Wall clock time and date at job start Sun Mar 29 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46926 * 2 1 4 4 O 1.42892 * 109.47270 * 119.99895 * 2 1 3 5 5 C 1.53003 * 109.47175 * 240.00099 * 2 1 3 6 6 C 1.52997 * 109.46935 * 174.99475 * 5 2 1 7 7 N 1.46497 * 109.47042 * 179.97438 * 6 5 2 8 8 C 1.35317 * 125.87017 * 125.00329 * 7 6 5 9 9 C 1.35348 * 106.17735 * 180.21003 * 8 7 6 10 10 C 1.50695 * 126.75026 * 179.78015 * 9 8 7 11 11 N 1.46501 * 109.47705 * 94.99599 * 10 9 8 12 12 C 1.36933 * 120.00058 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00207 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99868 * 179.97438 * 12 11 10 15 15 N 1.31628 * 120.00084 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00269 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47310 * 90.00187 * 16 14 12 18 18 H 1.48504 * 109.47223 * 210.00512 * 16 14 12 19 19 H 1.48500 * 109.47110 * 330.00038 * 16 14 12 20 20 N 1.33774 * 106.49647 * 359.63857 * 9 8 7 21 21 N 1.28636 * 108.88665 * 0.37294 * 20 9 8 22 22 H 1.09002 * 109.47308 * 300.00129 * 1 2 3 23 23 H 1.08997 * 109.47459 * 59.99947 * 1 2 3 24 24 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 25 25 H 0.96708 * 114.00195 * 300.00228 * 4 2 1 26 26 H 1.09005 * 109.46916 * 54.99859 * 5 2 1 27 27 H 1.08999 * 109.47097 * 295.00089 * 5 2 1 28 28 H 1.09005 * 109.47005 * 60.00439 * 6 5 2 29 29 H 1.08999 * 109.47730 * 300.00227 * 6 5 2 30 30 H 1.08002 * 126.90702 * 359.93974 * 8 7 6 31 31 H 1.09004 * 109.46902 * 214.99581 * 10 9 8 32 32 H 1.09001 * 109.47591 * 334.99010 * 10 9 8 33 33 H 0.96996 * 119.99307 * 359.97438 * 11 10 9 34 34 H 0.96999 * 120.00192 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5648 -0.6131 -1.3137 7 7 4.0532 -1.3042 -2.5095 8 6 4.8344 -0.7646 -3.4737 9 6 5.0404 -1.7444 -4.3844 10 6 5.8464 -1.6408 -5.6535 11 7 7.2087 -2.1200 -5.4075 12 6 8.1280 -2.1208 -6.4224 13 1 7.8489 -1.7678 -7.4041 14 6 9.4190 -2.5743 -6.1891 15 7 9.7594 -3.0041 -4.9924 16 14 10.6733 -2.5748 -7.5733 17 1 11.3973 -1.2783 -7.5858 18 1 11.6420 -3.6807 -7.3632 19 1 9.9779 -2.7660 -8.8714 20 7 4.3904 -2.8237 -3.9348 21 7 3.8133 -2.5293 -2.8235 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7210 -0.2700 1.9980 26 1 1.6054 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2056 28 1 3.9995 -1.0727 -0.4260 29 1 3.8532 0.4371 -1.3574 30 1 5.2133 0.2461 -3.5113 31 1 5.3818 -2.2492 -6.4296 32 1 5.8801 -0.6010 -5.9788 33 1 7.4595 -2.4367 -4.5256 34 1 10.6617 -3.3207 -4.8292 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262026780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:44 Heat of formation + Delta-G solvation = 23.604167 kcal Electronic energy + Delta-G solvation = -16480.451237 eV Core-core repulsion = 13642.713189 eV Total energy + Delta-G solvation = -2837.738048 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.20074 -38.86680 -36.94027 -35.88472 -33.71416 -32.98671 -31.58677 -30.16053 -27.57995 -25.78846 -24.75866 -22.76245 -22.34643 -21.51663 -19.32000 -18.45832 -18.13123 -17.38669 -16.60542 -15.90045 -15.81414 -15.39613 -15.31899 -15.03846 -14.83466 -14.27380 -13.71695 -13.45368 -13.32966 -13.01509 -12.78819 -12.75464 -12.57252 -12.29994 -12.08218 -11.93391 -11.80826 -11.73483 -11.03823 -10.95022 -10.83349 -10.18965 -9.01633 -7.92551 -5.23376 0.65989 1.44808 1.49889 1.53046 1.53407 1.62179 2.60415 3.33124 3.37493 3.41411 3.53992 3.84530 3.94524 4.04776 4.21844 4.24752 4.27511 4.31457 4.37158 4.54774 4.75335 4.87056 4.89510 5.03459 5.07346 5.16791 5.23848 5.29962 5.51427 5.72092 6.26988 6.93356 7.33459 7.54748 8.04920 8.31136 9.31590 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.065351 B = 0.003752 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.355234 B = 7460.555209 C = 7603.249831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 H 0.087 0.913 4 O -0.589 6.589 5 C -0.124 4.124 6 C 0.111 3.889 7 N -0.284 5.284 8 C -0.020 4.020 9 C -0.042 4.042 10 C 0.236 3.764 11 N -0.740 5.740 12 C -0.244 4.244 13 H 0.086 0.914 14 C -0.080 4.080 15 N -0.974 5.974 16 Si 0.981 3.019 17 H -0.282 1.282 18 H -0.299 1.299 19 H -0.267 1.267 20 N -0.303 5.303 21 N -0.116 5.116 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.397 0.603 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.144 0.856 30 H 0.231 0.769 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.370 0.630 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 13.497 11.678 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.050 3.950 3 H 0.104 0.896 4 O -0.399 6.399 5 C -0.162 4.162 6 C -0.008 4.008 7 N -0.078 5.078 8 C -0.172 4.172 9 C -0.181 4.181 10 C 0.109 3.891 11 N -0.383 5.383 12 C -0.375 4.375 13 H 0.103 0.897 14 C -0.271 4.271 15 N -0.625 5.625 16 Si 0.810 3.190 17 H -0.208 1.208 18 H -0.226 1.226 19 H -0.192 1.192 20 N -0.170 5.170 21 N -0.095 5.095 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.247 0.753 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.247 0.753 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.201 0.799 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.113 11.846 11.501 25.257 hybrid contribution 1.124 0.653 -0.061 1.302 sum -17.989 12.498 11.440 24.712 Atomic orbital electron populations 1.22480 0.95295 1.02547 1.03856 1.21702 0.93578 0.95594 0.84097 0.89561 1.86529 1.77354 1.58763 1.17206 1.21911 0.92701 1.02677 0.98901 1.22515 0.96442 0.99088 0.82716 1.47735 1.32710 1.08598 1.18739 1.23922 1.00059 1.03348 0.89899 1.22349 1.03561 0.90885 1.01265 1.18970 0.82530 0.98434 0.89209 1.42539 1.07226 1.77373 1.11173 1.19722 0.91217 1.34421 0.92183 0.89658 1.25681 0.99856 1.02272 0.99323 1.69871 1.19312 1.50693 1.22643 0.85025 0.78471 0.76872 0.78670 1.20836 1.22580 1.19183 1.75023 1.11030 1.26084 1.04835 1.78135 1.21815 0.98367 1.11163 0.90324 0.90759 0.93172 0.75251 0.88940 0.92071 0.88277 0.83835 0.75252 0.95436 0.91721 0.79913 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.53 71.98 0.69 -0.87 16 2 C 0.11 1.09 3.58 30.60 0.11 1.20 16 3 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 4 O -0.59 -7.54 12.85 -148.98 -1.92 -9.46 16 5 C -0.12 -1.93 5.05 30.59 0.15 -1.78 16 6 C 0.11 1.96 6.35 86.38 0.55 2.50 16 7 N -0.28 -8.09 3.44 -347.74 -1.20 -9.29 16 8 C -0.02 -0.60 11.50 83.49 0.96 0.36 16 9 C -0.04 -1.65 6.61 41.59 0.28 -1.37 16 10 C 0.24 10.20 6.82 85.63 0.58 10.78 16 11 N -0.74 -40.17 5.59 -347.18 -1.94 -42.11 16 12 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 13 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 14 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 15 N -0.97 -62.22 13.06 21.65 0.28 -61.93 16 16 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 N -0.30 -13.28 12.41 -48.60 -0.60 -13.88 16 21 N -0.12 -4.38 12.91 37.02 0.48 -3.90 16 22 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 23 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.40 1.59 9.08 -74.05 -0.67 0.92 16 26 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 28 H 0.10 1.92 7.82 -2.38 -0.02 1.90 16 29 H 0.14 1.33 8.07 -2.39 -0.02 1.31 16 30 H 0.23 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.37 22.02 7.66 -92.71 -0.71 21.31 16 34 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -79.76 298.03 1.48 -78.28 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.27 Total: 19.84 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 4.62 Total: -6.60 kcal Atomic # 7 Polarization: -128.14 SS G_CDS: -2.98 Total: -131.12 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -1.92 Total: -9.46 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -79.76 1.48 -78.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262026780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.881 kcal (2) G-P(sol) polarization free energy of solvation -79.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds