Wall clock time and date at job start Sun Mar 29 2020 22:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37487 * 120.00367 * 2 1 4 4 N 1.30344 * 120.00336 * 180.02562 * 3 2 1 5 5 N 1.37490 * 119.99687 * 0.02562 * 3 2 1 6 6 C 1.46498 * 119.99750 * 180.27954 * 5 3 2 7 7 C 1.50700 * 109.46769 * 179.72576 * 6 5 3 8 8 O 1.21284 * 120.00579 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99600 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99831 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99608 * 0.02562 * 10 9 7 12 12 C 1.38942 * 119.99955 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00352 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00224 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.46975 * 90.00045 * 14 12 10 16 16 H 1.48487 * 109.47468 * 210.00174 * 14 12 10 17 17 H 1.48503 * 109.47055 * 330.00784 * 14 12 10 18 18 C 1.46499 * 119.99930 * 180.02562 * 2 1 3 19 19 C 1.53000 * 117.50158 * 8.61803 * 18 2 1 20 20 C 1.52992 * 60.00096 * 252.50899 * 19 18 2 21 21 H 1.09001 * 109.47408 * 89.99957 * 1 2 3 22 22 H 1.09001 * 109.46922 * 210.00286 * 1 2 3 23 23 H 1.09010 * 109.46897 * 329.99955 * 1 2 3 24 24 H 0.97000 * 119.99329 * 359.97438 * 4 3 2 25 25 H 0.97001 * 119.99805 * 359.97438 * 5 3 2 26 26 H 1.09004 * 109.46963 * 299.72370 * 6 5 3 27 27 H 1.08994 * 109.47567 * 59.72522 * 6 5 3 28 28 H 0.96995 * 120.00445 * 0.02562 * 9 7 6 29 29 H 0.97000 * 120.00497 * 180.02562 * 13 12 10 30 30 H 1.09004 * 115.55136 * 154.32992 * 18 2 1 31 31 H 1.09008 * 117.49335 * 0.02562 * 19 18 2 32 32 H 1.09004 * 117.50139 * 145.01738 * 19 18 2 33 33 H 1.09003 * 117.50162 * 252.50320 * 20 19 18 34 34 H 1.09006 * 117.51639 * 107.48036 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1525 1.1906 0.0000 4 7 3.4559 1.1906 -0.0005 5 7 1.4650 2.3813 0.0005 6 6 2.1976 3.6500 -0.0057 7 6 1.2183 4.7954 -0.0105 8 8 0.0258 4.5739 -0.0094 9 7 1.6676 6.0661 -0.0160 10 6 0.7767 7.1082 -0.0209 11 1 -0.2851 6.9108 -0.0200 12 6 1.2399 8.4182 -0.0261 13 7 2.5319 8.6583 -0.0268 14 14 0.0260 9.8381 -0.0321 15 1 -0.2959 10.2200 1.3665 16 1 0.6261 10.9993 -0.7366 17 1 -1.2172 9.4236 -0.7306 18 6 2.1974 -1.2687 -0.0006 19 6 1.3887 -2.5514 -0.2045 20 6 1.9631 -2.2203 1.1743 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8901 0.5139 24 1 3.9408 0.3505 -0.0005 25 1 0.4950 2.3813 0.0005 26 1 2.8246 3.7118 0.8838 27 1 2.8238 3.7037 -0.8961 28 1 2.6212 6.2434 -0.0173 29 1 2.8552 9.5728 -0.0301 30 1 3.2001 -1.2325 -0.4266 31 1 0.3115 -2.4511 -0.3387 32 1 1.8591 -3.3593 -0.7650 33 1 2.8114 -2.8105 1.5211 34 1 1.2641 -1.9023 1.9479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330027178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:46 Heat of formation + Delta-G solvation = 14.702262 kcal Electronic energy + Delta-G solvation = -16727.268021 eV Core-core repulsion = 13889.143958 eV Total energy + Delta-G solvation = -2838.124064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65445 -39.93821 -37.55320 -36.04226 -34.17223 -33.31012 -32.90126 -28.94806 -27.23546 -26.34751 -23.32998 -23.05499 -21.34032 -20.46125 -20.04652 -19.13678 -17.71633 -17.00507 -16.66163 -16.44783 -16.18570 -15.76632 -15.63686 -15.26524 -14.86578 -14.08399 -13.97974 -13.53594 -13.40105 -13.14326 -12.95404 -12.66652 -12.43692 -12.32929 -12.11325 -11.70612 -11.54376 -11.43640 -10.52386 -10.30115 -10.07715 -9.43773 -8.80118 -8.48703 -5.98951 1.37962 1.43189 1.54911 1.61676 1.93182 2.04230 2.29626 2.73591 2.93702 3.18614 3.20217 3.76365 3.95185 4.03858 4.14416 4.26823 4.52944 4.56873 4.60899 4.72250 4.74024 4.78267 4.81083 5.04818 5.20705 5.39503 5.56174 5.93516 5.94885 6.38113 6.51396 6.86990 7.06007 7.46895 7.89636 7.98609 8.68358 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.066125 B = 0.004085 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.338493 B = 6853.264611 C = 7184.477776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.631 5.631 3 C 0.638 3.362 4 N -0.853 5.853 5 N -0.713 5.713 6 C 0.160 3.840 7 C 0.431 3.569 8 O -0.628 6.628 9 N -0.560 5.560 10 C -0.338 4.338 11 H 0.085 0.915 12 C -0.011 4.011 13 N -0.917 5.917 14 Si 0.997 3.003 15 H -0.270 1.270 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.064 3.936 19 C -0.164 4.164 20 C -0.191 4.191 21 H 0.057 0.943 22 H 0.091 0.909 23 H 0.058 0.942 24 H 0.341 0.659 25 H 0.410 0.590 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.399 0.601 29 H 0.280 0.720 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 -18.613 0.287 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.356 5.356 3 C 0.273 3.727 4 N -0.505 5.505 5 N -0.360 5.360 6 C 0.031 3.969 7 C 0.218 3.782 8 O -0.516 6.516 9 N -0.195 5.195 10 C -0.467 4.467 11 H 0.103 0.897 12 C -0.211 4.211 13 N -0.557 5.557 14 Si 0.820 3.180 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.195 1.195 18 C -0.041 4.041 19 C -0.202 4.202 20 C -0.230 4.230 21 H 0.076 0.924 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.159 0.841 25 H 0.250 0.750 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.233 0.767 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.782 -17.748 0.275 17.767 hybrid contribution -0.583 0.016 0.038 0.585 sum -1.365 -17.731 0.313 17.787 Atomic orbital electron populations 1.21766 0.79431 1.03323 1.02086 1.46800 1.06098 1.02529 1.80217 1.18717 0.86898 0.79848 0.87261 1.69756 1.02263 1.34985 1.43465 1.43648 1.08928 1.01285 1.82124 1.20408 0.92142 0.80714 1.03611 1.20622 0.89555 0.84765 0.83214 1.90447 1.18282 1.84764 1.58113 1.41835 1.09838 1.04293 1.63554 1.19737 0.91058 0.85514 1.50402 0.89689 1.26126 0.98471 1.00716 0.95825 1.69685 1.13780 1.22814 1.49384 0.84867 0.77649 0.76747 0.78701 1.19552 1.19605 1.19473 1.21544 0.97587 0.80076 1.04895 1.23461 1.00759 0.96666 0.99309 1.23483 1.04399 1.02883 0.92220 0.92413 0.89011 0.92301 0.84148 0.75018 0.89591 0.89570 0.76706 0.91086 0.85843 0.87632 0.86067 0.86777 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 9.50 127.77 1.21 2.80 16 2 N -0.63 -15.42 3.29 -709.71 -2.33 -17.75 16 3 C 0.64 20.34 8.41 260.53 2.19 22.53 16 4 N -0.85 -28.33 13.21 -58.52 -0.77 -29.11 16 5 N -0.71 -25.19 5.50 -353.14 -1.94 -27.14 16 6 C 0.16 6.20 6.15 85.63 0.53 6.72 16 7 C 0.43 20.67 7.85 87.66 0.69 21.35 16 8 O -0.63 -33.49 15.24 -3.04 -0.05 -33.53 16 9 N -0.56 -28.89 5.29 -306.99 -1.62 -30.52 16 10 C -0.34 -18.98 9.68 84.04 0.81 -18.17 16 11 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 12 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 13 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 14 Si 1.00 42.30 29.55 68.60 2.03 44.33 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 18 C 0.06 1.20 6.03 44.99 0.27 1.47 16 19 C -0.16 -2.06 9.72 30.59 0.30 -1.76 16 20 C -0.19 -2.77 10.13 30.59 0.31 -2.46 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.09 1.38 6.33 -2.39 -0.02 1.37 16 23 H 0.06 1.35 6.42 -2.38 -0.02 1.34 16 24 H 0.34 9.85 6.56 -92.71 -0.61 9.24 16 25 H 0.41 14.62 5.31 -92.71 -0.49 14.13 16 26 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 27 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 28 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 29 H 0.28 14.08 8.31 -92.71 -0.77 13.30 16 30 H 0.12 2.29 6.61 -2.38 -0.02 2.28 16 31 H 0.11 1.23 6.46 -2.38 -0.02 1.22 16 32 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.09 1.45 8.12 -2.38 -0.02 1.43 16 Total: -1.00 -65.18 289.29 1.69 -63.49 By element: Atomic # 1 Polarization: 47.67 SS G_CDS: -0.68 Total: 46.99 kcal Atomic # 6 Polarization: 25.60 SS G_CDS: 6.78 Total: 32.38 kcal Atomic # 7 Polarization: -147.27 SS G_CDS: -6.39 Total: -153.66 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.05 Total: -33.53 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -65.18 1.69 -63.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330027178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.194 kcal (2) G-P(sol) polarization free energy of solvation -65.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds