Wall clock time and date at job start Sun Mar 29 2020 22:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99797 * 2 1 4 4 C 1.53000 * 109.47015 * 270.27415 * 3 2 1 5 5 N 1.46497 * 109.47299 * 180.02562 * 4 3 2 6 6 C 1.36936 * 120.00218 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00082 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00212 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99856 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00054 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47004 * 59.99982 * 10 8 6 12 12 H 1.48504 * 109.46741 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47121 * 299.99622 * 10 8 6 14 14 C 1.34776 * 119.99962 * 180.27476 * 2 1 3 15 15 O 1.21289 * 119.99870 * 179.73006 * 14 2 1 16 16 C 1.50696 * 120.00297 * 359.72070 * 14 2 1 17 17 C 1.52994 * 109.47429 * 185.52275 * 16 14 2 18 18 C 1.53001 * 115.54865 * 279.59488 * 17 16 14 19 19 C 1.52997 * 117.50214 * 133.88571 * 17 16 14 20 20 C 1.52994 * 60.00111 * 252.51138 * 19 17 16 21 21 H 1.08998 * 109.47186 * 269.72512 * 1 2 3 22 22 H 1.08993 * 109.46872 * 29.72589 * 1 2 3 23 23 H 1.08996 * 109.46569 * 149.72839 * 1 2 3 24 24 H 1.08998 * 109.47213 * 30.27517 * 3 2 1 25 25 H 1.09002 * 109.47013 * 150.27521 * 3 2 1 26 26 H 1.09005 * 109.46933 * 299.99848 * 4 3 2 27 27 H 1.08993 * 109.47157 * 59.99901 * 4 3 2 28 28 H 0.97002 * 120.00072 * 359.97438 * 5 4 3 29 29 H 0.97000 * 119.99812 * 179.97438 * 9 8 6 30 30 H 1.09000 * 109.47286 * 305.52514 * 16 14 2 31 31 H 1.09001 * 109.46851 * 65.52317 * 16 14 2 32 32 H 1.08992 * 109.47599 * 65.00779 * 18 17 16 33 33 H 1.09003 * 109.47014 * 185.00666 * 18 17 16 34 34 H 1.09000 * 109.47067 * 305.00517 * 18 17 16 35 35 H 1.09008 * 117.49734 * 359.97438 * 19 17 16 36 36 H 1.09000 * 117.50350 * 145.01611 * 19 17 16 37 37 H 1.09003 * 117.49737 * 252.51070 * 20 19 17 38 38 H 1.08994 * 117.50431 * 107.48622 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4465 1.7139 -1.4425 5 7 3.1794 2.9823 -1.4426 6 6 3.5165 3.5783 -2.6285 7 1 3.2423 3.1130 -3.5637 8 6 4.2106 4.7805 -2.6285 9 7 4.5443 5.3477 -1.4887 10 14 4.6709 5.5931 -4.2463 11 1 3.4383 5.8904 -5.0192 12 1 5.4015 6.8572 -3.9749 13 1 5.5384 4.6781 -5.0306 14 6 2.1389 -1.1672 -0.0056 15 8 3.3518 -1.1671 -0.0105 16 6 1.3855 -2.4723 -0.0055 17 6 2.3745 -3.6321 0.1264 18 6 3.0833 -4.0450 -1.1651 19 6 2.0398 -4.7350 1.1327 20 6 3.1645 -3.7419 1.4320 21 1 -0.3633 -0.0049 1.0276 22 1 -0.3633 0.8924 -0.5095 23 1 -0.3632 -0.8875 -0.5180 24 1 1.6105 2.0271 0.5181 25 1 3.1520 1.1372 0.5096 26 1 3.0335 0.9554 -1.9606 27 1 1.4920 1.8454 -1.9520 28 1 3.4254 3.4004 -0.6025 29 1 5.0296 6.1876 -1.4887 30 1 0.6902 -2.4904 0.8338 31 1 0.8311 -2.5718 -0.9387 32 1 3.7214 -3.2298 -1.5060 33 1 3.6925 -4.9294 -0.9784 34 1 2.3411 -4.2701 -1.9310 35 1 1.1152 -4.6340 1.7011 36 1 2.3244 -5.7550 0.8747 37 1 4.1892 -4.1086 1.3709 38 1 2.9797 -2.9877 2.1969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266779288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:04 Heat of formation + Delta-G solvation = -24.989201 kcal Electronic energy + Delta-G solvation = -17267.232937 eV Core-core repulsion = 14530.928066 eV Total energy + Delta-G solvation = -2736.304871 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.11243 -38.69880 -37.19676 -36.03432 -33.48221 -31.16110 -29.65692 -28.73759 -27.35086 -25.52515 -23.38635 -23.21219 -20.89882 -19.51461 -19.17698 -17.95270 -17.20854 -16.87165 -16.46450 -15.89767 -15.42099 -15.31813 -15.13268 -14.82704 -14.34484 -13.97861 -13.70090 -13.26016 -13.19365 -13.07712 -12.94125 -12.86458 -12.63433 -12.39440 -12.31691 -12.18106 -12.04125 -11.88899 -11.19029 -10.99280 -10.85424 -10.40147 -9.64204 -9.09295 -7.99640 -5.30967 1.44689 1.49227 1.55344 1.71320 2.00219 2.54475 2.91703 3.33324 3.69185 3.75712 3.87965 4.05897 4.08844 4.11903 4.23882 4.28058 4.38588 4.54944 4.59154 4.67095 4.77277 4.82874 4.95147 4.96925 4.99876 5.01676 5.07363 5.09345 5.18804 5.29765 5.39697 5.40836 5.56723 6.21625 6.48860 7.27180 7.28310 7.99144 8.24822 9.23617 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038511 B = 0.004435 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.886529 B = 6311.200185 C = 6571.733500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.616 5.616 3 C 0.122 3.878 4 C 0.150 3.850 5 N -0.744 5.744 6 C -0.255 4.255 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.499 3.501 15 O -0.578 6.578 16 C -0.092 4.092 17 C -0.127 4.127 18 C -0.112 4.112 19 C -0.145 4.145 20 C -0.181 4.181 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.055 0.945 26 H -0.003 1.003 27 H 0.030 0.970 28 H 0.375 0.625 29 H 0.254 0.746 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.696 -19.744 5.144 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.350 5.350 3 C -0.002 4.002 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.387 4.387 7 H 0.091 0.909 8 C -0.264 4.264 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.289 3.711 15 O -0.457 6.457 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.170 4.170 19 C -0.182 4.182 20 C -0.218 4.218 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.117 0.883 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.015 0.985 27 H 0.047 0.953 28 H 0.207 0.793 29 H 0.063 0.937 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.085 -19.736 4.969 23.669 hybrid contribution 0.907 1.117 -0.467 1.512 sum -11.178 -18.619 4.502 22.178 Atomic orbital electron populations 1.22126 0.76621 1.04802 1.03559 1.47991 1.08721 1.04891 1.73389 1.21273 0.97245 0.85635 0.96005 1.20940 0.94154 0.86684 0.95956 1.42405 1.67653 1.23076 1.05600 1.19570 1.29447 1.02723 0.86927 0.90937 1.25646 1.01457 0.98756 1.00586 1.69817 1.45776 1.19987 1.26242 0.85136 0.78094 0.77313 0.78748 1.19812 1.21635 1.20632 1.21550 0.88002 0.86521 0.75047 1.90708 1.16354 1.87902 1.50711 1.21304 0.97478 0.87886 1.06477 1.21171 1.01231 0.98147 0.92199 1.21280 0.99864 1.00259 0.95557 1.23244 0.99631 0.94812 1.00474 1.22841 0.97120 1.02928 0.98945 0.90393 0.90769 0.88326 0.88988 0.92607 0.98476 0.95256 0.79297 0.93719 0.86137 0.86207 0.94808 0.91878 0.90867 0.86825 0.87550 0.89971 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.14 127.77 1.30 2.45 16 2 N -0.62 -17.04 2.87 -846.77 -2.43 -19.47 16 3 C 0.12 4.41 5.52 86.38 0.48 4.88 16 4 C 0.15 6.67 6.58 86.38 0.57 7.24 16 5 N -0.74 -40.77 5.60 -343.46 -1.92 -42.69 16 6 C -0.26 -15.10 9.99 84.03 0.84 -14.27 16 7 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 8 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 9 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 10 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 14 C 0.50 14.73 7.53 87.66 0.66 15.39 16 15 O -0.58 -23.21 14.54 -3.06 -0.04 -23.25 16 16 C -0.09 -1.70 4.11 29.84 0.12 -1.58 16 17 C -0.13 -2.58 1.59 -52.18 -0.08 -2.66 16 18 C -0.11 -2.44 9.66 71.98 0.70 -1.75 16 19 C -0.14 -2.12 9.87 30.59 0.30 -1.82 16 20 C -0.18 -4.00 9.19 30.59 0.28 -3.72 16 21 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 23 H 0.10 1.04 6.59 -2.39 -0.02 1.03 16 24 H 0.09 2.98 8.07 -2.39 -0.02 2.96 16 25 H 0.06 2.32 7.42 -2.39 -0.02 2.30 16 26 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.38 21.48 7.67 -92.71 -0.71 20.77 16 29 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.12 1.48 7.76 -2.39 -0.02 1.47 16 31 H 0.12 1.69 7.66 -2.39 -0.02 1.67 16 32 H 0.03 0.97 7.60 -2.39 -0.02 0.95 16 33 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.20 8.08 -2.38 -0.02 1.18 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -75.91 316.77 3.85 -72.06 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.31 Total: 24.31 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.63 Total: 0.36 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -4.07 Total: -122.88 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.25 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -75.91 3.85 -72.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266779288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.075 kcal (2) G-P(sol) polarization free energy of solvation -75.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds