Wall clock time and date at job start Sun Mar 29 2020 22:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46907 * 109.46887 * 2 1 4 4 C 1.46892 * 109.47495 * 240.00197 * 2 1 3 5 5 C 1.46902 * 109.47056 * 119.99643 * 2 1 3 6 6 C 1.52997 * 109.47040 * 62.01434 * 5 2 1 7 7 H 1.09004 * 109.46695 * 51.56540 * 6 5 2 8 8 C 1.50694 * 109.47148 * 171.55977 * 6 5 2 9 9 H 1.08000 * 120.00161 * 245.70747 * 8 6 5 10 10 C 1.37879 * 119.99674 * 65.71626 * 8 6 5 11 11 N 1.31506 * 120.00293 * 6.29312 * 10 8 6 12 12 Si 1.86800 * 119.99757 * 186.29073 * 10 8 6 13 13 H 1.48506 * 109.47019 * 179.97438 * 12 10 8 14 14 H 1.48499 * 109.47421 * 299.99983 * 12 10 8 15 15 H 1.48497 * 109.47171 * 59.99792 * 12 10 8 16 16 O 1.42893 * 109.47534 * 291.56722 * 6 5 2 17 17 C 1.35997 * 117.00213 * 149.99676 * 16 6 5 18 18 C 1.40293 * 125.95239 * 179.71174 * 17 16 6 19 19 C 1.35281 * 107.87248 * 179.82992 * 18 17 16 20 20 N 1.34956 * 107.82267 * 0.43165 * 19 18 17 21 21 H 0.97000 * 125.98503 * 179.72780 * 20 19 18 22 22 N 1.31103 * 125.95656 * 0.02785 * 17 16 6 23 23 H 1.08994 * 109.47306 * 287.37281 * 1 2 3 24 24 H 1.09004 * 109.47046 * 47.37257 * 1 2 3 25 25 H 1.08993 * 109.46918 * 167.36446 * 1 2 3 26 26 H 1.08995 * 109.46884 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47149 * 299.99854 * 3 2 1 28 28 H 1.08999 * 109.46893 * 59.99905 * 3 2 1 29 29 H 1.09002 * 109.46841 * 299.99799 * 4 2 1 30 30 H 1.08996 * 109.47692 * 59.99890 * 4 2 1 31 31 H 1.09002 * 109.47589 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47072 * 302.02212 * 5 2 1 33 33 H 1.09001 * 109.47214 * 182.01839 * 5 2 1 34 34 H 0.97005 * 119.99858 * 354.43481 * 11 10 8 35 35 H 1.08000 * 126.06580 * 0.02562 * 18 17 16 36 36 H 1.07997 * 126.09204 * 180.12864 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3851 0.0000 4 6 1.9588 -0.6924 -1.1994 5 6 1.9587 -0.6924 1.1995 6 6 1.4905 -2.1488 1.1745 7 1 1.7546 -2.5989 0.2175 8 6 2.1593 -2.9107 2.2894 9 1 2.8580 -3.7015 2.0598 10 6 1.8791 -2.5981 3.6028 11 7 0.9389 -1.7228 3.8842 12 14 2.8348 -3.4183 4.9823 13 1 2.3464 -2.9138 6.2909 14 1 2.6394 -4.8887 4.9140 15 1 4.2790 -3.1038 4.8390 16 8 0.0730 -2.1966 1.3482 17 6 -0.5868 -3.2299 0.7597 18 6 -1.9694 -3.4618 0.8134 19 6 -2.2303 -4.5825 0.1020 20 7 -1.0584 -5.0502 -0.3767 21 1 -0.9412 -5.8453 -0.9198 22 7 -0.0409 -4.1862 0.0481 23 1 -0.3633 0.3068 0.9807 24 1 -0.3633 0.6960 -0.7562 25 1 -0.3633 -1.0027 -0.2248 26 1 3.0486 1.3851 0.0005 27 1 1.5953 1.8989 -0.8900 28 1 1.5953 1.8989 0.8900 29 1 1.5955 -1.7201 -1.1994 30 1 1.5955 -0.1787 -2.0894 31 1 3.0488 -0.6928 -1.1991 32 1 1.5660 -0.1999 2.0891 33 1 3.0481 -0.6612 1.2178 34 1 0.4983 -1.2374 3.1691 35 1 -2.6968 -2.8519 1.3284 36 1 -3.2027 -5.0269 -0.0510 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226424589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:28 Heat of formation + Delta-G solvation = 138.933110 kcal Electronic energy + Delta-G solvation = -18693.493785 eV Core-core repulsion = 15912.526947 eV Total energy + Delta-G solvation = -2780.966838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.145 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.00014 -41.93276 -38.99227 -35.36198 -32.02923 -31.11070 -30.77099 -29.69959 -29.59265 -27.71266 -25.05961 -23.49222 -21.96396 -21.81391 -19.76605 -19.13243 -18.23236 -17.95898 -17.64389 -17.45209 -16.36075 -15.78947 -15.24685 -14.68056 -14.64926 -14.36871 -14.32263 -14.12581 -13.74930 -13.45726 -13.37689 -13.34825 -13.23050 -13.07954 -12.77867 -12.59829 -12.12842 -12.06670 -11.36965 -10.99976 -10.73486 -9.89162 -9.40309 -8.66590 -6.60749 0.81807 1.04377 1.47538 1.56361 1.70317 1.79167 2.00284 2.41527 2.54019 2.69986 2.90619 2.96668 3.16636 3.73227 3.89681 3.98652 4.09553 4.13250 4.17282 4.20798 4.34440 4.35833 4.45607 4.52150 4.61883 4.71937 4.75725 4.81357 4.85538 5.11290 5.26915 5.60380 6.00972 6.36813 6.54876 6.65284 6.84828 7.21875 8.71411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.258 5.258 3 C -0.045 4.045 4 C -0.049 4.049 5 C 0.016 3.984 6 C 0.177 3.823 7 H 0.071 0.929 8 C -0.635 4.635 9 H 0.043 0.957 10 C 0.022 3.978 11 N -0.899 5.899 12 Si 1.078 2.922 13 H -0.292 1.292 14 H -0.297 1.297 15 H -0.264 1.264 16 O -0.303 6.303 17 C 0.264 3.736 18 C -0.316 4.316 19 C 0.100 3.900 20 N -0.469 5.469 21 H 0.453 0.547 22 N -0.375 5.375 23 H 0.104 0.896 24 H 0.148 0.852 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.146 0.854 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.146 0.854 34 H 0.285 0.715 35 H 0.153 0.847 36 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 10.456 -16.919 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.084 4.916 3 C -0.185 4.185 4 C -0.190 4.190 5 C -0.106 4.106 6 C 0.122 3.878 7 H 0.088 0.912 8 C -0.673 4.673 9 H 0.061 0.939 10 C -0.186 4.186 11 N -0.535 5.535 12 Si 0.905 3.095 13 H -0.218 1.218 14 H -0.224 1.224 15 H -0.189 1.189 16 O -0.209 6.209 17 C 0.059 3.941 18 C -0.346 4.346 19 C -0.049 4.049 20 N -0.182 5.182 21 H 0.299 0.701 22 N -0.217 5.217 23 H 0.123 0.877 24 H 0.166 0.834 25 H 0.114 0.886 26 H 0.146 0.854 27 H 0.165 0.835 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.168 0.832 31 H 0.150 0.850 32 H 0.130 0.870 33 H 0.164 0.836 34 H 0.099 0.901 35 H 0.170 0.830 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.488 10.230 -15.541 18.613 hybrid contribution -0.692 -0.718 -0.867 1.321 sum -1.179 9.512 -16.409 19.003 Atomic orbital electron populations 1.24238 0.76635 1.08418 1.08847 1.46008 1.15243 1.15969 1.14353 1.24313 1.06040 0.78290 1.09886 1.24241 1.06088 1.01268 0.87393 1.24213 1.04479 0.94034 0.87854 1.20422 0.76782 0.92083 0.98533 0.91174 1.22239 1.29947 1.22128 0.93024 0.93886 1.26221 0.95254 0.96240 1.00931 1.70936 1.20102 1.24351 1.38158 0.83346 0.76332 0.75202 0.74615 1.21807 1.22356 1.18854 1.86391 1.23984 1.40252 1.70239 1.20765 0.91576 0.89098 0.92614 1.21193 0.93642 1.04998 1.14795 1.23116 0.93081 0.94018 0.94642 1.45867 1.03766 1.24152 1.44412 0.70080 1.77369 1.13002 1.06189 1.25098 0.87733 0.83378 0.88620 0.85389 0.83537 0.86790 0.89347 0.83233 0.85049 0.86951 0.83642 0.90119 0.82971 0.76169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.69 7.01 127.69 0.90 1.58 16 2 N -0.26 5.05 0.05 ******* -0.07 4.99 16 3 C -0.05 1.23 7.99 127.69 1.02 2.25 16 4 C -0.05 1.07 7.60 127.69 0.97 2.04 16 5 C 0.02 -0.09 3.47 86.30 0.30 0.21 16 6 C 0.18 1.27 1.74 29.85 0.05 1.32 16 7 H 0.07 0.37 4.96 -2.39 -0.01 0.36 16 8 C -0.64 -13.27 8.86 25.60 0.23 -13.04 16 9 H 0.04 1.09 7.82 -2.91 -0.02 1.06 16 10 C 0.02 0.54 5.24 84.66 0.44 0.98 16 11 N -0.90 -23.40 13.06 21.45 0.28 -23.12 16 12 Si 1.08 24.00 29.91 68.60 2.05 26.05 16 13 H -0.29 -7.25 7.11 99.48 0.71 -6.54 16 14 H -0.30 -7.19 7.11 99.48 0.71 -6.49 16 15 H -0.26 -5.01 7.11 99.48 0.71 -4.30 16 16 O -0.30 -2.93 5.16 -93.52 -0.48 -3.41 16 17 C 0.26 2.79 6.93 85.30 0.59 3.38 16 18 C -0.32 -1.99 10.82 22.09 0.24 -1.75 16 19 C 0.10 0.00 11.99 83.53 1.00 1.00 16 20 N -0.47 -1.21 7.35 -57.61 -0.42 -1.63 16 21 H 0.45 -1.76 8.96 -213.34 -1.91 -3.68 16 22 N -0.37 -3.94 11.63 -170.48 -1.98 -5.92 16 23 H 0.10 -1.39 7.87 -2.39 -0.02 -1.41 16 24 H 0.15 -3.84 7.94 -2.39 -0.02 -3.86 16 25 H 0.10 -0.97 5.19 -2.39 -0.01 -0.98 16 26 H 0.13 -3.68 8.14 -2.39 -0.02 -3.70 16 27 H 0.15 -4.83 8.05 -2.39 -0.02 -4.85 16 28 H 0.11 -2.90 8.14 -2.39 -0.02 -2.92 16 29 H 0.09 -1.24 5.84 -2.39 -0.01 -1.26 16 30 H 0.15 -4.32 8.14 -2.39 -0.02 -4.34 16 31 H 0.13 -3.19 8.14 -2.39 -0.02 -3.21 16 32 H 0.11 -0.09 6.12 -2.38 -0.01 -0.11 16 33 H 0.15 -1.24 8.11 -2.39 -0.02 -1.26 16 34 H 0.28 5.93 4.64 -92.70 -0.43 5.50 16 35 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.22 -2.13 8.06 -2.91 -0.02 -2.16 16 Total: 0.00 -53.16 284.30 4.62 -48.55 By element: Atomic # 1 Polarization: -42.97 SS G_CDS: -0.50 Total: -43.47 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.74 Total: -2.02 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: -2.19 Total: -25.69 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -0.48 Total: -3.41 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: 2.05 Total: 26.05 kcal Total: -53.16 4.62 -48.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226424589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.479 kcal (2) G-P(sol) polarization free energy of solvation -53.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds