Wall clock time and date at job start Sun Mar 29 2020 22:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00492 * 2 1 4 4 H 1.48489 * 109.47270 * 240.00189 * 3 2 1 5 5 H 1.48509 * 109.46896 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47210 * 119.99736 * 3 2 1 7 7 C 1.38815 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99821 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00340 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00330 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46993 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47030 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99867 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00166 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00142 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.46957 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46626 * 180.02562 * 17 16 14 19 19 C 1.53003 * 117.49663 * 243.74292 * 18 17 16 20 20 C 1.53002 * 117.49643 * 175.08260 * 18 17 16 21 21 H 0.96997 * 120.00007 * 359.97438 * 1 2 3 22 22 H 0.97004 * 119.99308 * 359.97438 * 9 7 2 23 23 H 1.08992 * 109.46764 * 59.99692 * 10 9 7 24 24 H 1.08999 * 109.46486 * 300.00054 * 10 9 7 25 25 H 1.09004 * 109.47298 * 60.00068 * 11 10 9 26 26 H 1.09000 * 109.47054 * 299.99945 * 11 10 9 27 27 H 1.09004 * 109.46930 * 59.99996 * 12 11 10 28 28 H 1.09004 * 109.47059 * 300.00394 * 12 11 10 29 29 H 0.96999 * 120.00085 * 0.02562 * 13 12 11 30 30 H 1.08993 * 109.46700 * 59.99973 * 16 14 13 31 31 H 1.09000 * 109.46974 * 300.00347 * 16 14 13 32 32 H 1.08993 * 109.47839 * 60.00178 * 17 16 14 33 33 H 1.09000 * 109.47160 * 299.99740 * 17 16 14 34 34 H 1.09002 * 115.55153 * 29.41498 * 18 17 16 35 35 H 1.08998 * 117.49856 * 0.02562 * 19 18 17 36 36 H 1.09000 * 117.49861 * 145.02337 * 19 18 17 37 37 H 1.08993 * 117.50251 * 214.97577 * 20 18 17 38 38 H 1.09003 * 117.49715 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8285 -6.1448 0.0005 13 7 0.8765 -7.2582 0.0018 14 6 1.3257 -8.5289 0.0009 15 8 2.5181 -8.7506 -0.0003 16 6 0.3463 -9.6744 0.0016 17 6 1.1114 -10.9994 0.0011 18 6 0.1170 -12.1623 0.0012 19 6 0.1146 -13.0897 1.2181 20 6 0.6856 -13.5779 -0.1156 21 1 -0.4850 0.8400 0.0004 22 1 0.3554 -2.3880 0.0005 23 1 2.6845 -3.7146 0.8904 24 1 2.6845 -3.7146 -0.8895 25 1 0.4366 -4.7622 -0.8886 26 1 0.4373 -4.7618 0.8914 27 1 2.4559 -6.2026 0.8901 28 1 2.4546 -6.2025 -0.8899 29 1 -0.0772 -7.0809 0.0024 30 1 -0.2812 -9.6163 -0.8876 31 1 -0.2794 -9.6169 0.8923 32 1 1.7386 -11.0573 0.8906 33 1 1.7374 -11.0572 -0.8893 34 1 -0.8398 -11.9628 -0.4815 35 1 0.8211 -12.8711 2.0188 36 1 -0.8436 -13.5006 1.5359 37 1 0.1028 -14.3099 -0.6747 38 1 1.7681 -13.6808 -0.1921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155958144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:39 Heat of formation + Delta-G solvation = -48.073538 kcal Electronic energy + Delta-G solvation = -16087.335249 eV Core-core repulsion = 13350.029366 eV Total energy + Delta-G solvation = -2737.305883 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78265 -38.41710 -37.49290 -35.88846 -33.84511 -33.10733 -31.17676 -27.39446 -25.71436 -24.04289 -23.19541 -22.58145 -21.37745 -21.11293 -19.18498 -17.83110 -17.21636 -17.02770 -16.55485 -16.29716 -15.95967 -15.34188 -15.28454 -14.91195 -14.62297 -14.19491 -13.73927 -13.32891 -13.05116 -12.79220 -12.58938 -12.44109 -12.42765 -12.22914 -12.10966 -12.10543 -12.04285 -11.80169 -11.21586 -10.94674 -10.84243 -10.72784 -10.08648 -9.03194 -7.97345 -5.26764 1.47335 1.50552 1.56709 1.67282 2.21356 2.56130 2.93904 3.36186 3.70501 3.76644 3.84412 4.05976 4.08007 4.10292 4.28156 4.33767 4.40262 4.50107 4.62304 4.71857 4.72621 4.79509 4.82637 4.89842 5.07639 5.08520 5.16766 5.27872 5.29793 5.30707 5.42667 5.47552 5.49991 6.25341 6.59214 7.28638 7.31689 8.06201 8.30352 9.25930 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.095388 B = 0.002706 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.467389 B =10343.422568 C =10529.953146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.132 3.868 13 N -0.720 5.720 14 C 0.504 3.496 15 O -0.593 6.593 16 C -0.127 4.127 17 C -0.072 4.072 18 C -0.154 4.154 19 C -0.183 4.183 20 C -0.187 4.187 21 H 0.253 0.747 22 H 0.376 0.624 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.417 0.583 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 -24.853 0.249 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.155 4.155 12 C 0.007 3.993 13 N -0.372 5.372 14 C 0.292 3.708 15 O -0.474 6.474 16 C -0.167 4.167 17 C -0.110 4.110 18 C -0.172 4.172 19 C -0.220 4.220 20 C -0.224 4.224 21 H 0.062 0.938 22 H 0.208 0.792 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.254 0.746 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.140 0.860 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.429 -24.896 0.251 25.016 hybrid contribution -0.142 1.248 0.024 1.256 sum -2.572 -23.648 0.274 23.789 Atomic orbital electron populations 1.69796 1.06548 1.26318 1.59194 1.25608 0.96517 1.01213 1.03447 0.85176 0.77220 0.78927 0.78221 1.20363 1.21884 1.20378 1.19614 0.91551 0.85448 1.41754 0.90780 1.42540 1.05744 1.01150 1.89580 1.20684 0.94146 0.84850 0.97885 1.21694 0.98423 0.92150 1.03281 1.21059 0.91886 0.84765 1.01607 1.46001 1.11227 1.05214 1.74749 1.21487 0.89876 0.84871 0.74519 1.90686 1.19417 1.85520 1.51765 1.21684 0.97505 0.90662 1.06822 1.20847 0.96466 0.91734 1.01957 1.22360 1.01009 0.90609 1.03240 1.23130 1.03269 1.03990 0.91564 1.23054 1.01027 0.97310 1.01044 0.93841 0.79194 0.96131 0.96112 0.90684 0.90696 0.92333 0.92290 0.74626 0.86189 0.86431 0.92838 0.92470 0.86024 0.89314 0.87657 0.87694 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.10 13.06 21.65 0.28 -58.81 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.24 5.60 -343.46 -1.92 -40.17 16 10 C 0.15 6.02 6.26 86.38 0.54 6.56 16 11 C -0.12 -3.46 5.44 30.59 0.17 -3.29 16 12 C 0.13 3.50 5.67 86.38 0.49 3.99 16 13 N -0.72 -15.12 5.56 -463.05 -2.57 -17.69 16 14 C 0.50 11.66 7.83 87.66 0.69 12.34 16 15 O -0.59 -19.47 15.98 -3.03 -0.05 -19.52 16 16 C -0.13 -1.77 5.66 29.85 0.17 -1.60 16 17 C -0.07 -1.20 4.78 30.60 0.15 -1.05 16 18 C -0.15 -1.91 5.73 -10.79 -0.06 -1.97 16 19 C -0.18 -2.19 10.18 30.62 0.31 -1.87 16 20 C -0.19 -2.33 10.26 30.62 0.31 -2.02 16 21 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 22 H 0.38 20.05 7.67 -92.71 -0.71 19.34 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.42 6.13 8.47 -92.71 -0.79 5.34 16 30 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.07 7.83 -2.39 -0.02 1.05 16 33 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.12 1.12 8.08 -2.39 -0.02 1.10 16 35 H 0.09 1.16 8.03 -2.39 -0.02 1.14 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.82 322.26 1.37 -69.45 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -0.46 Total: 24.72 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.07 Total: -6.26 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -4.21 Total: -116.67 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -70.82 1.37 -69.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155958144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.372 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds