Wall clock time and date at job start Sun Mar 29 2020 22:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99787 * 2 1 4 4 C 1.53001 * 109.99188 * 118.91722 * 3 2 1 5 5 C 1.54103 * 109.87403 * 240.00151 * 3 2 1 6 6 C 1.54812 * 104.18641 * 117.39766 * 5 3 2 7 7 C 1.54994 * 102.09184 * 339.11224 * 6 5 3 8 8 H 1.08996 * 110.62466 * 278.36643 * 7 6 5 9 9 C 1.53006 * 110.61750 * 155.52596 * 7 6 5 10 10 C 1.52997 * 109.47164 * 185.00322 * 9 7 6 11 11 C 1.52997 * 109.47127 * 305.00485 * 9 7 6 12 12 O 1.42906 * 109.46752 * 65.00078 * 9 7 6 13 13 C 1.34927 * 116.99722 * 180.02562 * 12 9 7 14 14 H 1.07997 * 119.99814 * 359.97438 * 13 12 9 15 15 C 1.38634 * 120.00047 * 180.02562 * 13 12 9 16 16 N 1.31582 * 119.99607 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00135 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47294 * 119.99580 * 17 15 13 20 20 H 1.48500 * 109.47006 * 239.99420 * 17 15 13 21 21 O 1.43750 * 109.87822 * 357.83051 * 3 2 1 22 22 H 1.07996 * 120.00100 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.99792 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.00114 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46743 * 181.08319 * 4 3 2 26 26 H 1.08996 * 109.46669 * 301.07919 * 4 3 2 27 27 H 1.09000 * 109.46953 * 61.08184 * 4 3 2 28 28 H 1.08990 * 110.48879 * 358.71740 * 5 3 2 29 29 H 1.09003 * 110.59850 * 236.12316 * 5 3 2 30 30 H 1.09000 * 110.90473 * 220.92098 * 6 5 3 31 31 H 1.08991 * 110.91136 * 97.31744 * 6 5 3 32 32 H 1.09001 * 109.47375 * 59.99966 * 10 9 7 33 33 H 1.09002 * 109.46777 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47140 * 299.99948 * 10 9 7 35 35 H 1.09004 * 109.47261 * 59.99697 * 11 9 7 36 36 H 1.09002 * 109.47153 * 179.97438 * 11 9 7 37 37 H 1.09001 * 109.47289 * 299.99953 * 11 9 7 38 38 H 0.97000 * 119.99836 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9271 1.4106 1.2585 5 6 2.9530 1.3966 -1.2551 6 6 2.3956 2.6173 -2.0270 7 6 0.9654 2.7450 -1.4434 8 1 0.2876 2.0448 -1.9316 9 6 0.4510 4.1789 -1.5869 10 6 -0.9069 4.3054 -0.8935 11 6 1.4459 5.1447 -0.9402 12 8 0.3098 4.4978 -2.9728 13 6 -0.1368 5.7348 -3.2742 14 1 -0.3700 6.4323 -2.4833 15 6 -0.2975 6.1100 -4.5991 16 7 -0.0138 5.2600 -5.5626 17 14 -0.9152 7.8228 -5.0164 18 1 -1.1594 8.5801 -3.7626 19 1 0.1033 8.5311 -5.8326 20 1 -2.1810 7.7186 -5.7859 21 8 1.1380 2.4038 -0.0512 22 1 -0.5400 0.9353 0.0004 23 1 -0.5399 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 3.4531 2.3653 1.2593 26 1 2.2917 1.3452 2.1417 27 1 3.6518 0.5964 1.2711 28 1 2.8606 0.4913 -1.8549 29 1 3.9934 1.5641 -0.9765 30 1 2.3622 2.4180 -3.0981 31 1 2.9826 3.5113 -1.8173 32 1 -0.7992 4.0621 0.1636 33 1 -1.2735 5.3268 -0.9961 34 1 -1.6157 3.6173 -1.3543 35 1 2.4134 5.0546 -1.4342 36 1 1.0797 6.1662 -1.0428 37 1 1.5537 4.9014 0.1169 38 1 -0.1258 5.5226 -6.4896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224382144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:59 Heat of formation + Delta-G solvation = -63.938903 kcal Electronic energy + Delta-G solvation = -18480.093897 eV Core-core repulsion = 15709.807289 eV Total energy + Delta-G solvation = -2770.286608 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94203 -37.14368 -33.77881 -32.19924 -31.74103 -30.74117 -29.69186 -26.51737 -25.71944 -24.38227 -22.49292 -21.06017 -19.39131 -18.90232 -16.97084 -16.41450 -15.73260 -14.86274 -14.75718 -14.17730 -13.94054 -13.55969 -13.00700 -12.84428 -12.66667 -12.43783 -12.20234 -11.83110 -11.64531 -11.29988 -11.17628 -11.07870 -11.00027 -10.91005 -10.74971 -10.66617 -10.29130 -10.18102 -9.95523 -9.55370 -9.32792 -9.05965 -8.75303 -7.93821 -5.91038 -3.52586 2.41748 3.32556 3.36040 3.40172 3.95761 4.41948 4.83264 4.97184 4.98538 5.33724 5.35083 5.43843 5.49261 5.57460 5.69145 5.80147 5.83693 5.88579 5.93359 6.08441 6.12626 6.19728 6.22242 6.33945 6.45263 6.50695 6.56250 6.67859 6.72642 6.74429 6.86600 6.98206 7.09270 7.19614 7.47159 7.57477 8.48183 9.53862 10.20560 11.30310 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.040656 B = 0.006361 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.534674 B = 4401.056643 C = 4438.373075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.128 3.872 4 C -0.135 4.135 5 C -0.143 4.143 6 C -0.143 4.143 7 C 0.099 3.901 8 H 0.070 0.930 9 C 0.126 3.874 10 C -0.161 4.161 11 C -0.163 4.163 12 O -0.280 6.280 13 C -0.346 4.346 14 H 0.065 0.935 15 C 0.021 3.979 16 N -0.891 5.891 17 Si 0.920 3.080 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.284 1.284 21 O -0.356 6.356 22 H 0.109 0.891 23 H 0.093 0.907 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.625 -7.930 10.989 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.196 4.196 3 C 0.088 3.912 4 C -0.192 4.192 5 C -0.181 4.181 6 C -0.180 4.180 7 C 0.042 3.958 8 H 0.088 0.912 9 C 0.086 3.914 10 C -0.219 4.219 11 C -0.220 4.220 12 O -0.195 6.195 13 C -0.425 4.425 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.535 5.535 17 Si 0.748 3.252 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.210 1.210 21 O -0.276 6.276 22 H 0.127 0.873 23 H 0.111 0.889 24 H 0.128 0.872 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.567 -7.962 10.861 14.220 hybrid contribution -0.359 0.822 -0.303 0.947 sum 4.208 -7.140 10.558 13.422 Atomic orbital electron populations 1.23908 0.96285 1.02205 0.98840 1.23306 0.96620 0.97723 1.01944 1.20970 0.88765 0.85632 0.95822 1.21809 0.98772 1.02168 0.96460 1.22997 0.99430 0.99678 0.95980 1.23136 0.96258 0.97619 1.00985 1.22774 0.96159 0.96182 0.80678 0.91203 1.20858 0.93287 0.90855 0.86438 1.22262 0.98275 1.02082 0.99273 1.22335 0.99961 1.00263 0.99461 1.85667 1.84940 1.32552 1.16363 1.20739 1.41384 0.88664 0.91695 0.91725 1.24891 0.99515 0.98392 0.94864 1.70027 1.50346 1.34204 0.98905 0.85956 0.78289 0.82505 0.78434 1.19984 1.21014 1.21015 1.88824 1.63612 1.49716 1.25415 0.87259 0.88899 0.87198 0.91744 0.92166 0.91672 0.90978 0.90770 0.89679 0.89993 0.93183 0.92420 0.93017 0.92585 0.92547 0.93162 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 13.68 29.01 0.40 -1.95 16 2 C -0.18 -2.30 8.54 -36.03 -0.31 -2.60 16 3 C 0.13 1.80 1.16 -91.19 -0.11 1.69 16 4 C -0.13 -1.57 8.66 37.16 0.32 -1.25 16 5 C -0.14 -1.99 6.26 -25.20 -0.16 -2.15 16 6 C -0.14 -2.52 6.28 -24.72 -0.16 -2.68 16 7 C 0.10 1.91 2.39 -25.67 -0.06 1.85 16 8 H 0.07 1.42 7.83 -51.93 -0.41 1.01 16 9 C 0.13 2.78 0.69 -90.62 -0.06 2.72 16 10 C -0.16 -3.33 8.27 37.16 0.31 -3.02 16 11 C -0.16 -3.30 7.89 37.16 0.29 -3.00 16 12 O -0.28 -7.74 9.25 -16.50 -0.15 -7.89 16 13 C -0.35 -9.87 8.39 30.88 0.26 -9.61 16 14 H 0.07 1.77 6.03 -52.49 -0.32 1.45 16 15 C 0.02 0.61 5.49 -17.51 -0.10 0.51 16 16 N -0.89 -27.68 13.67 55.48 0.76 -26.92 16 17 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 O -0.36 -6.09 7.93 -35.23 -0.28 -6.37 16 22 H 0.11 1.67 6.65 -52.49 -0.35 1.32 16 23 H 0.09 1.05 8.06 -52.49 -0.42 0.62 16 24 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 29 H 0.07 0.89 7.70 -51.93 -0.40 0.49 16 30 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 31 H 0.08 1.48 5.66 -51.93 -0.29 1.18 16 32 H 0.05 0.92 7.76 -51.93 -0.40 0.52 16 33 H 0.06 1.22 6.93 -51.93 -0.36 0.86 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.12 6.02 -51.93 -0.31 0.81 16 36 H 0.06 1.18 6.92 -51.93 -0.36 0.82 16 37 H 0.05 0.91 7.71 -51.93 -0.40 0.51 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -31.40 301.45 -5.62 -37.02 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.10 Total: 2.03 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 0.63 Total: -19.50 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.76 Total: -26.92 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.43 Total: -14.26 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.40 -5.62 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.918 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds