Wall clock time and date at job start Sun Mar 29 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.42899 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47163 * 180.02562 * 4 3 2 6 6 N 1.30276 * 126.28251 * 90.02271 * 5 4 3 7 7 N 1.28666 * 109.38196 * 179.97438 * 6 5 4 8 8 C 1.30274 * 109.38017 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.28021 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47474 * 90.02646 * 9 8 7 11 11 C 1.53007 * 109.47263 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46796 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00403 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99559 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99738 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99869 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47086 * 90.00374 * 16 14 12 18 18 H 1.48508 * 109.46998 * 210.00177 * 16 14 12 19 19 H 1.48498 * 109.47266 * 329.99818 * 16 14 12 20 20 O 1.34359 * 107.43498 * 359.76018 * 8 7 6 21 21 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 24 24 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 26 26 H 1.08997 * 109.47442 * 300.00036 * 4 3 2 27 27 H 1.08997 * 109.47171 * 60.00232 * 4 3 2 28 28 H 1.09006 * 109.47132 * 210.02904 * 9 8 7 29 29 H 1.09000 * 109.47329 * 330.01813 * 9 8 7 30 30 H 1.09004 * 109.46884 * 299.99521 * 10 9 8 31 31 H 1.08999 * 109.47123 * 59.99949 * 10 9 8 32 32 H 1.08995 * 109.46779 * 299.99904 * 11 10 9 33 33 H 1.08999 * 109.46940 * 60.00023 * 11 10 9 34 34 H 0.97002 * 120.00259 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 7 4.0192 3.6602 1.0506 7 7 4.3369 4.8498 0.6771 8 6 4.3512 4.9049 -0.6244 9 6 4.6748 6.1151 -1.4621 10 6 6.1777 6.1514 -1.7467 11 6 6.5061 7.3797 -2.5978 12 6 7.9864 7.4157 -2.8776 13 1 8.6289 6.6404 -2.4870 14 6 8.5209 8.4392 -3.6313 15 7 9.8128 8.4710 -3.8750 16 14 7.4098 9.7806 -4.3062 17 1 7.3165 10.8881 -3.3213 18 1 7.9739 10.2966 -5.5794 19 1 6.0558 9.2235 -4.5545 20 8 4.0303 3.6834 -1.0826 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.8341 0.9765 0.8891 27 1 3.8333 0.9768 -0.8908 28 1 4.1279 6.0621 -2.4036 29 1 4.3849 7.0176 -0.9241 30 1 6.7245 6.2045 -0.8053 31 1 6.4675 5.2489 -2.2849 32 1 5.9592 7.3262 -3.5392 33 1 6.2162 8.2824 -2.0601 34 1 10.1888 9.1907 -4.4055 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327861260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:01 Heat of formation + Delta-G solvation = -24.884630 kcal Electronic energy + Delta-G solvation = -16259.642063 eV Core-core repulsion = 13387.508632 eV Total energy + Delta-G solvation = -2872.133431 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.16334 -38.53941 -36.10101 -35.32361 -32.98623 -32.20614 -30.89033 -28.73081 -26.66614 -24.13295 -23.24558 -22.58672 -21.90772 -20.31556 -17.74109 -17.26682 -16.76303 -16.59131 -16.47946 -15.78283 -14.85731 -14.38760 -14.06400 -13.70206 -13.29564 -12.90470 -12.79997 -12.37713 -12.27291 -11.97499 -11.91494 -11.79191 -11.68835 -11.25421 -10.99356 -10.80504 -10.16963 -10.14037 -9.99558 -9.82052 -9.37682 -9.23141 -8.57533 -6.07515 -4.06644 1.08137 2.13479 2.41726 3.29130 3.33028 3.36652 3.38555 3.92278 4.34153 4.41945 4.58087 4.62949 4.77767 4.81955 4.93106 5.25023 5.25820 5.27994 5.39680 5.47469 5.48593 5.50526 5.59654 5.71775 5.94219 6.32744 6.41059 6.58925 6.72185 7.17426 7.30716 7.72948 8.34867 8.48941 8.96747 9.53803 11.05874 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.053033 B = 0.003578 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.850117 B = 7823.859878 C = 7886.395729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.384 6.384 4 C 0.167 3.833 5 C 0.142 3.858 6 N -0.263 5.263 7 N -0.296 5.296 8 C 0.197 3.803 9 C -0.033 4.033 10 C -0.100 4.100 11 C -0.012 4.012 12 C -0.523 4.523 13 H 0.072 0.928 14 C 0.066 3.934 15 N -0.902 5.902 16 Si 0.881 3.119 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.265 1.265 20 O -0.218 6.218 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.939 -15.888 5.524 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.303 6.303 4 C 0.089 3.911 5 C -0.070 4.070 6 N -0.113 5.113 7 N -0.142 5.142 8 C -0.013 4.013 9 C -0.072 4.072 10 C -0.138 4.138 11 C -0.049 4.049 12 C -0.561 4.561 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.541 5.541 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 O -0.097 6.097 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.838 -15.286 6.657 23.696 hybrid contribution -0.324 0.173 -1.590 1.632 sum -17.162 -15.114 5.067 23.423 Atomic orbital electron populations 1.21757 0.93250 1.02498 1.03474 1.22562 0.95989 0.82507 1.00727 1.87965 1.18952 1.27739 1.95631 1.20406 0.83168 0.83662 1.03835 1.27194 1.02532 0.97059 0.80206 1.74327 1.13648 0.97574 1.25714 1.74470 1.18299 1.11979 1.09477 1.28586 0.95117 0.85895 0.91717 1.20672 1.00949 0.87963 0.97595 1.21571 0.89363 1.01403 1.01485 1.19575 0.98026 0.92609 0.94716 1.21085 0.91110 1.10880 1.33053 0.91000 1.25037 0.94917 0.97836 0.95709 1.69911 1.11354 1.33196 1.39636 0.86759 0.81418 0.82345 0.78644 1.20182 1.21383 1.18932 1.84793 1.65742 1.21186 1.37983 0.91690 0.90706 0.91624 0.92710 0.92619 0.88304 0.89724 0.88598 0.87085 0.91569 0.92117 0.96200 0.96461 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.38 -4.10 10.33 -35.23 -0.36 -4.46 16 4 C 0.17 1.63 6.56 36.00 0.24 1.87 16 5 C 0.14 2.07 8.11 -12.94 -0.10 1.96 16 6 N -0.26 -4.51 12.22 32.55 0.40 -4.11 16 7 N -0.30 -5.38 12.22 32.55 0.40 -4.98 16 8 C 0.20 3.27 7.73 -12.94 -0.10 3.17 16 9 C -0.03 -0.51 5.84 -27.89 -0.16 -0.68 16 10 C -0.10 -1.90 5.14 -26.73 -0.14 -2.04 16 11 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 12 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 13 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 14 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 16 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 20 O -0.22 -3.46 10.87 5.40 0.06 -3.40 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 33 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 297.95 15.07 4.49 4.49 Total: -1.00 -33.39 297.95 -4.10 -37.49 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -5.00 Total: -5.49 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.18 Total: -9.23 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 1.57 Total: -36.02 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.31 Total: -7.86 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.39 -4.10 -37.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327861260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.606 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds