Wall clock time and date at job start Sun Mar 29 2020 22:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99922 * 2 1 4 4 H 1.48503 * 109.47110 * 270.00129 * 3 2 1 5 5 H 1.48494 * 109.47309 * 30.00576 * 3 2 1 6 6 H 1.48503 * 109.46881 * 150.00711 * 3 2 1 7 7 C 1.37880 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00126 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47065 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99988 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.52992 * 109.47482 * 180.02562 * 16 15 14 18 18 C 1.53778 * 113.61727 * 274.13766 * 17 16 15 19 19 C 1.53956 * 87.02468 * 220.04570 * 18 17 16 20 20 C 1.53784 * 113.61658 * 176.52792 * 17 16 15 21 21 H 0.97003 * 119.99832 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47049 * 59.99069 * 9 7 2 23 23 H 1.08998 * 109.47040 * 299.99786 * 9 7 2 24 24 H 1.09005 * 109.46784 * 59.99929 * 10 9 7 25 25 H 1.08998 * 109.46854 * 300.00385 * 10 9 7 26 26 H 1.09001 * 109.46782 * 60.00304 * 14 13 11 27 27 H 1.08992 * 109.47385 * 300.00392 * 14 13 11 28 28 H 1.09002 * 109.47398 * 300.00338 * 15 14 13 29 29 H 1.09001 * 109.47194 * 60.00518 * 15 14 13 30 30 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 31 31 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 32 32 H 1.09000 * 112.84915 * 45.33452 * 17 16 15 33 33 H 1.08996 * 113.61184 * 334.56845 * 18 17 16 34 34 H 1.09000 * 113.61578 * 105.46835 * 18 17 16 35 35 H 1.09002 * 113.53647 * 270.81670 * 19 18 17 36 36 H 1.08996 * 113.66740 * 139.92974 * 19 18 17 37 37 H 1.08998 * 113.61407 * 254.52625 * 20 17 16 38 38 H 1.08996 * 113.61156 * 25.35491 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 8 6.1326 -1.5903 -0.0026 13 8 6.1997 -3.7991 -0.0018 14 6 7.6497 -3.7231 -0.0025 15 6 8.2344 -5.1370 -0.0025 16 6 9.7623 -5.0570 -0.0026 17 6 10.3471 -6.4707 -0.0032 18 6 10.4887 -7.0795 1.4018 19 6 11.8367 -7.6541 0.9295 20 6 11.8822 -6.5024 -0.0887 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6804 0.8888 23 1 3.8745 -0.6802 -0.8911 24 1 3.6578 -3.1506 -0.8908 25 1 3.6585 -3.1502 0.8892 26 1 7.9859 -3.1905 0.8871 27 1 7.9853 -3.1915 -0.8928 28 1 7.8988 -5.6691 0.8877 29 1 7.8981 -5.6692 -0.8923 30 1 10.0982 -4.5248 -0.8925 31 1 10.0983 -4.5249 0.8874 32 1 9.8563 -7.1314 -0.7179 33 1 10.5842 -6.3354 2.1924 34 1 9.7422 -7.8419 1.6246 35 1 11.7531 -8.6393 0.4707 36 1 12.6225 -7.6021 1.6829 37 1 12.2590 -6.7995 -1.0673 38 1 12.3594 -5.5996 0.2925 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330218106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:17 Heat of formation + Delta-G solvation = -118.343589 kcal Electronic energy + Delta-G solvation = -16391.809469 eV Core-core repulsion = 13619.163697 eV Total energy + Delta-G solvation = -2772.645772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48757 -39.82992 -37.83205 -35.63582 -34.63489 -33.40553 -29.35657 -27.99705 -26.44964 -24.60178 -23.35688 -22.19192 -21.35349 -20.22278 -19.33953 -18.34742 -17.82474 -17.02717 -16.51385 -16.27563 -16.00150 -15.55894 -14.94401 -14.79850 -14.24821 -14.04291 -13.78953 -13.43626 -13.27729 -13.00309 -12.90210 -12.65543 -12.24231 -12.16714 -12.02848 -11.95855 -11.80231 -11.51416 -11.46170 -11.42012 -11.34843 -10.97786 -10.90208 -10.79281 -8.32303 -6.36536 1.20757 1.34158 1.36169 1.50013 1.71548 2.34256 3.02963 3.59707 3.74318 3.79591 3.93127 3.96185 4.04929 4.08474 4.28524 4.31128 4.38757 4.49498 4.63932 4.69869 4.78288 4.85417 4.91277 4.95060 4.98314 5.09874 5.11039 5.22482 5.24913 5.29462 5.35772 5.44106 5.47375 5.59065 5.67696 6.20988 6.68661 6.80555 7.28608 8.83235 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.073565 B = 0.003153 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.525914 B = 8877.686747 C = 9113.469755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.001 3.999 10 C -0.092 4.092 11 C 0.467 3.533 12 O -0.544 6.544 13 O -0.359 6.359 14 C 0.056 3.944 15 C -0.107 4.107 16 C -0.103 4.103 17 C -0.110 4.110 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.139 4.139 21 H 0.268 0.732 22 H 0.017 0.983 23 H 0.016 0.984 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.922 -14.510 0.601 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.570 4.570 8 H 0.070 0.930 9 C -0.036 4.036 10 C -0.130 4.130 11 C 0.313 3.687 12 O -0.434 6.434 13 O -0.276 6.276 14 C -0.017 4.017 15 C -0.145 4.145 16 C -0.141 4.141 17 C -0.128 4.128 18 C -0.180 4.180 19 C -0.180 4.180 20 C -0.176 4.176 21 H 0.077 0.923 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.993 -14.114 0.604 27.843 hybrid contribution -0.067 1.038 -0.009 1.040 sum 23.926 -13.077 0.595 27.273 Atomic orbital electron populations 1.70025 1.07847 1.28219 1.52150 1.25819 0.95532 1.02953 0.94131 0.85804 0.79282 0.79267 0.79229 1.19245 1.20391 1.18271 1.21341 0.90889 0.93924 1.50809 0.93023 1.19325 0.94389 0.92830 0.97070 1.21342 0.84575 1.00612 1.06427 1.24347 0.92410 0.81219 0.70745 1.90603 1.71302 1.34343 1.47159 1.86516 1.23060 1.34237 1.83796 1.23328 0.75643 1.00454 1.02312 1.21531 0.95764 0.93161 1.04038 1.21468 0.92606 0.97299 1.02701 1.22544 0.96149 0.95933 0.98158 1.23054 0.97861 1.00394 0.96666 1.22856 0.97665 0.98437 0.99089 1.22960 0.95595 0.99155 0.99893 0.92276 0.96494 0.96599 0.86798 0.86821 0.91685 0.91595 0.90544 0.90400 0.91256 0.91401 0.88907 0.90208 0.91519 0.89840 0.91254 0.91203 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.94 45.82 27.47 68.60 1.88 47.71 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 7 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 9 C 0.00 0.07 3.33 29.85 0.10 0.17 16 10 C -0.09 -3.55 5.75 29.85 0.17 -3.37 16 11 C 0.47 17.24 7.96 71.24 0.57 17.81 16 12 O -0.54 -23.21 15.73 21.98 0.35 -22.86 16 13 O -0.36 -11.01 10.22 -51.42 -0.53 -11.53 16 14 C 0.06 1.37 5.47 71.98 0.39 1.76 16 15 C -0.11 -1.88 5.59 30.59 0.17 -1.71 16 16 C -0.10 -1.45 5.04 30.59 0.15 -1.30 16 17 C -0.11 -1.36 3.64 -10.27 -0.04 -1.39 16 18 C -0.14 -1.73 7.65 31.18 0.24 -1.49 16 19 C -0.14 -1.54 8.09 31.18 0.25 -1.29 16 20 C -0.14 -1.55 7.65 31.12 0.24 -1.32 16 21 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 22 H 0.02 0.84 7.16 -2.39 -0.02 0.83 16 23 H 0.02 0.78 7.53 -2.39 -0.02 0.76 16 24 H 0.11 4.02 8.14 -2.38 -0.02 4.00 16 25 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 26 H 0.06 1.60 8.13 -2.39 -0.02 1.59 16 27 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.95 7.88 -2.39 -0.02 0.93 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 0.99 7.92 -2.39 -0.02 0.97 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -66.80 315.97 5.91 -60.89 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 0.95 Total: 5.05 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 2.96 Total: -20.97 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.30 Total: -58.28 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.18 Total: -34.39 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.71 kcal Total: -66.80 5.91 -60.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330218106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.454 kcal (2) G-P(sol) polarization free energy of solvation -66.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds