Wall clock time and date at job start Sun Mar 29 2020 22:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00462 * 2 1 4 4 C 1.52998 * 109.82200 * 240.88394 * 3 2 1 5 5 C 1.54379 * 109.83198 * 119.99486 * 3 2 1 6 6 C 1.55306 * 102.25204 * 219.13044 * 5 3 2 7 7 C 1.54944 * 100.94236 * 34.13084 * 6 5 3 8 8 H 1.09001 * 110.30578 * 82.57381 * 7 6 5 9 9 C 1.53000 * 110.31149 * 204.63911 * 7 6 5 10 10 C 1.52998 * 109.47413 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46828 * 60.00083 * 9 7 6 12 12 O 1.42900 * 109.47222 * 300.00479 * 9 7 6 13 13 C 1.34922 * 117.00165 * 180.02562 * 12 9 7 14 14 H 1.08001 * 120.00176 * 359.97438 * 13 12 9 15 15 C 1.38636 * 120.00046 * 179.97438 * 13 12 9 16 16 N 1.31584 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00060 * 179.72210 * 15 13 12 18 18 H 1.48494 * 109.47228 * 180.27624 * 17 15 13 19 19 H 1.48506 * 109.47130 * 300.27812 * 17 15 13 20 20 H 1.48493 * 109.46907 * 60.27400 * 17 15 13 21 21 O 1.43242 * 109.82811 * 1.85952 * 3 2 1 22 22 H 1.08002 * 119.99473 * 0.02562 * 1 2 3 23 23 H 1.07993 * 120.00453 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.99473 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.46920 * 299.11300 * 4 3 2 26 26 H 1.09003 * 109.47482 * 59.10949 * 4 3 2 27 27 H 1.08997 * 109.47253 * 179.11145 * 4 3 2 28 28 H 1.09003 * 110.84706 * 100.94012 * 5 3 2 29 29 H 1.08999 * 110.85015 * 337.31859 * 5 3 2 30 30 H 1.09005 * 111.12474 * 276.21409 * 6 5 3 31 31 H 1.09001 * 111.12749 * 152.05276 * 6 5 3 32 32 H 1.08994 * 109.47143 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.46711 * 300.00303 * 10 9 7 34 34 H 1.09004 * 109.46918 * 59.99940 * 10 9 7 35 35 H 1.08993 * 109.47608 * 299.99932 * 11 9 7 36 36 H 1.09001 * 109.47250 * 60.00270 * 11 9 7 37 37 H 1.09008 * 109.46998 * 180.02562 * 11 9 7 38 38 H 0.97005 * 119.99693 * 359.72009 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9296 1.4041 -1.2575 5 6 2.9542 1.3955 1.2577 6 6 2.8069 2.8886 1.6591 7 6 1.3388 3.1609 1.2453 8 1 0.6570 2.8235 2.0259 9 6 1.1326 4.6516 0.9693 10 6 -0.3217 4.8988 0.5634 11 6 2.0610 5.0936 -0.1636 12 8 1.4312 5.4003 2.1493 13 6 1.2981 6.7408 2.0743 14 1 0.9788 7.2010 1.1509 15 6 1.5711 7.5276 3.1826 16 7 1.9606 6.9671 4.3076 17 14 1.3942 9.3842 3.0765 18 1 1.7487 9.9908 4.3848 19 1 2.3026 9.9088 2.0253 20 1 -0.0092 9.7290 2.7350 21 8 1.1403 2.3993 0.0437 22 1 -0.5399 0.9354 -0.0004 23 1 -0.5400 -0.9352 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 3.6507 0.5867 -1.2673 26 1 2.2952 1.3395 -2.1415 27 1 3.4597 2.3564 -1.2594 28 1 3.9907 1.1590 1.0170 29 1 2.5794 0.7431 2.0463 30 1 3.4969 3.5168 1.0957 31 1 2.9439 3.0223 2.7322 32 1 -0.4686 5.9609 0.3673 33 1 -0.5497 4.3277 -0.3365 34 1 -0.9828 4.5840 1.3709 35 1 3.0970 4.9177 0.1259 36 1 1.8333 4.5226 -1.0637 37 1 1.9145 6.1558 -0.3599 38 1 2.0527 6.0031 4.3626 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224382138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:55 Heat of formation + Delta-G solvation = -71.375681 kcal Electronic energy + Delta-G solvation = -18518.508502 eV Core-core repulsion = 15747.899411 eV Total energy + Delta-G solvation = -2770.609091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00740 -37.23514 -34.01684 -32.30455 -31.88015 -30.53710 -29.62279 -26.59778 -25.77598 -24.01917 -22.49684 -21.19536 -19.61797 -18.85998 -17.20687 -16.56841 -15.83501 -14.91747 -14.73121 -14.19502 -13.79135 -13.61804 -13.27337 -12.96174 -12.78436 -12.51167 -12.23528 -11.97202 -11.73018 -11.54826 -11.24849 -11.19214 -11.00178 -10.74614 -10.60864 -10.32485 -10.27794 -10.08368 -9.79523 -9.59828 -9.38489 -9.13392 -8.79928 -7.91187 -6.21783 -3.52054 2.34762 3.42664 3.47372 3.64715 3.84342 4.52208 4.71597 4.87902 4.97617 5.25521 5.28489 5.39847 5.48155 5.52086 5.61356 5.71410 5.76325 5.83402 5.88185 5.98622 6.02019 6.15651 6.19273 6.26520 6.39571 6.41711 6.49284 6.62993 6.63202 6.67305 6.78786 6.90334 7.03677 7.12275 7.48687 7.80025 8.91715 9.51407 10.14868 11.25577 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.042518 B = 0.006347 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.383079 B = 4410.482392 C = 4510.595561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.170 4.170 3 C 0.132 3.868 4 C -0.146 4.146 5 C -0.144 4.144 6 C -0.141 4.141 7 C 0.101 3.899 8 H 0.068 0.932 9 C 0.130 3.870 10 C -0.160 4.160 11 C -0.160 4.160 12 O -0.304 6.304 13 C -0.433 4.433 14 H 0.054 0.946 15 C -0.009 4.009 16 N -0.918 5.918 17 Si 1.087 2.913 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.290 1.290 21 O -0.359 6.359 22 H 0.109 0.891 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 -11.742 -9.018 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.093 3.907 4 C -0.203 4.203 5 C -0.181 4.181 6 C -0.178 4.178 7 C 0.044 3.956 8 H 0.086 0.914 9 C 0.089 3.911 10 C -0.217 4.217 11 C -0.218 4.218 12 O -0.221 6.221 13 C -0.512 4.512 14 H 0.072 0.928 15 C -0.209 4.209 16 N -0.558 5.558 17 Si 0.915 3.085 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.217 1.217 21 O -0.279 6.279 22 H 0.128 0.872 23 H 0.110 0.890 24 H 0.129 0.871 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.742 -10.369 -8.153 13.211 hybrid contribution -0.187 -1.463 -1.044 1.807 sum 0.555 -11.832 -9.197 14.996 Atomic orbital electron populations 1.23873 0.96280 1.02071 0.98924 1.23140 0.96521 0.97238 1.01886 1.20914 0.88628 0.85698 0.95507 1.22002 0.99041 1.02196 0.97055 1.23175 0.99969 0.98093 0.96882 1.23225 0.97177 0.94186 1.03205 1.22641 0.95880 0.91189 0.85905 0.91380 1.20879 0.93360 0.89116 0.87710 1.22238 0.97549 1.01698 1.00250 1.22280 0.99790 1.01368 0.98335 1.85350 1.87659 1.18780 1.30268 1.21544 1.49175 0.80460 1.00039 0.92784 1.25941 0.97401 1.05989 0.91559 1.70572 1.45228 1.13765 1.26222 0.83212 0.76155 0.73214 0.75955 1.20448 1.21689 1.21683 1.88354 1.56972 1.40505 1.42090 0.87238 0.88990 0.87053 0.91880 0.92144 0.91777 0.90305 0.90771 0.89902 0.89619 0.92355 0.93190 0.93159 0.92941 0.93081 0.92478 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 14.09 29.01 0.41 -1.78 16 2 C -0.17 -2.10 8.65 -36.03 -0.31 -2.41 16 3 C 0.13 1.84 1.23 -91.05 -0.11 1.72 16 4 C -0.15 -1.77 8.71 37.16 0.32 -1.45 16 5 C -0.14 -1.95 6.08 -24.79 -0.15 -2.10 16 6 C -0.14 -2.43 6.16 -24.48 -0.15 -2.58 16 7 C 0.10 1.92 2.89 -25.71 -0.07 1.84 16 8 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 9 C 0.13 2.85 0.67 -90.62 -0.06 2.79 16 10 C -0.16 -3.34 8.29 37.16 0.31 -3.03 16 11 C -0.16 -3.27 7.96 37.16 0.30 -2.97 16 12 O -0.30 -8.31 8.51 -16.49 -0.14 -8.45 16 13 C -0.43 -12.47 8.38 30.88 0.26 -12.21 16 14 H 0.05 1.51 6.03 -52.49 -0.32 1.20 16 15 C -0.01 -0.28 5.49 -17.51 -0.10 -0.37 16 16 N -0.92 -29.00 13.70 55.48 0.76 -28.24 16 17 Si 1.09 25.69 29.92 -169.99 -5.09 20.60 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 21 O -0.36 -6.09 7.55 -35.23 -0.27 -6.36 16 22 H 0.11 1.57 6.86 -52.49 -0.36 1.21 16 23 H 0.09 0.95 8.06 -52.49 -0.42 0.52 16 24 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.92 7.82 -51.93 -0.41 0.51 16 29 H 0.07 0.96 7.84 -51.93 -0.41 0.56 16 30 H 0.08 1.48 5.89 -51.93 -0.31 1.18 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.06 1.27 6.92 -51.93 -0.36 0.91 16 33 H 0.05 0.93 7.84 -51.93 -0.41 0.52 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 1.06 6.14 -51.93 -0.32 0.74 16 36 H 0.05 0.93 7.62 -51.93 -0.40 0.54 16 37 H 0.06 1.23 6.93 -51.92 -0.36 0.87 16 38 H 0.27 8.81 7.97 -40.82 -0.33 8.48 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -31.60 302.43 -5.67 -37.27 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.14 Total: 3.16 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 0.64 Total: -22.55 kcal Atomic # 7 Polarization: -29.00 SS G_CDS: 0.76 Total: -28.24 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.41 Total: -14.81 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.60 -5.67 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.102 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds