Wall clock time and date at job start Sun Mar 29 2020 22:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46907 * 109.46887 * 2 1 4 4 C 1.46892 * 109.47495 * 240.00197 * 2 1 3 5 5 C 1.46902 * 109.47056 * 119.99643 * 2 1 3 6 6 C 1.52997 * 109.47040 * 62.01434 * 5 2 1 7 7 H 1.09004 * 109.46695 * 51.56540 * 6 5 2 8 8 C 1.50694 * 109.47148 * 171.55977 * 6 5 2 9 9 H 1.08000 * 120.00161 * 245.70747 * 8 6 5 10 10 C 1.37879 * 119.99674 * 65.71626 * 8 6 5 11 11 N 1.31506 * 120.00293 * 6.29312 * 10 8 6 12 12 Si 1.86800 * 119.99757 * 186.29073 * 10 8 6 13 13 H 1.48506 * 109.47019 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.47421 * 299.99983 * 12 10 8 15 15 H 1.48497 * 109.47171 * 59.99792 * 12 10 8 16 16 O 1.42893 * 109.47534 * 291.56722 * 6 5 2 17 17 C 1.35997 * 117.00213 * 149.99676 * 16 6 5 18 18 C 1.40293 * 125.95239 * 179.71174 * 17 16 6 19 19 C 1.35281 * 107.87248 * 179.82992 * 18 17 16 20 20 N 1.34956 * 107.82267 * 0.43165 * 19 18 17 21 21 H 0.97000 * 125.98503 * 179.72780 * 20 19 18 22 22 N 1.31103 * 125.95656 * 0.02785 * 17 16 6 23 23 H 1.08994 * 109.47306 * 287.37281 * 1 2 3 24 24 H 1.09004 * 109.47046 * 47.37257 * 1 2 3 25 25 H 1.08993 * 109.46918 * 167.36446 * 1 2 3 26 26 H 1.08995 * 109.46884 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47149 * 299.99854 * 3 2 1 28 28 H 1.08999 * 109.46893 * 59.99905 * 3 2 1 29 29 H 1.09002 * 109.46841 * 299.99799 * 4 2 1 30 30 H 1.08996 * 109.47692 * 59.99890 * 4 2 1 31 31 H 1.09002 * 109.47589 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47072 * 302.02212 * 5 2 1 33 33 H 1.09001 * 109.47214 * 182.01839 * 5 2 1 34 34 H 0.97005 * 119.99858 * 354.43481 * 11 10 8 35 35 H 1.08000 * 126.06580 * 0.02562 * 18 17 16 36 36 H 1.07997 * 126.09204 * 180.12864 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3851 0.0000 4 6 1.9588 -0.6924 -1.1994 5 6 1.9587 -0.6924 1.1995 6 6 1.4905 -2.1488 1.1745 7 1 1.7546 -2.5989 0.2175 8 6 2.1593 -2.9107 2.2894 9 1 2.8580 -3.7015 2.0598 10 6 1.8791 -2.5981 3.6028 11 7 0.9389 -1.7228 3.8842 12 14 2.8348 -3.4183 4.9823 13 1 2.3464 -2.9138 6.2909 14 1 2.6394 -4.8887 4.9140 15 1 4.2790 -3.1038 4.8390 16 8 0.0730 -2.1966 1.3482 17 6 -0.5868 -3.2299 0.7597 18 6 -1.9694 -3.4618 0.8134 19 6 -2.2303 -4.5825 0.1020 20 7 -1.0584 -5.0502 -0.3767 21 1 -0.9412 -5.8453 -0.9198 22 7 -0.0409 -4.1862 0.0481 23 1 -0.3633 0.3068 0.9807 24 1 -0.3633 0.6960 -0.7562 25 1 -0.3633 -1.0027 -0.2248 26 1 3.0486 1.3851 0.0005 27 1 1.5953 1.8989 -0.8900 28 1 1.5953 1.8989 0.8900 29 1 1.5955 -1.7201 -1.1994 30 1 1.5955 -0.1787 -2.0894 31 1 3.0488 -0.6928 -1.1991 32 1 1.5660 -0.1999 2.0891 33 1 3.0481 -0.6612 1.2178 34 1 0.4983 -1.2374 3.1691 35 1 -2.6968 -2.8519 1.3284 36 1 -3.2027 -5.0269 -0.0510 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226424589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:28 Heat of formation + Delta-G solvation = 150.574071 kcal Electronic energy + Delta-G solvation = -18692.988995 eV Core-core repulsion = 15912.526947 eV Total energy + Delta-G solvation = -2780.462048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.145 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.51767 -41.83042 -38.83437 -34.84357 -31.86457 -31.02485 -30.68666 -30.45470 -30.33975 -27.56036 -25.10444 -23.63807 -21.88278 -21.58063 -19.53984 -19.03233 -18.73724 -18.24156 -18.16456 -17.45399 -16.22127 -15.34960 -15.07440 -14.97898 -14.84637 -14.52791 -14.31578 -14.25462 -14.17112 -14.13752 -14.03143 -13.81029 -13.45248 -13.26555 -12.36378 -11.99272 -11.93191 -11.22035 -11.15589 -10.42841 -9.98402 -9.68210 -9.17342 -7.91752 -5.88234 0.15431 1.15639 1.87871 2.14570 2.19169 2.19446 2.20374 2.33058 2.43125 2.56390 2.71688 3.05574 3.09927 3.20647 3.31339 3.41693 3.53479 3.54993 3.64567 3.69386 3.74655 3.92473 4.01526 4.08516 4.11872 4.18944 4.50943 4.86830 4.91604 5.24046 5.42294 6.07240 6.44792 6.71945 6.83529 7.07843 7.24085 7.91325 9.41805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.273 5.273 3 C -0.043 4.043 4 C -0.046 4.046 5 C -0.006 4.006 6 C 0.178 3.822 7 H 0.064 0.936 8 C -0.625 4.625 9 H 0.072 0.928 10 C 0.047 3.953 11 N -0.861 5.861 12 Si 1.061 2.939 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.280 1.280 16 O -0.304 6.304 17 C 0.283 3.717 18 C -0.285 4.285 19 C 0.078 3.922 20 N -0.474 5.474 21 H 0.440 0.560 22 N -0.339 5.339 23 H 0.121 0.879 24 H 0.104 0.896 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.275 0.725 35 H 0.149 0.851 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 9.018 -14.541 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.068 4.932 3 C -0.184 4.184 4 C -0.188 4.188 5 C -0.125 4.125 6 C 0.123 3.877 7 H 0.081 0.919 8 C -0.661 4.661 9 H 0.090 0.910 10 C -0.165 4.165 11 N -0.495 5.495 12 Si 0.886 3.114 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.205 1.205 16 O -0.209 6.209 17 C 0.078 3.922 18 C -0.315 4.315 19 C -0.070 4.070 20 N -0.186 5.186 21 H 0.284 0.716 22 N -0.181 5.181 23 H 0.139 0.861 24 H 0.123 0.877 25 H 0.143 0.857 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.166 0.834 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.139 8.794 -13.140 15.812 hybrid contribution -0.754 -0.188 -1.472 1.665 sum -0.892 8.606 -14.613 16.982 Atomic orbital electron populations 1.24260 0.76370 1.09110 1.08344 1.46440 1.15600 1.14616 1.16504 1.24059 1.05138 0.80936 1.08317 1.24093 1.05135 1.02666 0.86889 1.25099 1.04136 0.97265 0.86015 1.20463 0.77839 0.88788 1.00604 0.91855 1.22056 1.30579 1.22091 0.91398 0.90994 1.26047 0.94750 0.95746 0.99959 1.70977 1.18557 1.22627 1.37326 0.83576 0.75505 0.76608 0.75713 1.19911 1.20616 1.20537 1.86406 1.24115 1.40558 1.69846 1.20416 0.90651 0.88910 0.92268 1.20921 0.94145 1.03421 1.13047 1.22501 0.92033 0.95405 0.97051 1.45808 1.03937 1.24188 1.44666 0.71575 1.77462 1.11270 1.05268 1.24078 0.86091 0.87719 0.85694 0.86623 0.86950 0.86465 0.86086 0.86979 0.86458 0.85041 0.84953 0.91086 0.83356 0.80443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.33 7.01 60.07 0.42 0.75 16 2 N -0.27 2.54 0.05 -395.63 -0.02 2.52 16 3 C -0.04 0.53 7.99 60.07 0.48 1.01 16 4 C -0.05 0.47 7.60 60.06 0.46 0.93 16 5 C -0.01 0.02 3.47 -3.82 -0.01 0.01 16 6 C 0.18 0.47 1.74 -27.89 -0.05 0.42 16 7 H 0.06 0.10 4.96 -51.93 -0.26 -0.16 16 8 C -0.62 -5.64 8.86 -34.44 -0.31 -5.94 16 9 H 0.07 0.78 7.82 -52.49 -0.41 0.37 16 10 C 0.05 0.52 5.24 -17.82 -0.09 0.42 16 11 N -0.86 -10.06 13.06 55.43 0.72 -9.33 16 12 Si 1.06 10.48 29.91 -169.99 -5.08 5.40 16 13 H -0.27 -3.03 7.11 56.52 0.40 -2.63 16 14 H -0.28 -2.99 7.11 56.52 0.40 -2.58 16 15 H -0.28 -2.49 7.11 56.52 0.40 -2.09 16 16 O -0.30 -1.13 5.16 -19.73 -0.10 -1.23 16 17 C 0.28 1.24 6.93 -17.09 -0.12 1.12 16 18 C -0.29 -0.77 10.82 -39.86 -0.43 -1.20 16 19 C 0.08 0.02 11.99 -17.23 -0.21 -0.18 16 20 N -0.47 -0.58 7.35 30.44 0.22 -0.36 16 21 H 0.44 -0.81 8.96 -182.62 -1.64 -2.45 16 22 N -0.34 -1.53 11.63 30.56 0.36 -1.17 16 23 H 0.12 -0.85 7.87 -51.93 -0.41 -1.26 16 24 H 0.10 -1.22 7.94 -51.93 -0.41 -1.63 16 25 H 0.12 -0.69 5.19 -51.93 -0.27 -0.96 16 26 H 0.12 -1.50 8.14 -51.93 -0.42 -1.92 16 27 H 0.11 -1.61 8.05 -51.93 -0.42 -2.02 16 28 H 0.12 -1.40 8.14 -51.93 -0.42 -1.82 16 29 H 0.12 -0.88 5.84 -51.93 -0.30 -1.19 16 30 H 0.11 -1.43 8.14 -51.93 -0.42 -1.85 16 31 H 0.12 -1.31 8.14 -51.93 -0.42 -1.74 16 32 H 0.13 -0.15 6.12 -51.93 -0.32 -0.47 16 33 H 0.13 -0.57 8.11 -51.93 -0.42 -0.99 16 34 H 0.28 2.51 4.64 -40.82 -0.19 2.32 16 35 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 36 H 0.18 -0.64 8.06 -52.49 -0.42 -1.06 16 LS Contribution 284.30 15.07 4.28 4.28 Total: 0.00 -21.02 284.30 -5.85 -26.87 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: -6.38 Total: -24.32 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 0.14 Total: -2.67 kcal Atomic # 7 Polarization: -9.62 SS G_CDS: 1.28 Total: -8.34 kcal Atomic # 8 Polarization: -1.13 SS G_CDS: -0.10 Total: -1.23 kcal Atomic # 14 Polarization: 10.48 SS G_CDS: -5.08 Total: 5.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -21.02 -5.85 -26.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226424589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.447 kcal (2) G-P(sol) polarization free energy of solvation -21.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds