Wall clock time and date at job start Sun Mar 29 2020 22:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00380 * 2 1 4 4 C 1.52998 * 109.47577 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47102 * 64.99757 * 4 3 2 6 6 C 1.46899 * 111.00260 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47182 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47142 * 179.97438 * 7 6 5 9 9 C 1.34950 * 125.48418 * 124.99774 * 8 7 6 10 10 N 1.36671 * 106.72691 * 179.74349 * 9 8 7 11 11 C 1.37568 * 126.88654 * 180.23204 * 10 9 8 12 12 H 1.07998 * 119.99790 * 0.02562 * 11 10 9 13 13 C 1.39007 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31248 * 120.00424 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99919 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46984 * 59.99629 * 15 13 11 17 17 H 1.48496 * 109.47015 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46921 * 300.00043 * 15 13 11 19 19 N 1.40328 * 106.22786 * 0.26242 * 10 9 8 20 20 N 1.28761 * 108.02712 * 0.02562 * 19 10 9 21 21 H 1.08994 * 109.47648 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46982 * 300.00144 * 1 2 3 23 23 H 1.09006 * 109.46841 * 59.99544 * 1 2 3 24 24 H 1.09010 * 109.47040 * 59.99886 * 3 2 1 25 25 H 1.08996 * 109.47217 * 300.00195 * 3 2 1 26 26 H 1.09010 * 109.46901 * 305.00510 * 4 3 2 27 27 H 1.08994 * 109.47427 * 185.00554 * 4 3 2 28 28 H 1.00903 * 110.99839 * 56.04922 * 5 4 3 29 29 H 1.09006 * 109.46819 * 60.00684 * 6 5 4 30 30 H 1.08994 * 109.47057 * 300.00584 * 6 5 4 31 31 H 1.09006 * 109.46734 * 60.00572 * 7 6 5 32 32 H 1.08994 * 109.47552 * 300.00221 * 7 6 5 33 33 H 1.08002 * 126.63939 * 0.02562 * 9 8 7 34 34 H 0.97001 * 120.00330 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9779 0.5622 -1.2542 6 6 5.4404 0.4292 -1.2889 7 6 5.8623 -0.2210 -2.6081 8 6 7.3627 -0.3569 -2.6440 9 6 8.0405 -1.5049 -2.8535 10 7 9.3698 -1.1897 -2.8137 11 6 10.4283 -2.0521 -2.9820 12 1 10.2464 -3.1002 -3.1685 13 6 11.7318 -1.5742 -2.9133 14 7 11.9528 -0.3002 -2.6882 15 14 13.1692 -2.7454 -3.1412 16 1 13.0877 -3.3736 -4.4843 17 1 14.4441 -1.9933 -3.0223 18 1 13.1183 -3.8005 -2.0973 19 7 9.4385 0.1899 -2.5660 20 7 8.2351 0.6378 -2.4693 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8464 0.8901 25 1 1.6887 1.8463 -0.8899 26 1 3.8508 0.5683 0.8427 27 1 3.9785 2.1764 0.0903 28 1 3.6426 1.0802 -2.0526 29 1 5.7686 -0.1926 -0.4558 30 1 5.8970 1.4156 -1.2080 31 1 5.5342 0.4011 -3.4409 32 1 5.4057 -1.2074 -2.6894 33 1 7.6149 -2.4826 -3.0245 34 1 12.8624 0.0333 -2.6406 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330749993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:06 Heat of formation + Delta-G solvation = 38.291868 kcal Electronic energy + Delta-G solvation = -16336.305869 eV Core-core repulsion = 13499.204728 eV Total energy + Delta-G solvation = -2837.101142 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03785 -38.11946 -36.03753 -34.12134 -32.08802 -31.13635 -29.14513 -26.89963 -26.01593 -25.10787 -22.12318 -21.86459 -21.13374 -19.49686 -17.38422 -16.75244 -16.04488 -15.51810 -15.43010 -14.80108 -14.59426 -14.14361 -13.94860 -13.21446 -13.19163 -12.89047 -12.44855 -11.98529 -11.82608 -11.73075 -11.40091 -11.31211 -11.11539 -10.90382 -10.68512 -10.57482 -9.83411 -9.74655 -9.52760 -9.13316 -8.65264 -8.15513 -7.31536 -6.78407 -4.58355 2.86435 2.97267 3.02002 3.37576 3.71827 3.72728 4.09709 4.39963 4.72993 4.84880 4.96109 5.07121 5.22520 5.24227 5.34269 5.49084 5.57597 5.73187 5.78785 5.90545 6.04916 6.32211 6.33634 6.50373 6.65325 6.81437 7.02081 7.07576 7.18487 7.29167 7.61292 7.86828 7.95509 8.55401 9.17136 10.18663 10.26417 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.068652 B = 0.003571 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.753797 B = 7838.677814 C = 8020.656569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.065 3.935 4 C 0.059 3.941 5 N -0.684 5.684 6 C 0.068 3.932 7 C -0.010 4.010 8 C -0.074 4.074 9 C -0.114 4.114 10 N -0.150 5.150 11 C -0.316 4.316 12 H 0.120 0.880 13 C 0.047 3.953 14 N -0.762 5.762 15 Si 0.942 3.058 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.264 1.264 19 N -0.094 5.094 20 N -0.330 5.330 21 H 0.084 0.916 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.335 0.665 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.155 0.845 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 -0.137 3.154 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.012 4.012 4 C -0.071 4.071 5 N -0.315 5.315 6 C -0.061 4.061 7 C -0.050 4.050 8 C -0.221 4.221 9 C -0.268 4.268 10 N 0.079 4.921 11 C -0.452 4.452 12 H 0.137 0.863 13 C -0.173 4.173 14 N -0.389 5.389 15 Si 0.765 3.235 16 H -0.188 1.188 17 H -0.199 1.199 18 H -0.188 1.188 19 N -0.071 5.071 20 N -0.190 5.190 21 H 0.102 0.898 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.153 0.847 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.172 0.828 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.067 0.555 3.651 13.579 hybrid contribution 0.168 -0.374 -0.416 0.584 sum -12.900 0.182 3.235 13.300 Atomic orbital electron populations 1.22718 0.81938 1.02566 0.99445 1.88040 1.18672 1.27282 1.95196 1.22572 0.93925 0.85052 0.99647 1.21955 0.92598 0.97921 0.94608 1.60461 1.12229 1.55478 1.03376 1.21925 0.85300 0.99817 0.99054 1.19472 0.89170 1.00615 0.95785 1.20673 0.95355 0.90354 1.15755 1.22362 0.84712 1.00066 1.19665 1.46690 1.03990 1.08256 1.33204 1.20088 0.83447 0.91388 1.50291 0.86267 1.25774 0.99656 0.96845 0.94987 1.70136 1.23091 1.12972 1.32684 0.85769 0.78591 0.79388 0.79767 1.18844 1.19878 1.18841 1.82522 1.10795 0.86379 1.27437 1.73974 0.98060 1.27923 1.19037 0.89794 0.94607 0.94362 0.93257 0.93524 0.90202 0.93831 0.84746 0.91310 0.94567 0.92525 0.91059 0.82770 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.65 10.65 -35.23 -0.38 -5.02 16 3 C 0.07 0.68 6.22 37.16 0.23 0.91 16 4 C 0.06 0.72 6.07 -3.83 -0.02 0.70 16 5 N -0.68 -9.75 6.45 -113.78 -0.73 -10.48 16 6 C 0.07 1.16 5.64 -3.82 -0.02 1.14 16 7 C -0.01 -0.19 6.03 -27.88 -0.17 -0.36 16 8 C -0.07 -1.76 6.38 -83.06 -0.53 -2.29 16 9 C -0.11 -2.80 11.45 -16.56 -0.19 -2.99 16 10 N -0.15 -4.20 3.78 -11.47 -0.04 -4.24 16 11 C -0.32 -8.31 10.31 -14.69 -0.15 -8.46 16 12 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 13 C 0.05 1.19 5.50 -17.52 -0.10 1.09 16 14 N -0.76 -20.97 11.89 55.49 0.66 -20.31 16 15 Si 0.94 18.40 29.55 -169.99 -5.02 13.37 16 16 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 N -0.09 -2.84 11.73 60.35 0.71 -2.13 16 20 N -0.33 -9.10 12.29 33.16 0.41 -8.69 16 21 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.34 4.30 8.73 -39.29 -0.34 3.96 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.15 3.18 8.06 -52.49 -0.42 2.76 16 34 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -32.40 298.70 -4.70 -37.10 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.96 Total: 4.79 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.16 Total: -8.88 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 1.00 Total: -45.86 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.38 Total: -5.02 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.37 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.40 -4.70 -37.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330749993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.391 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds