Wall clock time and date at job start Sun Mar 29 2020 22:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46765 * 124.35470 * 2 1 4 4 C 1.54831 * 105.49704 * 197.01816 * 3 2 1 5 5 H 1.08994 * 111.01534 * 92.61619 * 4 3 2 6 6 C 1.53000 * 111.07465 * 216.48949 * 4 3 2 7 7 N 1.46503 * 109.46915 * 178.69750 * 6 4 3 8 8 C 1.34775 * 119.99900 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00274 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99943 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.47252 * 180.02562 * 10 8 7 12 12 H 1.07997 * 119.99726 * 359.97438 * 11 10 8 13 13 C 1.37880 * 120.00169 * 180.02562 * 11 10 8 14 14 N 1.31506 * 120.00036 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 119.99709 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47362 * 89.99943 * 15 13 11 17 17 H 1.48498 * 109.47186 * 210.00140 * 15 13 11 18 18 H 1.48502 * 109.47386 * 329.99863 * 15 13 11 19 19 C 1.54631 * 101.60220 * 334.56264 * 4 3 2 20 20 C 1.34418 * 124.34952 * 179.97438 * 2 1 3 21 21 O 1.21284 * 124.94191 * 359.57303 * 20 2 1 22 22 H 1.08994 * 109.47428 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47028 * 299.99713 * 1 2 3 24 24 H 1.09001 * 109.47387 * 59.99890 * 1 2 3 25 25 H 1.09001 * 110.23936 * 315.99466 * 3 2 1 26 26 H 1.08998 * 110.24401 * 77.90012 * 3 2 1 27 27 H 1.09006 * 109.47121 * 298.69496 * 6 4 3 28 28 H 1.08997 * 109.47679 * 58.69724 * 6 4 3 29 29 H 0.96999 * 119.99571 * 0.02562 * 7 6 4 30 30 H 1.09006 * 109.46924 * 300.00410 * 10 8 7 31 31 H 1.08997 * 109.47020 * 60.00114 * 10 8 7 32 32 H 0.97004 * 120.00217 * 179.97438 * 14 13 11 33 33 H 1.09002 * 110.48855 * 266.08223 * 19 4 3 34 34 H 1.08998 * 110.48570 * 143.57284 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7044 0.7481 -0.4367 5 1 3.8306 0.8425 -1.5152 6 6 4.7931 1.5217 0.3097 7 7 6.1107 1.0347 -0.1064 8 6 7.2265 1.5743 0.4230 9 8 7.1399 2.4626 1.2442 10 6 8.5819 1.0737 -0.0054 11 6 9.6543 1.8356 0.7298 12 1 9.3816 2.6056 1.4363 13 6 10.9835 1.5505 0.4997 14 7 11.9193 2.2157 1.1410 15 14 11.4550 0.2192 -0.7228 16 1 11.6065 0.8183 -2.0731 17 1 12.7396 -0.4003 -0.3091 18 1 10.3937 -0.8189 -0.7581 19 6 3.6898 -0.7379 -0.0092 20 6 2.2234 -1.1098 0.0005 21 8 1.7945 -2.2442 0.0084 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8987 1.9381 -0.7105 26 1 2.3290 1.6440 0.9999 27 1 4.7083 2.5834 0.0778 28 1 4.6733 1.3736 1.3829 29 1 6.1799 0.3245 -0.7634 30 1 8.6671 0.0120 0.2264 31 1 8.7013 1.2220 -1.0787 32 1 12.8544 2.0148 0.9794 33 1 4.1191 -0.8529 0.9860 34 1 4.2332 -1.3478 -0.7309 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143203408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:21 Heat of formation + Delta-G solvation = -75.048081 kcal Electronic energy + Delta-G solvation = -16737.920305 eV Core-core repulsion = 13863.611624 eV Total energy + Delta-G solvation = -2874.308682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.71903 -38.80963 -36.89905 -34.84050 -32.85539 -32.44424 -29.86265 -28.37024 -27.30678 -25.16227 -22.90267 -21.10251 -20.10265 -19.37594 -17.18500 -16.93469 -16.80650 -15.80557 -15.48766 -15.29137 -15.01871 -14.17384 -14.00971 -13.99015 -13.63340 -13.10970 -12.86846 -12.63310 -12.54011 -12.19213 -12.16401 -11.68853 -11.39716 -11.21672 -10.81731 -10.57513 -10.03262 -9.99403 -9.28017 -9.05544 -8.85460 -8.66033 -8.57589 -6.04310 -4.04209 2.34501 2.69239 3.25636 3.32034 3.34602 3.55221 3.61604 4.03554 4.21801 4.39639 4.43843 4.67030 4.92702 5.01082 5.07968 5.14342 5.26388 5.28920 5.37662 5.47866 5.54290 5.71979 5.86432 6.13103 6.17124 6.58944 6.77406 6.86917 6.89850 7.52481 7.90340 8.06658 8.54497 9.05343 9.16442 9.53995 11.08716 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.046995 B = 0.004350 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.665211 B = 6435.744865 C = 6853.942996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.626 5.626 3 C 0.110 3.890 4 C -0.112 4.112 5 H 0.099 0.901 6 C 0.132 3.868 7 N -0.750 5.750 8 C 0.522 3.478 9 O -0.531 6.531 10 C -0.030 4.030 11 C -0.514 4.514 12 H 0.092 0.908 13 C 0.068 3.932 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.266 1.266 19 C -0.153 4.153 20 C 0.518 3.482 21 O -0.536 6.536 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.396 0.604 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.111 0.889 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.845 -3.970 -5.888 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.361 5.361 3 C -0.013 4.013 4 C -0.131 4.131 5 H 0.117 0.883 6 C 0.007 3.993 7 N -0.406 5.406 8 C 0.311 3.689 9 O -0.406 6.406 10 C -0.069 4.069 11 C -0.552 4.552 12 H 0.110 0.890 13 C -0.133 4.133 14 N -0.536 5.536 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.191 1.191 19 C -0.193 4.193 20 C 0.307 3.693 21 O -0.412 6.412 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.014 -3.876 -5.231 21.999 hybrid contribution 0.334 -0.923 -0.990 1.394 sum -20.680 -4.799 -6.221 22.122 Atomic orbital electron populations 1.21559 0.78066 1.03727 1.01555 1.48178 1.06560 1.07490 1.73873 1.22120 0.89482 0.87114 1.02607 1.22469 0.94193 0.94501 1.01919 0.88279 1.21127 0.81676 0.97964 0.98528 1.46235 1.05291 1.41891 1.47144 1.21413 0.86105 0.81320 0.80061 1.90592 1.87251 1.30042 1.32690 1.19685 0.90250 0.98611 0.98405 1.21000 0.88706 1.20678 1.24815 0.89005 1.24984 0.96371 0.96077 0.95891 1.69892 1.00276 1.41203 1.42204 0.86876 0.78338 0.82666 0.81889 1.20163 1.21142 1.19098 1.22483 0.94290 0.96944 1.05600 1.20995 0.89433 0.84241 0.74680 1.90723 1.78768 1.21190 1.50567 0.89965 0.91994 0.92026 0.89865 0.90308 0.91203 0.91449 0.77102 0.93568 0.94028 0.92580 0.87097 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.14 59.84 0.67 1.31 16 2 N -0.63 -5.64 3.33 -180.07 -0.60 -6.24 16 3 C 0.11 0.77 6.93 -2.93 -0.02 0.75 16 4 C -0.11 -0.89 3.23 -88.80 -0.29 -1.17 16 5 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 6 C 0.13 1.49 4.97 -4.04 -0.02 1.47 16 7 N -0.75 -10.69 5.41 -60.29 -0.33 -11.02 16 8 C 0.52 10.82 7.82 -10.98 -0.09 10.73 16 9 O -0.53 -13.25 15.46 5.56 0.09 -13.16 16 10 C -0.03 -0.68 4.53 -29.03 -0.13 -0.81 16 11 C -0.51 -14.84 9.48 -34.44 -0.33 -15.17 16 12 H 0.09 3.02 7.00 -52.49 -0.37 2.65 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 15 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 19 C -0.15 -1.42 6.11 -26.74 -0.16 -1.58 16 20 C 0.52 6.03 8.02 -10.86 -0.09 5.94 16 21 O -0.54 -8.36 17.35 5.55 0.10 -8.26 16 22 H 0.08 0.67 7.53 -51.93 -0.39 0.28 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.52 7.90 -51.93 -0.41 0.11 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 29 H 0.40 4.50 8.34 -40.82 -0.34 4.16 16 30 H 0.05 1.00 7.20 -51.93 -0.37 0.62 16 31 H 0.04 0.88 7.57 -51.93 -0.39 0.49 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.11 1.07 7.85 -51.93 -0.41 0.67 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 290.06 15.07 4.37 4.37 Total: -1.00 -36.48 290.06 -5.63 -42.11 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.81 Total: -0.18 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.55 Total: 3.34 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.15 Total: -44.19 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.18 Total: -21.42 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.48 -5.63 -42.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143203408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.942 kcal (2) G-P(sol) polarization free energy of solvation -36.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds