Wall clock time and date at job start Sun Mar 29 2020 22:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00085 * 2 1 4 4 H 1.48497 * 109.46861 * 270.00655 * 3 2 1 5 5 H 1.48501 * 109.46730 * 30.00704 * 3 2 1 6 6 H 1.48500 * 109.47064 * 150.00355 * 3 2 1 7 7 C 1.38817 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99620 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00275 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99919 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46967 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47497 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47584 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00000 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99842 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99651 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.46728 * 180.02562 * 16 14 13 18 18 C 1.53786 * 113.61503 * 85.86370 * 17 16 14 19 19 C 1.54049 * 86.98426 * 140.01654 * 18 17 16 20 20 C 1.53781 * 113.61337 * 183.47164 * 17 16 14 21 21 H 0.97005 * 120.00043 * 359.97438 * 1 2 3 22 22 H 0.97004 * 119.99599 * 359.97438 * 9 7 2 23 23 H 1.09000 * 109.47239 * 59.99641 * 10 9 7 24 24 H 1.08997 * 109.47003 * 299.99475 * 10 9 7 25 25 H 1.09000 * 109.47147 * 59.99936 * 11 10 9 26 26 H 1.09004 * 109.47619 * 300.00177 * 11 10 9 27 27 H 1.09000 * 109.46834 * 59.99916 * 12 11 10 28 28 H 1.08994 * 109.46927 * 300.00614 * 12 11 10 29 29 H 0.97005 * 119.99820 * 0.02562 * 13 12 11 30 30 H 1.09000 * 109.47223 * 60.00290 * 16 14 13 31 31 H 1.08997 * 109.47305 * 299.99950 * 16 14 13 32 32 H 1.09002 * 112.85017 * 314.66753 * 17 16 14 33 33 H 1.08992 * 113.61675 * 254.61398 * 18 17 16 34 34 H 1.09000 * 113.60973 * 25.51686 * 18 17 16 35 35 H 1.09005 * 113.62125 * 220.02158 * 19 18 17 36 36 H 1.09003 * 113.61268 * 89.11946 * 19 18 17 37 37 H 1.08999 * 113.61567 * 334.48261 * 20 17 16 38 38 H 1.09000 * 113.61379 * 105.30384 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0024 12 6 6.3814 -3.5163 -0.0017 13 7 7.8217 -3.2486 -0.0036 14 6 8.6975 -4.2731 -0.0029 15 8 8.2932 -5.4165 -0.0011 16 6 10.1791 -3.9976 -0.0042 17 6 10.9441 -5.3227 -0.0037 18 6 11.1631 -5.9082 -1.4087 19 6 12.5751 -6.3024 -0.9357 20 6 12.4702 -5.1529 0.0804 21 1 -0.4850 0.8401 0.0004 22 1 3.8646 -0.3621 -0.0014 23 1 3.8483 -3.0427 -0.8908 24 1 3.8491 -3.0422 0.8892 25 1 5.8803 -1.6194 0.8872 26 1 5.8790 -1.6201 -0.8928 27 1 6.1174 -4.0886 -0.8910 28 1 6.1186 -4.0871 0.8889 29 1 8.1450 -2.3341 -0.0046 30 1 10.4430 -3.4250 0.8849 31 1 10.4419 -3.4272 -0.8950 32 1 10.5447 -6.0417 0.7116 33 1 10.5217 -6.7608 -1.6313 34 1 11.1611 -5.1579 -2.1995 35 1 13.3470 -6.1493 -1.6900 36 1 12.6217 -7.2893 -0.4753 37 1 12.8250 -4.1966 -0.3040 38 1 12.8832 -5.3949 1.0597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156185367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:07 Heat of formation + Delta-G solvation = -23.318283 kcal Electronic energy + Delta-G solvation = -16424.781163 eV Core-core repulsion = 13688.548748 eV Total energy + Delta-G solvation = -2736.232415 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11786 -38.49677 -36.13840 -34.44585 -32.14532 -30.99079 -29.66003 -25.88104 -25.62605 -23.69110 -22.10471 -21.31607 -20.30296 -19.62853 -17.63558 -16.95659 -16.24676 -15.93979 -15.54904 -14.84117 -14.63668 -14.47192 -13.92367 -13.46259 -13.25064 -12.82001 -12.72713 -12.43534 -12.13072 -12.01990 -11.71399 -11.19964 -11.04521 -10.92873 -10.84305 -10.71612 -10.59024 -10.46406 -10.17914 -9.80923 -9.60285 -9.09111 -8.91536 -7.25748 -5.77960 -3.14117 2.59504 3.12290 3.35265 3.37538 3.43433 4.27866 4.35567 4.43048 4.57385 4.58758 4.78830 4.95135 5.07051 5.18944 5.21535 5.30481 5.42393 5.46659 5.50315 5.52660 5.60476 5.65144 5.79487 5.82818 5.92428 5.96102 5.99685 6.14073 6.24727 6.41011 6.67716 6.70880 7.43796 7.98238 8.17500 8.40839 9.19552 9.91614 10.11156 11.40418 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.066884 B = 0.003155 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.537300 B = 8873.110768 C = 9145.247613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.141 4.141 12 C 0.122 3.878 13 N -0.732 5.732 14 C 0.509 3.491 15 O -0.540 6.540 16 C -0.133 4.133 17 C -0.094 4.094 18 C -0.135 4.135 19 C -0.143 4.143 20 C -0.139 4.139 21 H 0.260 0.740 22 H 0.360 0.640 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.399 0.601 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.538 -7.404 -0.652 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.002 4.002 13 N -0.384 5.384 14 C 0.296 3.704 15 O -0.417 6.417 16 C -0.173 4.173 17 C -0.113 4.113 18 C -0.172 4.172 19 C -0.181 4.181 20 C -0.176 4.176 21 H 0.070 0.930 22 H 0.193 0.807 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.233 0.767 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.981 -8.326 -0.650 27.290 hybrid contribution 0.582 1.802 0.009 1.893 sum 26.563 -6.524 -0.640 27.360 Atomic orbital electron populations 1.69703 1.05107 1.25850 1.57516 1.24697 0.95280 0.97274 1.02032 0.86508 0.79145 0.84884 0.77737 1.21067 1.21692 1.20392 1.19076 0.80577 0.94840 1.43065 0.89144 1.42690 1.04124 1.02160 1.91304 1.20499 0.87692 0.89496 0.99069 1.21991 0.97172 0.96285 1.02517 1.21320 0.78506 0.97773 1.02599 1.46137 1.07149 1.09415 1.75661 1.20711 0.88701 0.85144 0.75881 1.90699 1.80412 1.21401 1.49213 1.21717 0.91626 0.99712 1.04228 1.22332 0.94028 0.95989 0.98953 1.22987 0.96625 1.01194 0.96428 1.22846 0.97533 0.98692 0.98991 1.22983 0.95814 0.99103 0.99722 0.93024 0.80699 0.95180 0.95228 0.91397 0.91381 0.91288 0.91288 0.76677 0.88846 0.88936 0.88272 0.91164 0.90407 0.91582 0.90231 0.90123 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.04 27.73 -169.99 -4.71 17.33 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.76 -18.11 5.41 -59.91 -0.32 -18.43 16 10 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 11 C -0.14 -2.00 5.44 -26.73 -0.15 -2.15 16 12 C 0.12 1.59 5.67 -4.04 -0.02 1.56 16 13 N -0.73 -7.86 5.56 -60.30 -0.33 -8.19 16 14 C 0.51 5.96 7.83 -10.98 -0.09 5.87 16 15 O -0.54 -8.54 15.79 5.56 0.09 -8.45 16 16 C -0.13 -1.04 5.53 -27.88 -0.15 -1.20 16 17 C -0.09 -0.80 3.11 -89.80 -0.28 -1.08 16 18 C -0.13 -1.14 7.65 -25.77 -0.20 -1.34 16 19 C -0.14 -0.99 8.09 -25.78 -0.21 -1.20 16 20 C -0.14 -0.91 7.64 -25.92 -0.20 -1.11 16 21 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 22 H 0.36 8.28 5.53 -40.82 -0.23 8.05 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.57 7.87 -51.93 -0.41 0.17 16 32 H 0.10 1.02 7.73 -51.93 -0.40 0.61 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -33.79 313.94 -7.81 -41.59 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.46 Total: 5.05 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.57 Total: -4.83 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.12 Total: -55.42 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.79 -7.81 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156185367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.276 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds