Wall clock time and date at job start Sun Mar 29 2020 22:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 109.46964 * 2 1 4 4 C 1.46901 * 109.47345 * 240.00657 * 2 1 3 5 5 C 1.46901 * 109.47510 * 120.00085 * 2 1 3 6 6 C 1.53001 * 109.46815 * 64.51354 * 5 2 1 7 7 H 1.08993 * 109.47176 * 53.29508 * 6 5 2 8 8 C 1.50708 * 109.46659 * 173.29860 * 6 5 2 9 9 H 1.07994 * 119.99449 * 239.99787 * 8 6 5 10 10 C 1.37868 * 119.99781 * 60.00196 * 8 6 5 11 11 N 1.31510 * 120.00670 * 359.97438 * 10 8 6 12 12 Si 1.86804 * 119.99522 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47360 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47260 * 120.00003 * 12 10 8 15 15 H 1.48504 * 109.47051 * 239.99820 * 12 10 8 16 16 O 1.42897 * 109.46889 * 293.29329 * 6 5 2 17 17 C 1.35512 * 116.99771 * 150.00344 * 16 6 5 18 18 N 1.31018 * 125.76158 * 0.31586 * 17 16 6 19 19 C 1.34359 * 109.29945 * 180.17138 * 18 17 16 20 20 C 1.34420 * 108.26558 * 359.55961 * 19 18 17 21 21 N 1.35874 * 125.76635 * 180.02562 * 17 16 6 22 22 H 0.97008 * 126.47944 * 0.02562 * 21 17 16 23 23 H 1.09000 * 109.47417 * 290.67041 * 1 2 3 24 24 H 1.08999 * 109.47618 * 50.67831 * 1 2 3 25 25 H 1.09003 * 109.46789 * 170.67559 * 1 2 3 26 26 H 1.09000 * 109.47538 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47207 * 300.00641 * 3 2 1 28 28 H 1.09000 * 109.47029 * 60.00117 * 3 2 1 29 29 H 1.09002 * 109.46395 * 299.99315 * 4 2 1 30 30 H 1.08997 * 109.47486 * 59.99166 * 4 2 1 31 31 H 1.09002 * 109.47355 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46905 * 304.51531 * 5 2 1 33 33 H 1.08998 * 109.47208 * 184.51206 * 5 2 1 34 34 H 0.97004 * 119.99991 * 180.02562 * 11 10 8 35 35 H 1.08001 * 125.86527 * 179.81601 * 19 18 17 36 36 H 1.08000 * 126.53865 * 180.30064 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5435 -2.1640 1.1439 7 1 1.8699 -2.5982 0.1989 8 6 2.1827 -2.9097 2.2869 9 1 2.8491 -3.7358 2.0872 10 6 1.9167 -2.5374 3.5874 11 7 1.1055 -1.5312 3.8306 12 14 2.7085 -3.4622 5.0043 13 1 3.5724 -4.5444 4.4678 14 1 3.5316 -2.5242 5.8092 15 1 1.6504 -4.0536 5.8622 16 8 0.1217 -2.2619 1.2471 17 6 -0.4697 -3.3098 0.6238 18 7 0.1476 -4.2422 -0.0590 19 6 -0.7558 -5.1147 -0.5365 20 6 -1.9759 -4.7214 -0.1321 21 7 -1.8024 -3.5741 0.6059 22 1 -2.4997 -3.0520 1.0328 23 1 -0.3634 0.3628 0.9615 24 1 -0.3634 0.6512 -0.7950 25 1 -0.3633 -1.0141 -0.1665 26 1 3.0486 1.3851 0.0005 27 1 1.5952 1.8989 -0.8899 28 1 1.5953 1.8988 0.8900 29 1 1.5954 -1.7201 -1.1995 30 1 1.5953 -0.1786 -2.0895 31 1 3.0487 -0.6920 -1.1997 32 1 1.5308 -0.2275 2.0876 33 1 3.0457 -0.6230 1.2407 34 1 0.9186 -1.2691 4.7457 35 1 -0.5385 -5.9849 -1.1380 36 1 -2.9135 -5.2129 -0.3458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228298216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:31 Heat of formation + Delta-G solvation = 138.403710 kcal Electronic energy + Delta-G solvation = -18692.315465 eV Core-core repulsion = 15911.325670 eV Total energy + Delta-G solvation = -2780.989795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.145 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.37984 -42.39624 -38.62536 -34.66711 -33.09405 -31.68667 -30.38132 -30.28425 -29.10018 -27.76879 -25.07525 -23.26355 -22.38610 -21.30175 -19.86446 -19.03140 -18.57827 -18.17392 -17.73063 -16.81059 -16.34937 -15.90258 -15.40634 -14.93872 -14.83907 -14.46113 -14.24534 -14.16854 -14.11447 -13.96349 -13.81857 -13.64325 -13.48451 -12.77169 -12.58565 -12.17511 -11.71127 -11.27837 -10.77551 -10.64252 -10.53043 -10.18441 -8.59141 -7.78745 -5.96221 0.29968 1.43289 1.69052 2.11656 2.27797 2.28737 2.32138 2.33651 2.36913 2.58406 3.02477 3.14913 3.18643 3.31301 3.42660 3.50363 3.61564 3.64784 3.73422 3.76655 3.85496 4.07110 4.12740 4.17020 4.43759 4.52251 4.69345 4.93662 5.19951 5.32282 5.81791 6.20100 6.25452 6.32824 7.03163 7.26147 7.51810 7.87048 9.24074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.273 5.273 3 C -0.040 4.040 4 C -0.049 4.049 5 C -0.003 4.003 6 C 0.209 3.791 7 H 0.066 0.934 8 C -0.544 4.544 9 H 0.082 0.918 10 C 0.086 3.914 11 N -0.869 5.869 12 Si 0.905 3.095 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.276 1.276 16 O -0.299 6.299 17 C 0.416 3.584 18 N -0.529 5.529 19 C -0.008 4.008 20 C -0.077 4.077 21 N -0.575 5.575 22 H 0.418 0.582 23 H 0.120 0.880 24 H 0.100 0.900 25 H 0.124 0.876 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.277 0.723 35 H 0.168 0.832 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 10.661 -12.368 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.069 4.931 3 C -0.182 4.182 4 C -0.191 4.191 5 C -0.122 4.122 6 C 0.155 3.845 7 H 0.084 0.916 8 C -0.580 4.580 9 H 0.100 0.900 10 C -0.122 4.122 11 N -0.504 5.504 12 Si 0.731 3.269 13 H -0.188 1.188 14 H -0.200 1.200 15 H -0.201 1.201 16 O -0.204 6.204 17 C 0.114 3.886 18 N -0.266 5.266 19 C -0.154 4.154 20 C -0.207 4.207 21 N -0.191 5.191 22 H 0.255 0.745 23 H 0.138 0.862 24 H 0.118 0.882 25 H 0.142 0.858 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.087 0.913 35 H 0.185 0.815 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.037 10.950 -12.197 16.424 hybrid contribution -0.903 -0.343 1.333 1.646 sum -1.939 10.607 -10.863 15.306 Atomic orbital electron populations 1.24238 0.76831 1.09198 1.07792 1.46396 1.15362 1.14575 1.16781 1.24005 1.05047 0.81089 1.08082 1.24121 1.05136 1.02900 0.86922 1.24939 1.03670 0.97175 0.86367 1.20291 0.75657 0.88744 0.99826 0.91592 1.21330 1.29678 1.17609 0.89424 0.90024 1.25109 0.93027 0.94247 0.99860 1.69620 1.32394 1.25952 1.22397 0.86253 0.79691 0.80240 0.80722 1.18845 1.20008 1.20080 1.86203 1.26762 1.38316 1.69164 1.20874 0.80814 0.91633 0.95240 1.70624 1.31868 1.05341 1.18737 1.22087 0.88521 1.00689 1.04071 1.22463 1.01354 0.91757 1.05152 1.42940 1.07272 1.23977 1.44908 0.74468 0.86185 0.88159 0.85755 0.86705 0.87223 0.86540 0.85781 0.87271 0.86479 0.82446 0.85544 0.91270 0.81493 0.80666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.33 7.17 60.06 0.43 0.76 16 2 N -0.27 2.50 0.05 -395.62 -0.02 2.48 16 3 C -0.04 0.49 8.00 60.07 0.48 0.97 16 4 C -0.05 0.49 7.54 60.07 0.45 0.94 16 5 C 0.00 0.01 3.53 -3.82 -0.01 0.00 16 6 C 0.21 0.47 1.73 -27.88 -0.05 0.42 16 7 H 0.07 0.09 4.98 -51.93 -0.26 -0.17 16 8 C -0.54 -4.44 8.90 -34.44 -0.31 -4.74 16 9 H 0.08 0.83 7.81 -52.49 -0.41 0.42 16 10 C 0.09 0.82 5.24 -17.82 -0.09 0.72 16 11 N -0.87 -7.69 10.95 55.43 0.61 -7.08 16 12 Si 0.91 8.66 29.54 -169.99 -5.02 3.64 16 13 H -0.26 -2.73 7.11 56.52 0.40 -2.33 16 14 H -0.27 -2.66 7.11 56.52 0.40 -2.26 16 15 H -0.28 -3.05 7.11 56.52 0.40 -2.65 16 16 O -0.30 -0.90 6.42 -18.23 -0.12 -1.01 16 17 C 0.42 1.59 8.06 -89.18 -0.72 0.87 16 18 N -0.53 -2.71 10.16 -14.72 -0.15 -2.86 16 19 C -0.01 -0.02 11.85 -17.79 -0.21 -0.24 16 20 C -0.08 -0.10 12.04 -16.35 -0.20 -0.29 16 21 N -0.58 -0.89 6.22 -13.98 -0.09 -0.98 16 22 H 0.42 -0.38 8.96 -40.82 -0.37 -0.74 16 23 H 0.12 -0.86 7.94 -51.93 -0.41 -1.28 16 24 H 0.10 -1.15 8.00 -51.93 -0.42 -1.56 16 25 H 0.12 -0.69 4.95 -51.93 -0.26 -0.94 16 26 H 0.11 -1.47 8.12 -51.93 -0.42 -1.89 16 27 H 0.11 -1.54 8.07 -51.93 -0.42 -1.96 16 28 H 0.12 -1.36 8.14 -51.93 -0.42 -1.79 16 29 H 0.12 -0.85 5.86 -51.93 -0.30 -1.16 16 30 H 0.11 -1.35 8.14 -51.93 -0.42 -1.78 16 31 H 0.12 -1.29 8.14 -51.93 -0.42 -1.71 16 32 H 0.16 -0.11 6.12 -51.93 -0.32 -0.43 16 33 H 0.13 -0.55 8.09 -51.93 -0.42 -0.97 16 34 H 0.28 2.60 8.31 -40.82 -0.34 2.26 16 35 H 0.17 0.17 8.06 -52.49 -0.42 -0.26 16 36 H 0.18 -0.32 8.06 -52.49 -0.42 -0.75 16 LS Contribution 286.46 15.07 4.32 4.32 Total: 0.00 -18.07 286.46 -5.95 -24.01 By element: Atomic # 1 Polarization: -16.67 SS G_CDS: -5.25 Total: -21.92 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.22 Total: -0.59 kcal Atomic # 7 Polarization: -8.79 SS G_CDS: 0.35 Total: -8.44 kcal Atomic # 8 Polarization: -0.90 SS G_CDS: -0.12 Total: -1.01 kcal Atomic # 14 Polarization: 8.66 SS G_CDS: -5.02 Total: 3.64 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -18.07 -5.95 -24.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228298216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.417 kcal (2) G-P(sol) polarization free energy of solvation -18.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds