Wall clock time and date at job start Sun Mar 29 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99787 * 2 1 4 4 C 1.53001 * 109.99188 * 118.91722 * 3 2 1 5 5 C 1.54103 * 109.87403 * 240.00151 * 3 2 1 6 6 C 1.54812 * 104.18641 * 117.39766 * 5 3 2 7 7 C 1.54994 * 102.09184 * 339.11224 * 6 5 3 8 8 H 1.08996 * 110.62466 * 278.36643 * 7 6 5 9 9 C 1.53006 * 110.61750 * 155.52596 * 7 6 5 10 10 C 1.52997 * 109.47164 * 185.00322 * 9 7 6 11 11 C 1.52997 * 109.47127 * 305.00485 * 9 7 6 12 12 O 1.42906 * 109.46752 * 65.00078 * 9 7 6 13 13 C 1.34927 * 116.99722 * 180.02562 * 12 9 7 14 14 H 1.07997 * 119.99814 * 359.97438 * 13 12 9 15 15 C 1.38634 * 120.00047 * 180.02562 * 13 12 9 16 16 N 1.31582 * 119.99607 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00135 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47294 * 119.99580 * 17 15 13 20 20 H 1.48500 * 109.47006 * 239.99420 * 17 15 13 21 21 O 1.43750 * 109.87822 * 357.83051 * 3 2 1 22 22 H 1.07996 * 120.00100 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.99792 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.00114 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46743 * 181.08319 * 4 3 2 26 26 H 1.08996 * 109.46669 * 301.07919 * 4 3 2 27 27 H 1.09000 * 109.46953 * 61.08184 * 4 3 2 28 28 H 1.08990 * 110.48879 * 358.71740 * 5 3 2 29 29 H 1.09003 * 110.59850 * 236.12316 * 5 3 2 30 30 H 1.09000 * 110.90473 * 220.92098 * 6 5 3 31 31 H 1.08991 * 110.91136 * 97.31744 * 6 5 3 32 32 H 1.09001 * 109.47375 * 59.99966 * 10 9 7 33 33 H 1.09002 * 109.46777 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47140 * 299.99948 * 10 9 7 35 35 H 1.09004 * 109.47261 * 59.99697 * 11 9 7 36 36 H 1.09002 * 109.47153 * 179.97438 * 11 9 7 37 37 H 1.09001 * 109.47289 * 299.99953 * 11 9 7 38 38 H 0.97000 * 119.99836 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9271 1.4106 1.2585 5 6 2.9530 1.3966 -1.2551 6 6 2.3956 2.6173 -2.0270 7 6 0.9654 2.7450 -1.4434 8 1 0.2876 2.0448 -1.9316 9 6 0.4510 4.1789 -1.5869 10 6 -0.9069 4.3054 -0.8935 11 6 1.4459 5.1447 -0.9402 12 8 0.3098 4.4978 -2.9728 13 6 -0.1368 5.7348 -3.2742 14 1 -0.3700 6.4323 -2.4833 15 6 -0.2975 6.1100 -4.5991 16 7 -0.0138 5.2600 -5.5626 17 14 -0.9152 7.8228 -5.0164 18 1 -1.1594 8.5801 -3.7626 19 1 0.1033 8.5311 -5.8326 20 1 -2.1810 7.7186 -5.7859 21 8 1.1380 2.4038 -0.0512 22 1 -0.5400 0.9353 0.0004 23 1 -0.5399 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 3.4531 2.3653 1.2593 26 1 2.2917 1.3452 2.1417 27 1 3.6518 0.5964 1.2711 28 1 2.8606 0.4913 -1.8549 29 1 3.9934 1.5641 -0.9765 30 1 2.3622 2.4180 -3.0981 31 1 2.9826 3.5113 -1.8173 32 1 -0.7992 4.0621 0.1636 33 1 -1.2735 5.3268 -0.9961 34 1 -1.6157 3.6173 -1.3543 35 1 2.4134 5.0546 -1.4342 36 1 1.0797 6.1662 -1.0428 37 1 1.5537 4.9014 0.1169 38 1 -0.1258 5.5226 -6.4896 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224382144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:58 Heat of formation + Delta-G solvation = -83.140784 kcal Electronic energy + Delta-G solvation = -18480.926553 eV Core-core repulsion = 15709.807289 eV Total energy + Delta-G solvation = -2771.119264 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29088 -38.94663 -35.25279 -33.96264 -33.05898 -32.50857 -30.93718 -28.18727 -27.35474 -26.19448 -23.80756 -22.29718 -20.95816 -20.22116 -19.07357 -17.82647 -17.30464 -16.40551 -16.21491 -15.76954 -15.38334 -15.18613 -14.76513 -14.20703 -13.91878 -13.83389 -13.37016 -13.32082 -13.08799 -13.00320 -12.84692 -12.78145 -12.63591 -12.47692 -12.24670 -12.08226 -11.83392 -11.72419 -11.56881 -11.20563 -10.78360 -10.57151 -10.19775 -10.07737 -8.11427 -5.77138 1.39817 1.40472 1.44910 1.55184 2.29361 2.72620 3.21967 3.66309 3.73423 3.84045 3.98826 4.01611 4.17561 4.21878 4.33804 4.44044 4.52848 4.58735 4.72359 4.80869 4.83644 4.89800 4.92579 4.95099 4.98734 5.10821 5.16278 5.20148 5.21055 5.31311 5.31866 5.48493 5.54844 5.69812 5.84360 6.18195 6.28850 7.33832 8.12713 9.13759 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.040656 B = 0.006361 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.534674 B = 4401.056643 C = 4438.373075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.116 3.884 4 C -0.131 4.131 5 C -0.133 4.133 6 C -0.145 4.145 7 C 0.108 3.892 8 H 0.050 0.950 9 C 0.111 3.889 10 C -0.153 4.153 11 C -0.152 4.152 12 O -0.316 6.316 13 C -0.348 4.348 14 H 0.072 0.928 15 C -0.044 4.044 16 N -0.941 5.941 17 Si 0.995 3.005 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.280 1.280 21 O -0.362 6.362 22 H 0.084 0.916 23 H 0.113 0.887 24 H 0.140 0.860 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -8.177 12.584 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.193 4.193 3 C 0.076 3.924 4 C -0.188 4.188 5 C -0.170 4.170 6 C -0.183 4.183 7 C 0.050 3.950 8 H 0.068 0.932 9 C 0.071 3.929 10 C -0.210 4.210 11 C -0.209 4.209 12 O -0.232 6.232 13 C -0.427 4.427 14 H 0.089 0.911 15 C -0.237 4.237 16 N -0.587 5.587 17 Si 0.818 3.182 18 H -0.183 1.183 19 H -0.204 1.204 20 H -0.206 1.206 21 O -0.282 6.282 22 H 0.102 0.898 23 H 0.132 0.868 24 H 0.158 0.842 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.387 -8.216 12.495 15.895 hybrid contribution -0.593 0.815 -0.704 1.229 sum 4.794 -7.401 11.791 14.724 Atomic orbital electron populations 1.23946 0.96771 1.02073 0.99827 1.23513 0.96498 0.98263 1.00995 1.21344 0.88681 0.85230 0.97104 1.21828 0.98793 1.03323 0.94847 1.22987 1.00569 0.98053 0.95392 1.23075 0.95707 0.99462 1.00018 1.22455 0.96468 0.93941 0.82121 0.93216 1.21220 0.94504 0.92982 0.84206 1.22168 0.97313 1.01130 1.00398 1.22213 0.99125 0.98972 1.00586 1.85609 1.85097 1.32442 1.20083 1.21119 1.40341 0.89121 0.92101 0.91051 1.26037 0.99981 1.02965 0.94681 1.70196 1.52389 1.36824 0.99325 0.84829 0.77634 0.77074 0.78617 1.18283 1.20400 1.20559 1.88806 1.64740 1.51138 1.23535 0.89807 0.86839 0.84243 0.91872 0.92154 0.88806 0.89945 0.88244 0.92085 0.90494 0.90910 0.93398 0.94068 0.92832 0.93699 0.90867 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.83 13.68 67.78 0.93 -3.90 16 2 C -0.17 -4.07 8.54 25.64 0.22 -3.86 16 3 C 0.12 2.98 1.16 -11.17 -0.01 2.96 16 4 C -0.13 -2.60 8.66 71.98 0.62 -1.98 16 5 C -0.13 -3.40 6.26 31.59 0.20 -3.20 16 6 C -0.14 -5.14 6.28 31.89 0.20 -4.94 16 7 C 0.11 4.18 2.39 31.28 0.07 4.26 16 8 H 0.05 2.11 7.83 -2.39 -0.02 2.09 16 9 C 0.11 4.93 0.69 -10.79 -0.01 4.92 16 10 C -0.15 -6.34 8.27 71.98 0.60 -5.74 16 11 C -0.15 -6.08 7.89 71.98 0.57 -5.52 16 12 O -0.32 -18.03 9.25 -81.96 -0.76 -18.79 16 13 C -0.35 -20.19 8.39 67.91 0.57 -19.62 16 14 H 0.07 3.92 6.03 -2.91 -0.02 3.91 16 15 C -0.04 -2.62 5.49 84.82 0.47 -2.15 16 16 N -0.94 -60.03 13.67 21.61 0.30 -59.73 16 17 Si 0.99 45.69 29.55 68.60 2.03 47.71 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 O -0.36 -12.01 7.93 -148.98 -1.18 -13.19 16 22 H 0.08 2.57 6.65 -2.91 -0.02 2.55 16 23 H 0.11 2.36 8.06 -2.91 -0.02 2.33 16 24 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.95 7.69 -2.39 -0.02 1.93 16 29 H 0.10 2.06 7.70 -2.39 -0.02 2.05 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.77 5.66 -2.39 -0.01 2.76 16 32 H 0.07 2.64 7.76 -2.39 -0.02 2.62 16 33 H 0.05 2.04 6.93 -2.39 -0.02 2.02 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 2.14 6.02 -2.38 -0.01 2.13 16 36 H 0.04 1.87 6.92 -2.39 -0.02 1.85 16 37 H 0.07 2.56 7.71 -2.39 -0.02 2.54 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.85 301.45 5.82 -63.03 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.02 Total: 19.73 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 4.42 Total: -38.77 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.30 Total: -59.73 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.94 Total: -31.98 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -68.85 5.82 -63.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.113 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds