Wall clock time and date at job start Sun Mar 29 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99922 * 2 1 4 4 H 1.48503 * 109.47110 * 270.00129 * 3 2 1 5 5 H 1.48494 * 109.47309 * 30.00576 * 3 2 1 6 6 H 1.48503 * 109.46881 * 150.00711 * 3 2 1 7 7 C 1.37880 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00126 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99988 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.52992 * 109.47482 * 180.02562 * 16 15 14 18 18 C 1.53778 * 113.61727 * 274.13766 * 17 16 15 19 19 C 1.53956 * 87.02468 * 220.04570 * 18 17 16 20 20 C 1.53784 * 113.61658 * 176.52792 * 17 16 15 21 21 H 0.97003 * 119.99832 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47049 * 59.99069 * 9 7 2 23 23 H 1.08998 * 109.47040 * 299.99786 * 9 7 2 24 24 H 1.09005 * 109.46784 * 59.99929 * 10 9 7 25 25 H 1.08998 * 109.46854 * 300.00385 * 10 9 7 26 26 H 1.09001 * 109.46782 * 60.00304 * 14 13 11 27 27 H 1.08992 * 109.47385 * 300.00392 * 14 13 11 28 28 H 1.09002 * 109.47398 * 300.00338 * 15 14 13 29 29 H 1.09001 * 109.47194 * 60.00518 * 15 14 13 30 30 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 31 31 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 32 32 H 1.09000 * 112.84915 * 45.33452 * 17 16 15 33 33 H 1.08996 * 113.61184 * 334.56845 * 18 17 16 34 34 H 1.09000 * 113.61578 * 105.46835 * 18 17 16 35 35 H 1.09002 * 113.53647 * 270.81670 * 19 18 17 36 36 H 1.08996 * 113.66740 * 139.92974 * 19 18 17 37 37 H 1.08998 * 113.61407 * 254.52625 * 20 17 16 38 38 H 1.08996 * 113.61156 * 25.35491 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 8 6.1326 -1.5903 -0.0026 13 8 6.1997 -3.7991 -0.0018 14 6 7.6497 -3.7231 -0.0025 15 6 8.2344 -5.1370 -0.0025 16 6 9.7623 -5.0570 -0.0026 17 6 10.3471 -6.4707 -0.0032 18 6 10.4887 -7.0795 1.4018 19 6 11.8367 -7.6541 0.9295 20 6 11.8822 -6.5024 -0.0887 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8745 -0.6802 -0.8911 24 1 3.6578 -3.1506 -0.8908 25 1 3.6585 -3.1502 0.8892 26 1 7.9859 -3.1905 0.8871 27 1 7.9853 -3.1915 -0.8928 28 1 7.8988 -5.6691 0.8877 29 1 7.8981 -5.6692 -0.8923 30 1 10.0982 -4.5248 -0.8925 31 1 10.0983 -4.5249 0.8874 32 1 9.8563 -7.1314 -0.7179 33 1 10.5842 -6.3354 2.1924 34 1 9.7422 -7.8419 1.6246 35 1 11.7531 -8.6393 0.4707 36 1 12.6225 -7.6021 1.6829 37 1 12.2590 -6.7995 -1.0673 38 1 12.3594 -5.5996 0.2925 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330218106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:17 Heat of formation + Delta-G solvation = -101.639053 kcal Electronic energy + Delta-G solvation = -16391.085106 eV Core-core repulsion = 13619.163697 eV Total energy + Delta-G solvation = -2771.921409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04436 -39.25740 -36.44794 -33.78272 -33.58485 -31.40029 -28.28517 -26.33092 -25.92120 -23.61465 -21.72053 -21.39480 -19.76131 -19.65770 -17.49057 -16.66103 -16.55707 -15.89312 -15.61616 -14.99181 -14.76627 -14.13506 -13.66891 -13.22367 -13.00185 -12.76979 -12.68036 -12.59752 -12.09948 -11.84841 -11.51400 -11.33008 -11.16912 -11.00885 -10.86699 -10.49731 -10.41107 -10.32446 -10.30154 -10.13508 -9.89468 -9.66184 -9.25142 -8.55207 -6.06804 -4.06545 2.72523 3.03692 3.34685 3.41550 3.50969 4.24809 4.31944 4.38045 4.46724 4.52675 4.81500 4.84036 5.03634 5.22990 5.27927 5.30253 5.33077 5.41776 5.43492 5.47184 5.57630 5.59958 5.64295 5.70438 5.88377 5.99524 6.01209 6.03668 6.08406 6.20583 6.51911 6.83871 7.24954 7.32147 7.71580 8.24511 8.47848 8.95688 9.55056 11.05783 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.073565 B = 0.003153 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.525914 B = 8877.686747 C = 9113.469755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.096 4.096 11 C 0.457 3.543 12 O -0.513 6.513 13 O -0.365 6.365 14 C 0.063 3.937 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.139 4.139 21 H 0.264 0.736 22 H 0.025 0.975 23 H 0.021 0.979 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.135 -14.066 0.676 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.133 4.133 11 C 0.301 3.699 12 O -0.401 6.401 13 O -0.283 6.283 14 C -0.011 4.011 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.127 4.127 18 C -0.176 4.176 19 C -0.182 4.182 20 C -0.176 4.176 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 22.193 -13.637 0.680 26.057 hybrid contribution 0.477 1.008 -0.035 1.115 sum 22.669 -12.630 0.644 25.958 Atomic orbital electron populations 1.69909 1.06265 1.27058 1.50681 1.24963 0.94735 0.99213 0.94249 0.86795 0.80574 0.83397 0.78780 1.20170 1.21321 1.18605 1.21037 0.88859 0.94795 1.51752 0.90642 1.19480 0.96893 0.89712 0.97900 1.21534 0.83538 1.03448 1.04820 1.24720 0.92750 0.80995 0.71431 1.90611 1.70769 1.33178 1.45517 1.86545 1.21114 1.36033 1.84574 1.22974 0.77728 0.98168 1.02241 1.21543 0.94823 0.95384 1.03686 1.21491 0.94024 0.96548 1.02470 1.22541 0.95703 0.96572 0.97928 1.23026 0.97420 1.00355 0.96828 1.22844 0.97958 0.98288 0.99094 1.22952 0.96170 0.98974 0.99550 0.92609 0.95629 0.96072 0.88364 0.88327 0.91660 0.91647 0.90790 0.90856 0.91515 0.91539 0.89110 0.90069 0.91481 0.90323 0.91619 0.91621 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.33 27.47 -169.99 -4.67 17.66 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 7 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.00 -0.06 3.33 -27.88 -0.09 -0.15 16 10 C -0.10 -1.91 5.75 -27.88 -0.16 -2.07 16 11 C 0.46 8.77 7.96 36.01 0.29 9.05 16 12 O -0.51 -11.25 15.73 -18.75 -0.29 -11.54 16 13 O -0.36 -5.93 10.22 -39.26 -0.40 -6.33 16 14 C 0.06 0.82 5.47 37.16 0.20 1.03 16 15 C -0.12 -1.14 5.59 -26.73 -0.15 -1.29 16 16 C -0.11 -0.86 5.04 -26.74 -0.13 -1.00 16 17 C -0.11 -0.78 3.64 -89.81 -0.33 -1.11 16 18 C -0.14 -0.96 7.65 -25.83 -0.20 -1.16 16 19 C -0.14 -0.91 8.09 -25.82 -0.21 -1.12 16 20 C -0.14 -0.91 7.65 -25.91 -0.20 -1.11 16 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 22 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 23 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 24 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 25 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 26 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.52 7.88 -51.93 -0.41 0.12 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.57 7.92 -51.93 -0.41 0.15 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -31.85 315.97 -7.90 -39.75 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -6.66 Total: -5.05 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.41 Total: -12.27 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.77 Total: -26.98 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.70 Total: -17.87 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.85 -7.90 -39.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330218106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.890 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds