Wall clock time and date at job start Sun Mar 29 2020 22:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 109.46964 * 2 1 4 4 C 1.46901 * 109.47345 * 240.00657 * 2 1 3 5 5 C 1.46901 * 109.47510 * 120.00085 * 2 1 3 6 6 C 1.53001 * 109.46815 * 64.51354 * 5 2 1 7 7 H 1.08993 * 109.47176 * 53.29508 * 6 5 2 8 8 C 1.50708 * 109.46659 * 173.29860 * 6 5 2 9 9 H 1.07994 * 119.99449 * 239.99787 * 8 6 5 10 10 C 1.37868 * 119.99781 * 60.00196 * 8 6 5 11 11 N 1.31510 * 120.00670 * 359.97438 * 10 8 6 12 12 Si 1.86804 * 119.99522 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47360 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47260 * 120.00003 * 12 10 8 15 15 H 1.48504 * 109.47051 * 239.99820 * 12 10 8 16 16 O 1.42897 * 109.46889 * 293.29329 * 6 5 2 17 17 C 1.35512 * 116.99771 * 150.00344 * 16 6 5 18 18 N 1.31018 * 125.76158 * 0.31586 * 17 16 6 19 19 C 1.34359 * 109.29945 * 180.17138 * 18 17 16 20 20 C 1.34420 * 108.26558 * 359.55961 * 19 18 17 21 21 N 1.35874 * 125.76635 * 180.02562 * 17 16 6 22 22 H 0.97008 * 126.47944 * 0.02562 * 21 17 16 23 23 H 1.09000 * 109.47417 * 290.67041 * 1 2 3 24 24 H 1.08999 * 109.47618 * 50.67831 * 1 2 3 25 25 H 1.09003 * 109.46789 * 170.67559 * 1 2 3 26 26 H 1.09000 * 109.47538 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47207 * 300.00641 * 3 2 1 28 28 H 1.09000 * 109.47029 * 60.00117 * 3 2 1 29 29 H 1.09002 * 109.46395 * 299.99315 * 4 2 1 30 30 H 1.08997 * 109.47486 * 59.99166 * 4 2 1 31 31 H 1.09002 * 109.47355 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46905 * 304.51531 * 5 2 1 33 33 H 1.08998 * 109.47208 * 184.51206 * 5 2 1 34 34 H 0.97004 * 119.99991 * 180.02562 * 11 10 8 35 35 H 1.08001 * 125.86527 * 179.81601 * 19 18 17 36 36 H 1.08000 * 126.53865 * 180.30064 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5435 -2.1640 1.1439 7 1 1.8699 -2.5982 0.1989 8 6 2.1827 -2.9097 2.2869 9 1 2.8491 -3.7358 2.0872 10 6 1.9167 -2.5374 3.5874 11 7 1.1055 -1.5312 3.8306 12 14 2.7085 -3.4622 5.0043 13 1 3.5724 -4.5444 4.4678 14 1 3.5316 -2.5242 5.8092 15 1 1.6504 -4.0536 5.8622 16 8 0.1217 -2.2619 1.2471 17 6 -0.4697 -3.3098 0.6238 18 7 0.1476 -4.2422 -0.0590 19 6 -0.7558 -5.1147 -0.5365 20 6 -1.9759 -4.7214 -0.1321 21 7 -1.8024 -3.5741 0.6059 22 1 -2.4997 -3.0520 1.0328 23 1 -0.3634 0.3628 0.9615 24 1 -0.3634 0.6512 -0.7950 25 1 -0.3633 -1.0141 -0.1665 26 1 3.0486 1.3851 0.0005 27 1 1.5952 1.8989 -0.8899 28 1 1.5953 1.8988 0.8900 29 1 1.5954 -1.7201 -1.1995 30 1 1.5953 -0.1786 -2.0895 31 1 3.0487 -0.6920 -1.1997 32 1 1.5308 -0.2275 2.0876 33 1 3.0457 -0.6230 1.2407 34 1 0.9186 -1.2691 4.7457 35 1 -0.5385 -5.9849 -1.1380 36 1 -2.9135 -5.2129 -0.3458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228298216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:31 Heat of formation + Delta-G solvation = 129.468238 kcal Electronic energy + Delta-G solvation = -18692.702936 eV Core-core repulsion = 15911.325670 eV Total energy + Delta-G solvation = -2781.377266 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.145 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.96896 -42.40226 -38.75729 -35.17161 -33.30693 -31.74485 -29.64020 -29.51357 -29.19476 -27.89552 -24.92080 -23.10239 -22.56812 -21.47646 -20.04425 -18.91278 -18.02045 -17.87791 -17.48207 -16.87190 -16.55200 -16.45800 -15.42964 -14.79511 -14.41030 -14.28355 -14.18117 -13.98941 -13.57981 -13.33642 -13.26540 -13.23558 -13.16818 -13.02012 -12.90249 -12.74269 -12.38162 -11.58664 -11.17927 -10.92071 -10.88363 -10.75215 -8.80217 -8.44435 -6.60305 0.96815 1.22519 1.30963 1.41912 1.46171 1.59965 2.24028 2.35760 2.79198 2.97384 3.05128 3.07707 3.38563 3.85735 4.03501 4.09464 4.24793 4.27176 4.35448 4.44495 4.45742 4.55321 4.58730 4.67500 4.76938 4.79703 4.80843 4.85712 5.15871 5.22538 5.53400 5.65730 5.78697 6.19607 6.49394 6.92976 7.19359 7.33285 8.53201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.259 5.259 3 C -0.043 4.043 4 C -0.051 4.051 5 C 0.018 3.982 6 C 0.209 3.791 7 H 0.071 0.929 8 C -0.556 4.556 9 H 0.050 0.950 10 C 0.071 3.929 11 N -0.867 5.867 12 Si 0.919 3.081 13 H -0.281 1.281 14 H -0.273 1.273 15 H -0.298 1.298 16 O -0.295 6.295 17 C 0.397 3.603 18 N -0.560 5.560 19 C -0.041 4.041 20 C -0.060 4.060 21 N -0.568 5.568 22 H 0.429 0.571 23 H 0.106 0.894 24 H 0.141 0.859 25 H 0.095 0.905 26 H 0.126 0.874 27 H 0.142 0.858 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.270 0.730 35 H 0.180 0.820 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 12.607 -14.409 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 N 0.083 4.917 3 C -0.183 4.183 4 C -0.192 4.192 5 C -0.103 4.103 6 C 0.154 3.846 7 H 0.089 0.911 8 C -0.594 4.594 9 H 0.068 0.932 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.748 3.252 13 H -0.206 1.206 14 H -0.199 1.199 15 H -0.225 1.225 16 O -0.200 6.200 17 C 0.095 3.905 18 N -0.297 5.297 19 C -0.186 4.186 20 C -0.190 4.190 21 N -0.185 5.185 22 H 0.269 0.731 23 H 0.125 0.875 24 H 0.160 0.840 25 H 0.113 0.887 26 H 0.145 0.855 27 H 0.160 0.840 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.197 0.803 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.803 12.915 -14.241 19.309 hybrid contribution -0.703 -1.033 1.871 2.250 sum -2.506 11.882 -12.370 17.334 Atomic orbital electron populations 1.24208 0.76999 1.08182 1.08651 1.46007 1.15106 1.15869 1.14707 1.24244 1.05916 0.78557 1.09583 1.24236 1.06073 1.01421 0.87472 1.24156 1.04109 0.93936 0.88085 1.20262 0.74752 0.91941 0.97629 0.91102 1.21458 1.29246 1.17403 0.91265 0.93206 1.25144 0.93824 0.94724 0.99874 1.69671 1.33064 1.26064 1.21542 0.86112 0.78604 0.79616 0.80842 1.20602 1.19873 1.22469 1.86200 1.26505 1.37742 1.69511 1.21027 0.81710 0.91890 0.95889 1.70544 1.33356 1.06248 1.19546 1.22467 0.89179 1.01455 1.05462 1.23010 1.02034 0.90786 1.03173 1.42959 1.06835 1.24086 1.44601 0.73095 0.87488 0.84037 0.88670 0.85535 0.83967 0.86841 0.89137 0.83681 0.85114 0.84574 0.84259 0.91982 0.80299 0.77303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.69 7.17 127.69 0.92 1.61 16 2 N -0.26 5.07 0.05 ******* -0.07 5.00 16 3 C -0.04 1.15 8.00 127.69 1.02 2.17 16 4 C -0.05 1.09 7.54 127.69 0.96 2.05 16 5 C 0.02 -0.11 3.53 86.30 0.30 0.19 16 6 C 0.21 1.25 1.73 29.85 0.05 1.31 16 7 H 0.07 0.33 4.98 -2.39 -0.01 0.32 16 8 C -0.56 -10.51 8.90 25.60 0.23 -10.28 16 9 H 0.05 1.20 7.81 -2.91 -0.02 1.18 16 10 C 0.07 1.51 5.24 84.65 0.44 1.96 16 11 N -0.87 -16.86 10.95 21.44 0.23 -16.62 16 12 Si 0.92 20.07 29.54 68.60 2.03 22.10 16 13 H -0.28 -6.73 7.11 99.48 0.71 -6.03 16 14 H -0.27 -5.79 7.11 99.48 0.71 -5.08 16 15 H -0.30 -7.49 7.11 99.48 0.71 -6.78 16 16 O -0.29 -2.18 6.42 -88.15 -0.57 -2.74 16 17 C 0.40 3.51 8.06 179.84 1.45 4.95 16 18 N -0.56 -6.60 10.16 -314.07 -3.19 -9.79 16 19 C -0.04 -0.28 11.85 83.43 0.99 0.71 16 20 C -0.06 -0.12 12.04 82.93 1.00 0.88 16 21 N -0.57 -1.84 6.22 -309.20 -1.92 -3.76 16 22 H 0.43 -0.86 8.96 -92.70 -0.83 -1.69 16 23 H 0.11 -1.56 7.94 -2.39 -0.02 -1.58 16 24 H 0.14 -3.67 8.00 -2.39 -0.02 -3.69 16 25 H 0.09 -1.03 4.95 -2.39 -0.01 -1.04 16 26 H 0.13 -3.60 8.12 -2.39 -0.02 -3.62 16 27 H 0.14 -4.62 8.07 -2.39 -0.02 -4.64 16 28 H 0.11 -2.87 8.14 -2.39 -0.02 -2.89 16 29 H 0.09 -1.21 5.86 -2.39 -0.01 -1.22 16 30 H 0.15 -4.08 8.14 -2.39 -0.02 -4.10 16 31 H 0.13 -3.11 8.14 -2.39 -0.02 -3.13 16 32 H 0.14 -0.10 6.12 -2.39 -0.01 -0.11 16 33 H 0.14 -1.24 8.09 -2.39 -0.02 -1.26 16 34 H 0.27 5.54 8.31 -92.71 -0.77 4.77 16 35 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 36 H 0.21 -1.20 8.06 -2.91 -0.02 -1.22 16 Total: 0.00 -45.70 286.46 4.12 -41.59 By element: Atomic # 1 Polarization: -41.56 SS G_CDS: 0.24 Total: -41.31 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 7.36 Total: 5.54 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: -4.95 Total: -25.17 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: -0.57 Total: -2.74 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: 2.03 Total: 22.10 kcal Total: -45.70 4.12 -41.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228298216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.054 kcal (2) G-P(sol) polarization free energy of solvation -45.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds