.50698 * 119.99994 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47011 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00336 * 0.02562 * 10 9 7 12 12 C 1.37877 * 119.99935 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00428 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00042 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46970 * 89.99749 * 14 12 10 16 16 H 1.48501 * 109.47149 * 209.99974 * 14 12 10 17 17 H 1.48501 * 109.47018 * 330.00032 * 14 12 10 18 18 C 1.53342 * 108.67632 * 309.24721 * 4 3 2 19 19 C 1.53066 * 108.42643 * 67.52996 * 18 4 3 20 20 C 1.33349 * 117.94734 * 179.97438 * 2 1 3 21 21 O 1.21277 * 118.24876 * 357.80513 * 20 2 1 22 22 H 1.09001 * 109.47105 * 90.00744 * 1 2 3 23 23 H 1.09005 * 109.46717 * 209.99934 * 1 2 3 24 24 H 1.08995 * 109.47503 * 330.00150 * 1 2 3 25 25 H 1.08995 * 109.30501 * 78.76208 * 3 2 1 26 26 H 1.09002 * 109.29865 * 319.38116 * 3 2 1 27 27 H 0.97009 * 119.99835 * 94.99749 * 6 4 3 28 28 H 1.08998 * 109.47337 * 299.99348 * 9 7 6 29 29 H 1.09002 * 109.47235 * 59.99292 * 9 7 6 30 30 H 0.97000 * 120.00601 * 179.97438 * 13 12 10 31 31 H 1.08994 * 109.67342 * 187.26843 * 18 4 3 32 32 H 1.09006 * 109.66896 * 307.79579 * 18 4 3 33 33 H 1.09000 * 109.39830 * 71.23169 * 19 18 4 34 34 H 1.09004 * 109.39855 * 190.97343 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5948 1.1260 -0.4681 5 1 3.6101 0.8726 -1.5282 6 7 4.3243 2.3779 -0.2516 7 6 4.2720 3.3569 -1.1763 8 8 3.6215 3.2015 -2.1880 9 6 5.0229 4.6444 -0.9537 10 6 4.8013 5.5643 -2.1266 11 1 4.1788 5.2485 -2.9506 12 6 5.3926 6.8097 -2.1473 13 7 6.1496 7.1951 -1.1433 14 14 5.1175 7.9503 -3.6009 15 1 3.9231 8.7956 -3.3477 16 1 6.3089 8.8182 -3.7816 17 1 4.9018 7.1438 -4.8291 18 6 4.2493 -0.0012 0.3397 19 6 3.5839 -1.3239 -0.0485 20 6 2.0900 -1.1780 0.0005 21 8 1.4160 -2.1853 0.0419 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 2.1397 1.6999 1.0089 26 1 1.6269 1.9718 -0.6698 27 1 4.8448 2.5022 0.5575 28 1 4.6620 5.1228 -0.0432 29 1 6.0874 4.4319 -0.8550 30 1 6.5659 8.0711 -1.1580 31 1 5.3142 -0.0454 0.1118 32 1 4.1087 0.1816 1.4051 33 1 3.8881 -1.5996 -1.0582 34 1 3.8944 -2.1033 0.6475 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143203067.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:38 Heat of formation + Delta-G solvation = -105.570203 kcal Electronic energy + Delta-G solvation = -17160.895469 eV Core-core repulsion = 14285.263249 eV Total energy + Delta-G solvation = -2875.632220 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.69146 -40.34843 -37.76191 -35.73704 -35.06536 -33.84732 -31.22767 -29.54110 -28.03581 -25.91890 -25.06640 -23.02587 -21.37168 -19.83347 -18.53743 -17.97333 -17.60834 -17.30820 -17.21623 -16.51427 -16.03881 -15.81890 -15.22775 -14.94214 -14.54111 -14.34202 -14.13597 -13.65281 -13.40233 -13.29001 -12.97946 -12.83607 -12.73937 -12.54720 -12.42084 -12.03742 -11.85561 -11.42112 -10.84614 -10.60269 -10.52640 -10.10227 -9.80980 -8.23298 -6.29555 1.41989 1.42472 1.53449 1.54644 1.80667 1.95291 2.35463 2.51862 3.12791 3.53872 3.63390 3.66710 3.95875 4.20389 4.33921 4.39605 4.42575 4.53179 4.58788 4.76673 4.82571 4.86385 5.03926 5.11067 5.16451 5.27890 5.32128 5.54020 5.75873 6.09156 6.34925 6.73549 6.87203 7.03551 7.36715 7.53719 8.88516 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.048398 B = 0.004741 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.392151 B = 5904.197104 C = 6187.147856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.603 5.603 3 C 0.106 3.894 4 C 0.131 3.869 5 H 0.070 0.930 6 N -0.715 5.715 7 C 0.523 3.477 8 O -0.581 6.581 9 C 0.007 3.993 10 C -0.535 4.535 11 H 0.054 0.946 12 C 0.012 3.988 13 N -0.924 5.924 14 Si 0.959 3.041 15 H -0.273 1.273 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.118 4.118 19 C -0.123 4.123 20 C 0.506 3.494 21 O -0.599 6.599 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.417 0.583 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.267 0.733 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 -12.996 7.076 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.334 5.334 3 C -0.018 4.018 4 C 0.025 3.975 5 H 0.088 0.912 6 N -0.369 5.369 7 C 0.312 3.688 8 O -0.460 6.460 9 C -0.032 4.032 10 C -0.574 4.574 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.564 5.564 14 Si 0.784 3.216 15 H -0.198 1.198 16 H -0.201 1.201 17 H -0.200 1.200 18 C -0.156 4.156 19 C -0.163 4.163 20 C 0.296 3.704 21 O -0.482 6.482 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.255 0.745 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.521 -13.447 6.440 15.580 hybrid contribution -0.026 0.986 -0.495 1.104 sum -4.547 -12.460 5.944 14.535 Atomic orbital electron populations 1.21806 0.78912 1.03921 1.02340 1.47278 1.08225 1.06012 1.71912 1.21840 0.93426 0.83859 1.02695 1.21077 0.90406 0.85192 1.00856 0.91177 1.45871 1.52107 1.15163 1.23718 1.21462 0.79719 0.85738 0.81884 1.90538 1.44036 1.81455 1.30016 1.19088 0.96291 0.89419 0.98451 1.21384 1.30273 1.00370 1.05342 0.92764 1.25719 0.94697 0.99323 0.98925 1.70013 1.32879 1.21097 1.32365 0.85533 0.77989 0.78515 0.79520 1.19805 1.20055 1.20040 1.21922 1.01685 0.90842 1.01136 1.21624 0.88272 1.00038 1.06330 1.20860 0.92458 0.82157 0.74909 1.90678 1.67705 1.36888 1.52885 0.92758 0.90725 0.89141 0.89328 0.91859 0.74540 0.93606 0.93690 0.92459 0.87685 0.88477 0.87237 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 10.24 127.77 1.31 2.86 16 2 N -0.60 -14.28 3.21 -851.59 -2.73 -17.01 16 3 C 0.11 2.48 5.90 86.49 0.51 2.99 16 4 C 0.13 3.10 2.52 45.08 0.11 3.21 16 5 H 0.07 2.05 7.58 -2.39 -0.02 2.04 16 6 N -0.71 -19.86 5.09 -442.11 -2.25 -22.11 16 7 C 0.52 21.57 7.79 87.66 0.68 22.25 16 8 O -0.58 -28.56 15.13 -3.03 -0.05 -28.60 16 9 C 0.01 0.33 5.46 29.10 0.16 0.49 16 10 C -0.54 -30.33 8.92 25.60 0.23 -30.10 16 11 H 0.05 3.25 6.75 -2.91 -0.02 3.23 16 12 C 0.01 0.67 5.46 84.65 0.46 1.13 16 13 N -0.92 -52.38 13.29 21.45 0.28 -52.10 16 14 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 C -0.12 -1.78 5.52 30.73 0.17 -1.61 16 19 C -0.12 -2.07 6.03 29.71 0.18 -1.89 16 20 C 0.51 12.63 7.47 87.72 0.66 13.28 16 21 O -0.60 -19.25 16.18 -3.02 -0.05 -19.30 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.68 7.13 -2.38 -0.02 1.66 16 24 H 0.09 1.52 8.01 -2.39 -0.02 1.50 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 27 H 0.42 8.90 8.61 -92.70 -0.80 8.10 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.14 8.13 -2.38 -0.02 1.12 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.42 288.69 2.00 -70.42 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.30 Total: 9.84 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 4.47 Total: 12.62 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -4.70 Total: -91.22 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.09 Total: -47.91 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.42 2.00 -70.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203067.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.152 kcal (2) G-P(sol) polarization free energy of solvation -72.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds