Wall clock time and date at job start Sun Mar 29 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.42899 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47163 * 180.02562 * 4 3 2 6 6 N 1.30276 * 126.28251 * 90.02271 * 5 4 3 7 7 N 1.28666 * 109.38196 * 179.97438 * 6 5 4 8 8 C 1.30274 * 109.38017 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.28021 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47474 * 90.02646 * 9 8 7 11 11 C 1.53007 * 109.47263 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46796 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00403 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99559 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99738 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99869 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47086 * 90.00374 * 16 14 12 18 18 H 1.48508 * 109.46998 * 210.00177 * 16 14 12 19 19 H 1.48498 * 109.47266 * 329.99818 * 16 14 12 20 20 O 1.34359 * 107.43498 * 359.76018 * 8 7 6 21 21 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 24 24 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 25 25 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 26 26 H 1.08997 * 109.47442 * 300.00036 * 4 3 2 27 27 H 1.08997 * 109.47171 * 60.00232 * 4 3 2 28 28 H 1.09006 * 109.47132 * 210.02904 * 9 8 7 29 29 H 1.09000 * 109.47329 * 330.01813 * 9 8 7 30 30 H 1.09004 * 109.46884 * 299.99521 * 10 9 8 31 31 H 1.08999 * 109.47123 * 59.99949 * 10 9 8 32 32 H 1.08995 * 109.46779 * 299.99904 * 11 10 9 33 33 H 1.08999 * 109.46940 * 60.00023 * 11 10 9 34 34 H 0.97002 * 120.00259 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 7 4.0192 3.6602 1.0506 7 7 4.3369 4.8498 0.6771 8 6 4.3512 4.9049 -0.6244 9 6 4.6748 6.1151 -1.4621 10 6 6.1777 6.1514 -1.7467 11 6 6.5061 7.3797 -2.5978 12 6 7.9864 7.4157 -2.8776 13 1 8.6289 6.6404 -2.4870 14 6 8.5209 8.4392 -3.6313 15 7 9.8128 8.4710 -3.8750 16 14 7.4098 9.7806 -4.3062 17 1 7.3165 10.8881 -3.3213 18 1 7.9739 10.2966 -5.5794 19 1 6.0558 9.2235 -4.5545 20 8 4.0303 3.6834 -1.0826 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.8341 0.9765 0.8891 27 1 3.8333 0.9768 -0.8908 28 1 4.1279 6.0621 -2.4036 29 1 4.3849 7.0176 -0.9241 30 1 6.7245 6.2045 -0.8053 31 1 6.4675 5.2489 -2.2849 32 1 5.9592 7.3262 -3.5392 33 1 6.2162 8.2824 -2.0601 34 1 10.1888 9.1907 -4.4055 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327861260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:01 Heat of formation + Delta-G solvation = -51.755759 kcal Electronic energy + Delta-G solvation = -16260.807283 eV Core-core repulsion = 13387.508632 eV Total energy + Delta-G solvation = -2873.298651 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.38310 -39.22124 -37.34325 -36.87393 -34.70536 -33.37450 -31.96879 -30.13831 -27.85728 -25.77719 -23.75768 -23.72735 -23.29747 -22.00557 -18.98507 -18.75836 -18.25425 -17.48355 -17.17729 -16.77328 -16.46093 -15.83854 -15.61690 -14.80242 -14.38684 -14.09259 -14.00382 -13.60640 -13.48019 -13.29909 -13.07174 -12.91863 -12.64160 -12.46478 -12.26862 -12.10506 -11.86084 -11.78794 -11.53362 -11.36875 -10.76750 -10.74480 -10.67581 -8.27414 -6.32810 -0.07496 1.01977 1.20613 1.41428 1.43123 1.54884 2.39588 2.45243 3.00783 3.08603 3.31270 3.71686 3.97351 4.08520 4.12697 4.18074 4.24196 4.30789 4.34764 4.46787 4.51345 4.67613 4.82698 4.84412 4.85555 5.01470 5.02824 5.26513 5.43845 5.55014 5.66576 5.99790 6.28402 6.75597 7.11670 7.31785 8.89701 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.053033 B = 0.003578 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.850117 B = 7823.859878 C = 7886.395729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.412 6.412 4 C 0.165 3.835 5 C 0.155 3.845 6 N -0.297 5.297 7 N -0.322 5.322 8 C 0.191 3.809 9 C -0.022 4.022 10 C -0.090 4.090 11 C -0.010 4.010 12 C -0.537 4.537 13 H 0.026 0.974 14 C -0.001 4.001 15 N -0.955 5.955 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.288 1.288 19 H -0.234 1.234 20 O -0.223 6.223 21 H 0.055 0.945 22 H 0.097 0.903 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.036 0.964 33 H 0.031 0.969 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.403 -16.343 4.951 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 O -0.332 6.332 4 C 0.088 3.912 5 C -0.057 4.057 6 N -0.145 5.145 7 N -0.169 5.169 8 C -0.020 4.020 9 C -0.060 4.060 10 C -0.129 4.129 11 C -0.047 4.047 12 C -0.575 4.575 13 H 0.044 0.956 14 C -0.197 4.197 15 N -0.596 5.596 16 Si 0.778 3.222 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.157 1.157 20 O -0.102 6.102 21 H 0.074 0.926 22 H 0.116 0.884 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.324 -15.768 6.114 25.680 hybrid contribution 0.492 0.151 -1.363 1.457 sum -18.833 -15.617 4.751 24.923 Atomic orbital electron populations 1.21805 0.93060 1.03710 1.02486 1.22834 0.96180 0.81012 1.02404 1.87919 1.19102 1.30206 1.95957 1.20790 0.83380 0.80706 1.06325 1.28235 0.99909 0.98300 0.79258 1.74269 1.15562 0.97752 1.26917 1.74396 1.19062 1.12964 1.10434 1.28677 0.95400 0.86473 0.91456 1.20573 0.98094 0.88298 0.99043 1.21325 0.92189 0.99529 0.99846 1.19525 0.94265 0.94725 0.96193 1.21497 0.93821 1.09633 1.32565 0.95588 1.26118 0.96541 1.00905 0.96127 1.70085 1.13878 1.34582 1.41068 0.85577 0.80256 0.78622 0.77705 1.19215 1.21415 1.15727 1.84809 1.65833 1.21103 1.38447 0.92613 0.88399 0.92668 0.90934 0.90976 0.86040 0.86926 0.85923 0.85465 0.93329 0.92900 0.94585 0.95058 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.05 0.56 6.66 71.98 0.48 1.04 16 3 O -0.41 -7.98 10.33 -148.98 -1.54 -9.51 16 4 C 0.17 2.84 6.56 71.24 0.47 3.31 16 5 C 0.16 4.32 8.11 88.34 0.72 5.04 16 6 N -0.30 -10.01 12.22 -165.50 -2.02 -12.03 16 7 N -0.32 -11.58 12.22 -165.51 -2.02 -13.61 16 8 C 0.19 6.11 7.73 88.34 0.68 6.79 16 9 C -0.02 -0.63 5.84 29.85 0.17 -0.45 16 10 C -0.09 -3.37 5.14 30.60 0.16 -3.21 16 11 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 12 C -0.54 -30.70 9.66 25.60 0.25 -30.45 16 13 H 0.03 1.66 7.99 -2.91 -0.02 1.63 16 14 C 0.00 -0.04 5.47 84.66 0.46 0.43 16 15 N -0.96 -60.20 13.96 21.45 0.30 -59.90 16 16 Si 0.96 42.92 27.47 68.60 1.88 44.80 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.23 -9.32 6.54 99.48 0.65 -8.67 16 20 O -0.22 -6.73 10.87 -3.59 -0.04 -6.77 16 21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.05 0.67 8.14 -2.38 -0.02 0.66 16 24 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 26 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 29 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.48 7.20 -2.39 -0.02 1.46 16 33 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 34 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -74.34 297.95 1.83 -72.51 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.02 Total: 3.17 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.25 Total: -18.66 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -3.75 Total: -85.54 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -1.58 Total: -16.28 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -74.34 1.83 -72.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327861260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.751 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds