Wall clock time and date at job start Sun Mar 29 2020 22:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.21283 * 120.00164 * 228.79864 * 3 2 1 5 5 N 1.34777 * 120.00306 * 48.79952 * 3 2 1 6 6 C 1.46498 * 120.00546 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47258 * 179.97438 * 6 5 3 8 8 C 1.53008 * 109.47073 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47079 * 180.02562 * 8 7 6 10 10 C 1.36935 * 119.99905 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00036 * 0.02562 * 10 9 8 12 12 C 1.38810 * 120.00112 * 179.97438 * 10 9 8 13 13 N 1.31616 * 120.00110 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99984 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47473 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47008 * 120.00135 * 14 12 10 17 17 H 1.48494 * 109.47066 * 240.00078 * 14 12 10 18 18 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 19 19 C 1.53781 * 87.08260 * 220.02231 * 18 2 1 20 20 C 1.53786 * 87.17350 * 25.39213 * 19 18 2 21 21 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 22 22 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 23 23 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 24 24 H 0.97001 * 119.99598 * 0.02562 * 5 3 2 25 25 H 1.08998 * 109.46877 * 300.00500 * 6 5 3 26 26 H 1.09002 * 109.47037 * 59.99656 * 6 5 3 27 27 H 1.08998 * 109.47708 * 300.00143 * 7 6 5 28 28 H 1.09002 * 109.47071 * 60.00462 * 7 6 5 29 29 H 1.08998 * 109.47124 * 300.00688 * 8 7 6 30 30 H 1.09002 * 109.46641 * 60.00387 * 8 7 6 31 31 H 0.96999 * 119.99987 * 0.02562 * 9 8 7 32 32 H 0.96999 * 120.00254 * 179.97438 * 13 12 10 33 33 H 1.09001 * 113.61250 * 105.47049 * 18 2 1 34 34 H 1.08997 * 113.61225 * 334.56890 * 18 2 1 35 35 H 1.09002 * 113.61445 * 139.98212 * 19 18 2 36 36 H 1.09002 * 113.61408 * 270.79943 * 19 18 2 37 37 H 1.08993 * 113.61491 * 89.15923 * 20 19 18 38 38 H 1.09000 * 113.61138 * 220.06261 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7903 5 7 1.6684 2.3083 0.8782 6 6 2.2369 3.6585 0.8779 7 6 1.5590 4.4976 1.9628 8 6 2.1532 5.9075 1.9629 9 7 1.5045 6.7108 3.0022 10 6 1.8751 8.0156 3.1902 11 1 2.6454 8.4526 2.5719 12 6 1.2602 8.7769 4.1746 13 7 0.3212 8.2445 4.9276 14 14 1.7662 10.5566 4.4314 15 1 2.8352 10.9119 3.4637 16 1 0.5923 11.4407 4.2182 17 1 2.2731 10.7321 5.8161 18 6 2.1460 -0.9281 -1.0601 19 6 3.1923 -1.3136 -0.0011 20 6 2.1479 -0.9296 1.0604 21 1 -0.3634 -1.0080 0.1995 22 1 -0.3634 0.6770 0.7732 23 1 -0.3633 0.3312 -0.9729 24 1 0.9704 2.0761 1.5105 25 1 3.3070 3.6022 1.0771 26 1 2.0724 4.1217 -0.0950 27 1 0.4890 4.5539 1.7632 28 1 1.7232 4.0345 2.9358 29 1 3.2232 5.8509 2.1627 30 1 1.9894 6.3708 0.9899 31 1 0.8125 6.3184 3.5572 32 1 -0.1083 8.7764 5.6158 33 1 2.5650 -0.3971 -1.9149 34 1 1.4945 -1.7523 -1.3505 35 1 3.4443 -2.3741 -0.0021 36 1 4.0717 -0.6696 -0.0014 37 1 1.4969 -1.7542 1.3508 38 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164008744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:34 Heat of formation + Delta-G solvation = -23.106791 kcal Electronic energy + Delta-G solvation = -16849.520214 eV Core-core repulsion = 14113.296970 eV Total energy + Delta-G solvation = -2736.223244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77974 -37.75869 -35.93036 -34.36914 -32.07607 -30.49195 -29.28034 -25.97174 -25.52841 -23.94265 -22.60440 -21.34827 -21.13653 -19.08191 -17.07594 -16.60310 -16.13135 -15.76856 -15.11206 -14.87498 -14.45714 -14.10376 -13.63265 -13.42362 -13.28841 -12.95280 -12.81781 -12.56176 -12.29745 -11.69844 -11.54892 -11.15441 -10.95741 -10.93344 -10.77940 -10.63503 -10.55034 -10.48148 -10.05646 -9.78740 -9.64773 -9.03639 -8.89085 -6.94132 -5.77990 -3.06900 2.56758 3.12156 3.43284 3.49084 3.51368 4.18611 4.31522 4.48735 4.58775 4.59445 4.80042 5.12044 5.17543 5.30531 5.36853 5.40628 5.42551 5.51472 5.57047 5.62759 5.67479 5.76407 5.86566 5.96653 6.00430 6.06251 6.15612 6.20153 6.31419 6.47435 6.78330 6.82588 7.49163 7.70139 8.20196 8.40994 9.52213 10.09235 10.43993 11.45125 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060775 B = 0.003433 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.608102 B = 8154.972520 C = 8334.200110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C 0.535 3.465 4 O -0.540 6.540 5 N -0.724 5.724 6 C 0.122 3.878 7 C -0.137 4.137 8 C 0.156 3.844 9 N -0.734 5.734 10 C -0.240 4.240 11 H 0.072 0.928 12 C -0.015 4.015 13 N -0.934 5.934 14 Si 0.908 3.092 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 C -0.117 4.117 19 C -0.142 4.142 20 C -0.122 4.122 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.400 0.600 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.383 0.617 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -20.498 -8.702 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 C 0.320 3.680 4 O -0.417 6.417 5 N -0.375 5.375 6 C -0.002 4.002 7 C -0.175 4.175 8 C 0.028 3.972 9 N -0.378 5.378 10 C -0.371 4.371 11 H 0.090 0.910 12 C -0.211 4.211 13 N -0.583 5.583 14 Si 0.739 3.261 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 C -0.155 4.155 19 C -0.179 4.179 20 C -0.160 4.160 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.235 0.765 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.189 -20.094 -9.296 22.172 hybrid contribution -0.417 0.847 0.773 1.220 sum 0.772 -19.248 -8.523 21.065 Atomic orbital electron populations 1.21732 0.92261 1.02653 1.02595 1.22015 0.96601 0.92458 1.00616 1.19922 0.82067 0.85729 0.80259 1.90684 1.31155 1.80528 1.39299 1.46053 1.41646 1.12472 1.37353 1.21366 0.98140 0.80724 0.99944 1.21942 1.00662 0.96897 0.98050 1.20523 0.95415 0.88369 0.92887 1.42347 1.45759 1.10312 1.39408 1.19299 1.16317 0.87606 1.13847 0.91031 1.24754 0.99019 0.98531 0.98788 1.69668 1.28506 1.36073 1.24075 0.86093 0.77629 0.84817 0.77533 1.20492 1.21839 1.21831 1.22830 0.97607 0.97856 0.97210 1.22843 0.97583 1.01466 0.96013 1.22997 0.98255 0.98347 0.96403 0.91423 0.92068 0.91874 0.76500 0.91400 0.91373 0.91300 0.91316 0.96051 0.96043 0.78306 0.93553 0.90084 0.89559 0.91264 0.89759 0.89051 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.12 37.15 0.34 -0.67 16 2 C -0.11 -1.07 1.26 -154.76 -0.20 -1.27 16 3 C 0.53 6.92 6.66 -10.99 -0.07 6.85 16 4 O -0.54 -9.02 15.76 5.55 0.09 -8.93 16 5 N -0.72 -8.66 5.44 -60.30 -0.33 -8.99 16 6 C 0.12 1.70 5.67 -4.05 -0.02 1.68 16 7 C -0.14 -2.12 5.44 -26.73 -0.15 -2.27 16 8 C 0.16 3.15 6.26 -4.04 -0.03 3.12 16 9 N -0.73 -18.82 5.60 -59.90 -0.34 -19.15 16 10 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 11 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 12 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 13 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 14 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 C -0.12 -1.07 7.02 -25.92 -0.18 -1.25 16 19 C -0.14 -1.25 7.73 -25.92 -0.20 -1.45 16 20 C -0.12 -0.99 7.23 -25.82 -0.19 -1.17 16 21 H 0.07 0.40 7.95 -51.93 -0.41 -0.02 16 22 H 0.06 0.43 7.00 -51.93 -0.36 0.06 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.40 3.87 7.36 -40.82 -0.30 3.57 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 10.20 7.67 -40.82 -0.31 9.88 16 32 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.08 0.89 7.43 -51.93 -0.39 0.51 16 34 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.09 0.57 7.97 -51.93 -0.41 0.15 16 38 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 313.54 15.07 4.73 4.73 Total: -1.00 -32.68 313.54 -7.47 -40.15 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.38 Total: 6.26 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.94 Total: -3.93 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.06 Total: -55.81 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.68 -7.47 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164008744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.041 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds